Wall clock time and date at job start Sun Mar 7 2021 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36764 * 125.80408 * 2 1 4 4 C 1.47267 * 126.94108 * 359.94009 * 3 2 1 5 5 O 1.21619 * 119.99910 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99852 * 180.02562 * 4 3 2 7 7 C 1.46495 * 119.99770 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47465 * 324.99641 * 7 6 4 9 9 C 1.52998 * 109.47289 * 85.00118 * 7 6 4 10 10 C 1.53000 * 109.47222 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46802 * 299.99784 * 10 9 7 12 12 H 1.09004 * 109.47021 * 299.99373 * 11 10 9 13 13 C 1.50704 * 109.47034 * 180.02562 * 11 10 9 14 14 N 1.30523 * 126.34835 * 145.02297 * 13 11 10 15 15 N 1.28592 * 109.67062 * 179.97438 * 14 13 11 16 16 C 1.30524 * 109.67571 * 359.97438 * 15 14 13 17 17 N 1.35485 * 107.30675 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47362 * 59.99886 * 11 10 9 19 19 C 1.52998 * 109.46799 * 204.99941 * 7 6 4 20 20 C 1.46688 * 106.11629 * 180.20992 * 3 2 1 21 21 C 1.34487 * 106.33031 * 359.61952 * 20 3 2 22 22 C 1.50700 * 125.57058 * 180.16187 * 21 20 3 23 23 O 1.42903 * 109.47094 * 65.28139 * 22 21 20 24 24 Si 1.86298 * 109.47224 * 185.27847 * 22 21 20 25 25 N 1.34667 * 125.79827 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47175 * 90.00205 * 1 2 3 27 27 H 1.09000 * 109.46896 * 210.00167 * 1 2 3 28 28 H 1.09006 * 109.46534 * 329.99990 * 1 2 3 29 29 H 0.97004 * 120.00193 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.47043 * 299.99888 * 9 7 6 31 31 H 1.08998 * 109.47707 * 59.99217 * 9 7 6 32 32 H 1.09000 * 109.46963 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47404 * 59.99763 * 10 9 7 34 34 H 1.07998 * 126.34341 * 179.97438 * 16 15 14 35 35 H 0.96997 * 126.98100 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.46785 * 60.00057 * 18 11 10 37 37 H 1.08999 * 109.46922 * 179.97438 * 18 11 10 38 38 H 1.08991 * 109.47416 * 59.99921 * 19 7 6 39 39 H 1.09004 * 109.47021 * 299.99292 * 19 7 6 40 40 H 1.08003 * 126.83508 * 179.75065 * 20 3 2 41 41 H 1.09004 * 109.47548 * 305.27863 * 22 21 20 42 42 H 0.96698 * 114.00358 * 59.99341 * 23 22 21 43 43 H 1.48505 * 110.00050 * 180.02562 * 24 22 21 44 44 H 1.48497 * 109.99951 * 301.32182 * 24 22 21 45 45 H 0.96996 * 124.84842 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0012 5 8 0.6841 2.7839 -0.0019 6 7 2.7851 3.5054 -0.0016 7 6 2.3506 4.9044 -0.0022 8 1 1.4390 5.0015 -0.5918 9 6 2.0791 5.3548 1.4345 10 6 1.6247 6.8158 1.4338 11 6 2.7215 7.6907 0.8236 12 1 3.6333 7.5941 1.4132 13 6 2.2742 9.1298 0.8234 14 7 3.0333 10.1759 1.0051 15 7 2.3207 11.2443 0.9406 16 6 1.0746 10.9285 0.7143 17 7 1.0097 9.5776 0.6326 18 6 2.9931 7.2403 -0.6131 19 6 3.4479 5.7789 -0.6121 20 6 3.6882 0.6150 -0.0052 21 6 3.6095 -0.7275 0.0008 22 6 4.7819 -1.6744 0.0020 23 8 5.5094 -1.5302 1.2235 24 14 4.1657 -3.4259 -0.1506 25 7 2.2947 -1.0923 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8901 0.5139 29 1 3.7313 3.2914 -0.0006 30 1 1.2974 4.7317 1.8691 31 1 2.9907 5.2577 2.0242 32 1 1.4308 7.1365 2.4573 33 1 0.7129 6.9124 0.8443 34 1 0.2485 11.6164 0.6113 35 1 0.2186 9.0402 0.4709 36 1 2.0813 7.3369 -1.2026 37 1 3.7742 7.8639 -1.0478 38 1 3.6413 5.4580 -1.6356 39 1 4.3595 5.6819 -0.0224 40 1 4.5891 1.2108 -0.0103 41 1 5.4355 -1.4446 -0.8395 42 1 4.9888 -1.7195 2.0161 43 1 5.3123 -4.3696 -0.1500 44 1 3.2483 -3.7413 0.9736 45 1 1.9733 -2.0074 0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:52 Heat of formation + Delta-G solvation = 39.460885 kcal Electronic energy + Delta-G solvation = -28092.140217 eV Core-core repulsion = 24112.427776 eV Total energy + Delta-G solvation = -3979.712441 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.14043 -42.47014 -40.71467 -39.06288 -37.88084 -35.64196 -34.56036 -32.81511 -32.77564 -31.85496 -31.74892 -29.57320 -28.83996 -25.79086 -24.68564 -24.07311 -23.46416 -22.88110 -22.00429 -21.46978 -21.16290 -20.28881 -19.28918 -18.73743 -17.76223 -17.41732 -16.86109 -16.74630 -16.59341 -16.36397 -16.05362 -15.81381 -15.39838 -15.24609 -14.97179 -14.81055 -14.56227 -14.47895 -14.05783 -13.93955 -13.79374 -13.63080 -13.35425 -13.25836 -12.81191 -12.75397 -12.60888 -12.37751 -12.24201 -12.17874 -12.14133 -11.82881 -11.63546 -11.49059 -11.27584 -10.94329 -10.58972 -10.24405 -10.08621 -9.78234 -9.14761 -5.05179 0.72778 0.86594 1.13602 1.28714 1.44671 1.82211 1.85484 1.90294 2.05970 2.43131 2.56592 3.18720 3.34572 3.55930 3.67887 3.69206 3.88596 3.89340 3.98629 4.10822 4.17962 4.23125 4.25103 4.36037 4.36335 4.42003 4.45099 4.51888 4.53479 4.55662 4.69471 4.74055 4.78991 4.81758 5.01663 5.02500 5.05461 5.06752 5.10369 5.17841 5.24773 5.29669 5.36799 5.62688 5.71597 5.87780 6.24578 6.40433 6.45573 6.70002 7.39334 7.71275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.117 3.883 3 C -0.265 4.265 4 C 0.589 3.411 5 O -0.584 6.584 6 N -0.715 5.715 7 C 0.149 3.851 8 H 0.074 0.926 9 C -0.121 4.121 10 C -0.106 4.106 11 C 0.003 3.997 12 H 0.106 0.894 13 C 0.192 3.808 14 N -0.343 5.343 15 N -0.355 5.355 16 C 0.169 3.831 17 N -0.569 5.569 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.022 4.022 22 C -0.047 4.047 23 O -0.541 6.541 24 Si 0.754 3.246 25 N -0.536 5.536 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.410 0.590 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.262 0.738 35 H 0.445 0.555 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.386 0.614 43 H -0.295 1.295 44 H -0.275 1.275 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -6.541 -2.943 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.003 4.003 3 C -0.274 4.274 4 C 0.379 3.621 5 O -0.466 6.466 6 N -0.365 5.365 7 C 0.044 3.956 8 H 0.092 0.908 9 C -0.160 4.160 10 C -0.145 4.145 11 C -0.018 4.018 12 H 0.124 0.876 13 C -0.079 4.079 14 N -0.183 5.183 15 N -0.193 5.193 16 C -0.121 4.121 17 N -0.183 5.183 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.131 4.131 22 C -0.157 4.157 23 O -0.348 6.348 24 Si 0.658 3.342 25 N -0.136 5.136 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.277 0.723 35 H 0.289 0.711 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.236 0.764 43 H -0.222 1.222 44 H -0.201 1.201 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.669 -6.153 -2.705 7.231 hybrid contribution -0.987 -0.842 0.992 1.633 sum -3.656 -6.995 -1.713 8.076 Atomic orbital electron populations 1.20609 0.86105 1.04431 1.04182 1.20575 0.94284 0.85621 0.99784 1.20228 0.94055 0.91907 1.21253 1.17558 0.85060 0.84854 0.74621 1.90717 1.17952 1.84929 1.52962 1.45761 1.10113 1.05415 1.75186 1.20957 0.98459 0.79775 0.96367 0.90766 1.21813 1.02064 0.95204 0.96872 1.21525 0.97473 0.93883 1.01578 1.19814 1.00413 0.82371 0.99209 0.87571 1.25184 0.82050 0.98860 1.01767 1.74187 1.27962 0.95219 1.20917 1.74188 1.02822 1.22075 1.20235 1.27297 0.99291 0.84067 1.01484 1.44089 1.11261 1.08543 1.54416 1.21475 1.02523 0.95893 0.94063 1.21739 0.98111 0.93138 1.02437 1.21985 0.95491 0.93146 1.05401 1.20597 0.84623 0.95590 1.12276 1.24618 0.93235 1.07509 0.90317 1.86634 1.41055 1.91038 1.16095 0.94569 0.80348 0.72033 0.87296 1.41716 1.05288 1.08792 1.57847 0.89491 0.89496 0.89963 0.75355 0.92561 0.90653 0.90961 0.90624 0.72251 0.71127 0.91042 0.90990 0.89996 0.89628 0.82474 0.84246 0.76411 1.22169 1.20102 0.73392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 9.88 71.24 0.70 0.85 16 2 C 0.12 0.04 7.17 41.78 0.30 0.34 16 3 C -0.26 -0.72 6.29 -19.04 -0.12 -0.84 16 4 C 0.59 2.99 7.77 86.62 0.67 3.66 16 5 O -0.58 -6.44 14.48 -4.09 -0.06 -6.50 16 6 N -0.71 0.67 5.07 -445.97 -2.26 -1.59 16 7 C 0.15 -0.36 2.45 44.99 0.11 -0.25 16 8 H 0.07 0.09 7.58 -2.39 -0.02 0.07 16 9 C -0.12 0.31 5.49 30.59 0.17 0.47 16 10 C -0.11 0.50 4.97 30.59 0.15 0.65 16 11 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 12 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 13 C 0.19 0.49 6.99 137.98 0.96 1.46 16 14 N -0.34 -3.98 12.21 -50.15 -0.61 -4.59 16 15 N -0.35 -3.89 12.21 -59.99 -0.73 -4.62 16 16 C 0.17 0.00 13.19 180.11 2.37 2.37 16 17 N -0.57 1.80 5.96 -189.86 -1.13 0.67 16 18 C -0.10 0.44 5.19 30.61 0.16 0.60 16 19 C -0.12 0.69 5.39 30.61 0.17 0.85 16 20 C -0.14 0.11 10.45 23.62 0.25 0.36 16 21 C -0.02 0.07 6.09 40.98 0.25 0.32 16 22 C -0.05 0.23 2.98 71.24 0.21 0.44 16 23 O -0.54 0.77 12.88 -148.98 -1.92 -1.15 16 24 Si 0.75 -4.95 30.96 68.60 2.12 -2.83 16 25 N -0.54 2.22 5.41 -171.07 -0.93 1.30 16 26 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.08 0.29 6.47 -2.38 -0.02 0.27 16 29 H 0.41 -2.09 7.73 -92.71 -0.72 -2.80 16 30 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.08 -0.51 7.52 -2.39 -0.02 -0.53 16 34 H 0.26 -2.62 8.06 -2.91 -0.02 -2.64 16 35 H 0.45 -4.66 8.29 -92.71 -0.77 -5.43 16 36 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 40 H 0.16 -0.62 7.70 -2.91 -0.02 -0.64 16 41 H 0.14 -0.97 7.96 -2.38 -0.02 -0.99 16 42 H 0.39 -2.49 8.70 -74.06 -0.64 -3.14 16 43 H -0.29 -0.55 7.11 99.48 0.71 0.16 16 44 H -0.27 0.97 7.11 99.48 0.71 1.67 16 45 H 0.42 -3.90 6.72 -92.71 -0.62 -4.53 16 Total: 0.00 -28.97 368.50 -0.84 -29.81 By element: Atomic # 1 Polarization: -20.10 SS G_CDS: -1.65 Total: -21.75 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.33 Total: 11.26 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -5.66 Total: -8.84 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -1.98 Total: -7.65 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: 2.12 Total: -2.83 kcal Total: -28.97 -0.84 -29.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.272 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds