Wall clock time and date at job start Sun Mar 7 2021 08:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84811 * 43.79680 * 6 5 3 8 8 C 1.53776 * 113.62044 * 174.99953 * 6 5 3 9 9 C 1.53781 * 87.08638 * 139.97658 * 8 6 5 10 10 H 1.08996 * 113.61335 * 219.94146 * 9 8 6 11 11 N 1.46497 * 113.61421 * 89.11580 * 9 8 6 12 12 C 1.34769 * 119.99984 * 155.00247 * 11 9 8 13 13 O 1.21720 * 120.00173 * 0.02562 * 12 11 9 14 14 C 1.46574 * 120.00120 * 180.02562 * 12 11 9 15 15 C 1.40854 * 126.58058 * 179.97438 * 14 12 11 16 16 C 1.40089 * 132.86761 * 359.97438 * 15 14 12 17 17 C 1.36449 * 119.25314 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.29069 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47218 * 240.00380 * 18 17 16 20 20 Si 1.86299 * 109.46494 * 120.00527 * 18 17 16 21 21 C 1.40157 * 119.41067 * 0.04693 * 17 16 15 22 22 C 1.35184 * 120.32034 * 359.95635 * 21 17 16 23 23 N 1.36243 * 120.70437 * 0.02562 * 22 21 17 24 24 N 1.40017 * 132.01289 * 180.02562 * 23 22 21 25 25 C 1.30744 * 109.60769 * 179.71349 * 24 23 22 26 26 C 1.53778 * 87.07826 * 334.56876 * 9 8 6 27 27 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 28 28 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 30 30 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 31 31 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 32 32 H 1.08999 * 113.61219 * 254.53069 * 8 6 5 33 33 H 1.09007 * 113.61095 * 25.42330 * 8 6 5 34 34 H 0.97003 * 120.00036 * 335.00076 * 11 9 8 35 35 H 1.07996 * 120.36995 * 359.97438 * 16 15 14 36 36 H 1.09000 * 109.47261 * 0.02562 * 18 17 16 37 37 H 0.96709 * 113.99563 * 300.00482 * 19 18 17 38 38 H 1.48505 * 110.00360 * 58.68100 * 20 18 17 39 39 H 1.48505 * 109.99985 * 179.97438 * 20 18 17 40 40 H 1.07997 * 119.83717 * 179.97438 * 21 17 16 41 41 H 1.08001 * 119.64852 * 180.02562 * 22 21 17 42 42 H 1.08001 * 125.62934 * 180.26550 * 25 24 23 43 43 H 1.09007 * 113.61587 * 270.88136 * 26 9 8 44 44 H 1.09000 * 113.61680 * 139.97923 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4252 3.3531 0.6960 8 6 5.5209 2.9348 0.1225 9 6 5.3811 4.0677 -0.9080 10 1 6.1876 4.0934 -1.6407 11 7 5.1158 5.3775 -0.3078 12 6 5.4575 6.5024 -0.9667 13 8 5.9862 6.4301 -2.0607 14 6 5.1925 7.8128 -0.3659 15 6 5.4904 9.0695 -0.9278 16 6 6.0848 9.4566 -2.1359 17 6 6.2419 10.7848 -2.4063 18 6 6.8778 11.2273 -3.6990 19 8 8.0522 11.9904 -3.4154 20 14 5.6721 12.2760 -4.6568 21 6 5.8072 11.7337 -1.4709 22 6 5.2363 11.3372 -0.3114 23 7 5.0747 10.0135 -0.0325 24 7 4.5255 9.3483 1.0704 25 6 4.5864 8.0565 0.8786 26 6 4.1155 3.3511 -1.4072 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9564 0.7806 0.8893 31 1 3.9558 0.7809 -0.8907 32 1 5.8399 3.2769 1.1070 33 1 6.0993 2.0845 -0.2391 34 1 4.6941 5.4351 0.5639 35 1 6.4148 8.7121 -2.8452 36 1 7.1469 10.3519 -4.2899 37 1 7.8871 12.7863 -2.8913 38 1 5.2724 13.4565 -3.8493 39 1 6.2873 12.7194 -5.9336 40 1 5.9286 12.7867 -1.6776 41 1 4.9049 12.0777 0.4015 42 1 4.2319 7.3012 1.5645 43 1 4.3095 2.6146 -2.1871 44 1 3.2997 4.0292 -1.6576 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:06:26 Heat of formation + Delta-G solvation = -19.535805 kcal Electronic energy + Delta-G solvation = -29345.485674 eV Core-core repulsion = 25039.551480 eV Total energy + Delta-G solvation = -4305.934194 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.33768 -41.68135 -40.87169 -39.52178 -39.06343 -37.45905 -37.32607 -34.62966 -34.18408 -32.13889 -31.64557 -30.18421 -28.39822 -27.31254 -26.62155 -25.33429 -24.55822 -23.65191 -23.04643 -21.82175 -21.41424 -20.13751 -19.18771 -18.63653 -18.53099 -17.93334 -17.72629 -17.52540 -17.40803 -17.01394 -16.88468 -16.45094 -15.94029 -15.78742 -15.67461 -15.47740 -15.06477 -14.90660 -14.68944 -14.63239 -14.23859 -14.07083 -13.83020 -13.54210 -13.49608 -13.29099 -13.25677 -12.94788 -12.63952 -12.47731 -12.15848 -11.99530 -11.90863 -11.80820 -11.67847 -11.60814 -11.33150 -11.15181 -10.98007 -10.89957 -10.33968 -10.03587 -8.81759 -4.89365 -0.58067 -0.15846 0.99655 1.00930 1.20588 1.21371 1.59213 1.81915 1.87956 2.06615 2.21832 2.47244 3.06562 3.21734 3.35651 3.50698 3.52878 3.56353 3.69090 3.83029 3.85254 3.91402 3.96700 3.97801 4.17130 4.27809 4.29614 4.33502 4.38064 4.46558 4.56282 4.56422 4.65743 4.70697 4.73329 4.83328 4.87715 4.96276 5.08533 5.11102 5.13255 5.17569 5.26080 5.29420 5.45672 5.63106 5.69714 6.26042 6.45733 6.60087 6.74790 7.29712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.101 4.101 6 C -0.096 4.096 7 H 0.092 0.908 8 C -0.120 4.120 9 C 0.114 3.886 10 H 0.089 0.911 11 N -0.699 5.699 12 C 0.600 3.400 13 O -0.588 6.588 14 C -0.341 4.341 15 C 0.153 3.847 16 C -0.115 4.115 17 C -0.050 4.050 18 C -0.084 4.084 19 O -0.541 6.541 20 Si 0.767 3.233 21 C -0.156 4.156 22 C 0.117 3.883 23 N -0.274 5.274 24 N -0.340 5.340 25 C 0.130 3.870 26 C -0.149 4.149 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.411 0.589 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.390 0.610 38 H -0.253 1.253 39 H -0.293 1.293 40 H 0.191 0.809 41 H 0.205 0.795 42 H 0.231 0.769 43 H 0.101 0.899 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -1.282 2.412 3.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.138 4.138 6 C -0.115 4.115 7 H 0.110 0.890 8 C -0.158 4.158 9 C 0.009 3.991 10 H 0.107 0.893 11 N -0.350 5.350 12 C 0.391 3.609 13 O -0.470 6.470 14 C -0.356 4.356 15 C 0.031 3.969 16 C -0.135 4.135 17 C -0.056 4.056 18 C -0.191 4.191 19 O -0.350 6.350 20 Si 0.667 3.333 21 C -0.177 4.177 22 C -0.009 4.009 23 N -0.037 5.037 24 N -0.160 5.160 25 C -0.051 4.051 26 C -0.188 4.188 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.248 0.752 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.241 0.759 38 H -0.178 1.178 39 H -0.220 1.220 40 H 0.208 0.792 41 H 0.222 0.778 42 H 0.247 0.753 43 H 0.119 0.881 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.531 0.105 1.919 2.457 hybrid contribution 0.308 -0.021 0.467 0.560 sum -1.223 0.084 2.387 2.683 Atomic orbital electron populations 1.23463 0.75410 1.05389 1.02216 1.86515 1.24531 1.33651 1.83839 1.24592 0.93632 0.80787 0.71019 1.90675 1.68320 1.37403 1.46798 1.21591 0.84952 0.99074 1.08146 1.22435 0.97073 0.94119 0.97848 0.88981 1.23354 0.94730 0.97818 0.99850 1.21848 0.98047 0.81886 0.97333 0.89311 1.45267 1.62712 1.04383 1.22625 1.16999 0.76775 0.83354 0.83815 1.90746 1.46205 1.87890 1.22201 1.19708 1.23218 0.92016 1.00640 1.19546 0.96109 0.89513 0.91687 1.20661 1.00853 0.96988 0.95003 1.20577 0.95180 0.92868 0.97005 1.25291 0.94448 1.02691 0.96712 1.86682 1.30780 1.41404 1.76116 0.93421 0.83156 0.79920 0.76806 1.21102 1.01562 1.02505 0.92529 1.22198 0.97862 0.81660 0.99159 1.46307 1.37779 1.06375 1.13287 1.77567 1.25450 1.07447 1.05539 1.24568 0.92095 0.93717 0.94693 1.23552 0.97648 0.99995 0.97614 0.92405 0.85534 0.92158 0.84814 0.85395 0.89196 0.86249 0.75248 0.83043 0.85880 0.75936 1.17762 1.21961 0.79178 0.77774 0.75284 0.88098 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.79 10.57 -51.35 -0.54 -1.33 16 3 C 0.45 1.16 7.96 71.23 0.57 1.73 16 4 O -0.54 -5.12 15.51 21.94 0.34 -4.78 16 5 C -0.10 0.57 5.65 29.85 0.17 0.74 16 6 C -0.10 0.38 3.03 -10.27 -0.03 0.35 16 7 H 0.09 -0.15 7.68 -2.39 -0.02 -0.17 16 8 C -0.12 0.82 7.39 31.12 0.23 1.05 16 9 C 0.11 0.02 4.32 45.52 0.20 0.21 16 10 H 0.09 0.36 7.46 -2.39 -0.02 0.34 16 11 N -0.70 -1.08 5.25 -444.11 -2.33 -3.41 16 12 C 0.60 5.22 7.78 86.42 0.67 5.89 16 13 O -0.59 -9.21 15.30 -4.41 -0.07 -9.28 16 14 C -0.34 -2.46 6.17 -19.90 -0.12 -2.58 16 15 C 0.15 1.15 6.76 39.49 0.27 1.42 16 16 C -0.12 -0.59 9.35 22.30 0.21 -0.38 16 17 C -0.05 0.03 4.53 -19.81 -0.09 -0.05 16 18 C -0.08 0.17 2.84 71.24 0.20 0.38 16 19 O -0.54 0.00 12.88 -148.98 -1.92 -1.92 16 20 Si 0.77 -3.44 31.97 68.60 2.19 -1.24 16 21 C -0.16 0.78 8.38 22.03 0.18 0.96 16 22 C 0.12 -0.27 11.17 83.30 0.93 0.66 16 23 N -0.27 -1.35 3.86 -187.28 -0.72 -2.07 16 24 N -0.34 -2.10 12.57 -56.61 -0.71 -2.81 16 25 C 0.13 0.36 11.44 85.42 0.98 1.34 16 26 C -0.15 -0.01 7.43 31.12 0.23 0.22 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 30 H 0.13 -1.37 8.14 -2.38 -0.02 -1.38 16 31 H 0.13 -1.16 7.84 -2.39 -0.02 -1.18 16 32 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.12 -1.21 8.10 -2.38 -0.02 -1.23 16 34 H 0.41 -1.66 7.62 -92.71 -0.71 -2.36 16 35 H 0.15 1.08 7.01 -2.91 -0.02 1.06 16 36 H 0.12 -0.20 7.71 -2.39 -0.02 -0.22 16 37 H 0.39 -3.18 8.08 -74.05 -0.60 -3.78 16 38 H -0.25 1.05 7.05 99.48 0.70 1.75 16 39 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 40 H 0.19 -2.33 7.26 -2.91 -0.02 -2.35 16 41 H 0.21 -1.80 8.06 -2.91 -0.02 -1.83 16 42 H 0.23 -1.45 7.46 -2.91 -0.02 -1.47 16 43 H 0.10 -0.22 7.90 -2.38 -0.02 -0.23 16 44 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 Total: 0.00 -30.27 377.83 1.82 -28.45 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.21 Total: -14.70 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.79 Total: 13.10 kcal Atomic # 7 Polarization: -4.53 SS G_CDS: -3.77 Total: -8.30 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -2.19 Total: -17.31 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.19 Total: -1.24 kcal Total: -30.27 1.82 -28.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.916 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds