Wall clock time and date at job start Sun Mar 7 2021 08:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20826 * 119.99712 * 359.72483 * 3 2 1 5 5 C 1.50700 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46890 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.85383 * 43.80985 * 6 5 3 8 8 C 1.53786 * 113.61308 * 175.00225 * 6 5 3 9 9 C 1.53776 * 87.08151 * 139.98165 * 8 6 5 10 10 H 1.09002 * 113.61121 * 220.01570 * 9 8 6 11 11 N 1.46498 * 113.61389 * 89.20160 * 9 8 6 12 12 C 1.34777 * 119.99888 * 154.99663 * 11 9 8 13 13 O 1.21569 * 120.00174 * 0.02562 * 12 11 9 14 14 C 1.47715 * 120.00195 * 179.97438 * 12 11 9 15 15 C 1.39711 * 120.02357 * 359.72806 * 14 12 11 16 16 C 1.37666 * 119.97803 * 179.76534 * 15 14 12 17 17 C 1.39503 * 120.02323 * 0.50946 * 16 15 14 18 18 C 1.48281 * 119.97761 * 179.72343 * 17 16 15 19 19 C 1.39403 * 120.12306 * 179.74564 * 18 17 16 20 20 C 1.38003 * 119.86539 * 179.76236 * 19 18 17 21 21 C 1.38332 * 120.12733 * 0.49010 * 20 19 18 22 22 C 1.50702 * 119.87460 * 179.74000 * 21 20 19 23 23 O 1.42899 * 109.47498 * 245.02396 * 22 21 20 24 24 Si 1.86300 * 109.46859 * 5.02519 * 22 21 20 25 25 C 1.38339 * 120.25656 * 359.76281 * 21 20 19 26 26 C 1.37991 * 120.12801 * 0.02562 * 25 21 20 27 27 C 1.39509 * 120.04794 * 359.73974 * 17 16 15 28 28 C 1.37665 * 120.02644 * 0.02562 * 27 17 16 29 29 C 1.53779 * 87.08283 * 334.56755 * 9 8 6 30 30 H 1.09012 * 109.47257 * 300.00032 * 1 2 3 31 31 H 1.08996 * 109.47465 * 60.00089 * 1 2 3 32 32 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47012 * 300.00044 * 5 3 2 34 34 H 1.08999 * 109.46550 * 59.99877 * 5 3 2 35 35 H 1.09004 * 113.61409 * 254.53394 * 8 6 5 36 36 H 1.08999 * 113.61341 * 25.34675 * 8 6 5 37 37 H 0.96997 * 120.00066 * 335.00137 * 11 9 8 38 38 H 1.08000 * 120.01009 * 0.02562 * 15 14 12 39 39 H 1.08001 * 119.98849 * 180.23302 * 16 15 14 40 40 H 1.07994 * 120.06854 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.93969 * 180.23197 * 20 19 18 42 42 H 1.09007 * 109.46903 * 125.01995 * 22 21 20 43 43 H 0.96692 * 113.99847 * 59.99622 * 23 22 21 44 44 H 1.48498 * 110.00189 * 58.67923 * 24 22 21 45 45 H 1.48501 * 110.00284 * 179.97438 * 24 22 21 46 46 H 1.07999 * 119.93603 * 179.97438 * 25 21 20 47 47 H 1.07997 * 120.06652 * 179.97438 * 26 25 21 48 48 H 1.07996 * 119.98899 * 179.97438 * 27 17 16 49 49 H 1.07997 * 120.01799 * 179.97438 * 28 27 17 50 50 H 1.08996 * 113.61322 * 270.88433 * 29 9 8 51 51 H 1.08999 * 113.61565 * 139.97987 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 1 3.4252 3.3537 0.6943 8 6 5.5208 2.9350 0.1210 9 6 5.3809 4.0670 -0.9103 10 1 6.1868 4.0913 -1.6439 11 7 5.1175 5.3776 -0.3110 12 6 5.4597 6.5016 -0.9713 13 8 5.9865 6.4279 -2.0644 14 6 5.1936 7.8231 -0.3673 15 6 4.5821 7.9086 0.8860 16 6 4.3389 9.1405 1.4501 17 6 4.6932 10.3036 0.7662 18 6 4.4253 11.6302 1.3721 19 6 4.7829 12.7943 0.6937 20 6 4.5265 14.0263 1.2604 21 6 3.9252 14.1071 2.5035 22 6 3.6533 15.4553 3.1196 23 8 4.4398 15.6056 4.3032 24 14 4.0986 16.7948 1.9038 25 6 3.5730 12.9551 3.1837 26 6 3.8204 11.7178 2.6250 27 6 5.2992 10.2196 -0.4876 28 6 5.5477 8.9886 -1.0515 29 6 4.1152 3.3500 -1.4090 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.9563 0.7807 0.8891 34 1 3.9556 0.7810 -0.8908 35 1 5.8398 3.2779 1.1053 36 1 6.0991 2.0839 -0.2386 37 1 4.6969 5.4364 0.5611 38 1 4.3040 7.0083 1.4138 39 1 3.8696 9.2067 2.4206 40 1 5.2557 12.7323 -0.2753 41 1 4.7997 14.9290 0.7342 42 1 2.5960 15.5320 3.3737 43 1 5.3930 15.5481 4.1519 44 1 3.3103 16.6307 0.6561 45 1 3.8344 18.1294 2.4991 46 1 3.1041 13.0242 4.1542 47 1 3.5454 10.8191 3.1570 48 1 5.5727 11.1207 -1.0164 49 1 6.0164 8.9237 -2.0223 50 1 4.3093 2.6130 -2.1882 51 1 3.2995 4.0280 -1.6599 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:08:01 Heat of formation + Delta-G solvation = -69.486305 kcal Electronic energy + Delta-G solvation = -32830.456779 eV Core-core repulsion = 28241.218491 eV Total energy + Delta-G solvation = -4589.238288 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.166 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.84791 -41.40640 -40.84036 -39.86120 -38.94572 -37.52924 -37.47847 -34.94391 -33.91937 -32.60855 -31.75497 -31.51649 -30.61567 -28.43696 -27.06129 -26.69186 -25.10603 -24.67159 -24.07948 -22.61368 -22.46136 -21.87023 -21.39059 -20.22899 -19.30147 -18.59670 -18.43286 -17.84196 -17.64620 -17.51619 -17.22343 -16.82117 -16.36495 -16.19023 -16.16160 -15.94303 -15.51919 -15.38351 -15.24759 -14.99865 -14.94886 -14.85810 -14.70950 -14.34496 -14.25479 -14.12650 -14.03008 -13.62812 -13.59122 -13.34938 -13.19334 -12.97694 -12.77155 -12.67968 -12.54887 -12.11985 -12.06660 -11.96056 -11.83598 -11.73101 -11.61498 -11.38971 -11.21862 -11.14254 -10.78395 -10.42221 -10.14547 -10.08486 -9.96681 -9.09027 -5.01730 -0.71072 0.32838 0.39515 0.48440 1.18108 1.29943 1.61994 1.74987 1.79214 1.95326 2.01618 2.58820 2.99396 3.38255 3.44175 3.49278 3.53162 3.61954 3.65234 3.75958 3.78646 3.85644 3.86524 3.92128 4.00237 4.04141 4.24879 4.25379 4.26867 4.27184 4.35985 4.41015 4.46808 4.50036 4.60775 4.63238 4.66423 4.68276 4.75595 4.80759 4.85819 4.88922 4.90372 5.03619 5.07249 5.10139 5.11754 5.18851 5.19946 5.25495 5.40038 5.41906 5.48966 5.58342 5.63933 5.77857 5.92152 6.41133 6.71521 6.75342 7.08834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.543 6.543 5 C -0.101 4.101 6 C -0.097 4.097 7 H 0.092 0.908 8 C -0.118 4.118 9 C 0.108 3.892 10 H 0.090 0.910 11 N -0.696 5.696 12 C 0.558 3.442 13 O -0.579 6.579 14 C -0.153 4.153 15 C -0.076 4.076 16 C -0.121 4.121 17 C -0.022 4.022 18 C -0.060 4.060 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.074 4.074 23 O -0.555 6.555 24 Si 0.773 3.227 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.121 4.121 28 C -0.069 4.069 29 C -0.150 4.150 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.413 0.587 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.106 0.894 43 H 0.395 0.605 44 H -0.287 1.287 45 H -0.301 1.301 46 H 0.131 0.869 47 H 0.144 0.856 48 H 0.151 0.849 49 H 0.130 0.870 50 H 0.102 0.898 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -3.832 3.670 5.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.433 6.433 5 C -0.138 4.138 6 C -0.115 4.115 7 H 0.110 0.890 8 C -0.156 4.156 9 C 0.003 3.997 10 H 0.108 0.892 11 N -0.348 5.348 12 C 0.347 3.653 13 O -0.460 6.460 14 C -0.156 4.156 15 C -0.094 4.094 16 C -0.139 4.139 17 C -0.022 4.022 18 C -0.060 4.060 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.184 4.184 23 O -0.363 6.363 24 Si 0.679 3.321 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.139 4.139 28 C -0.088 4.088 29 C -0.189 4.189 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.251 0.749 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.124 0.876 43 H 0.245 0.755 44 H -0.214 1.214 45 H -0.229 1.229 46 H 0.149 0.851 47 H 0.162 0.838 48 H 0.169 0.831 49 H 0.148 0.852 50 H 0.120 0.880 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.780 -2.907 2.710 4.355 hybrid contribution -1.323 -0.115 0.337 1.370 sum 0.456 -3.022 3.047 4.316 Atomic orbital electron populations 1.23464 0.75389 1.05417 1.02211 1.86516 1.24543 1.33618 1.83817 1.24598 0.93644 0.80793 0.71007 1.90672 1.68333 1.37432 1.46834 1.21588 0.84952 0.98953 1.08258 1.22440 0.97135 0.94258 0.97680 0.88995 1.23351 0.94719 0.97718 0.99788 1.21933 0.98237 0.81950 0.97592 0.89192 1.45512 1.61927 1.04716 1.22620 1.18562 0.77265 0.85110 0.84374 1.90763 1.45086 1.87984 1.22180 1.19996 1.05610 0.92677 0.97327 1.21443 0.95594 0.99225 0.93166 1.21456 1.00312 0.90954 1.01157 1.19155 0.96445 0.92616 0.94005 1.18934 1.00019 0.92019 0.95073 1.21496 0.99004 0.91209 1.00652 1.21141 0.99126 0.98321 0.94927 1.20539 0.99863 0.96119 0.95446 1.25165 0.98428 0.99937 0.94865 1.86472 1.23257 1.95265 1.31312 0.93771 0.89942 0.73855 0.74490 1.21099 0.99216 0.91634 1.00130 1.21508 0.97922 0.98590 0.94597 1.21405 0.99255 0.98088 0.95116 1.21277 0.96474 0.91446 0.99645 1.23560 0.97496 1.00045 0.97809 0.92129 0.92441 0.85505 0.84661 0.85343 0.89021 0.86043 0.74914 0.82908 0.82807 0.83429 0.83557 0.87638 0.75464 1.21427 1.22906 0.85133 0.83796 0.83129 0.85240 0.87951 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.64 10.57 -51.46 -0.54 -1.19 16 3 C 0.45 0.95 7.96 71.24 0.57 1.52 16 4 O -0.54 -4.91 15.51 21.96 0.34 -4.57 16 5 C -0.10 0.63 5.65 29.85 0.17 0.80 16 6 C -0.10 0.45 3.03 -10.27 -0.03 0.41 16 7 H 0.09 -0.21 7.68 -2.39 -0.02 -0.23 16 8 C -0.12 0.91 7.39 31.12 0.23 1.14 16 9 C 0.11 -0.06 4.32 45.52 0.20 0.14 16 10 H 0.09 0.30 7.46 -2.39 -0.02 0.29 16 11 N -0.70 -0.35 5.22 -443.04 -2.31 -2.66 16 12 C 0.56 4.01 7.77 86.75 0.67 4.68 16 13 O -0.58 -8.94 15.93 -3.93 -0.06 -9.01 16 14 C -0.15 -0.60 5.88 -20.06 -0.12 -0.72 16 15 C -0.08 0.12 9.52 22.49 0.21 0.33 16 16 C -0.12 0.23 9.41 22.44 0.21 0.44 16 17 C -0.02 -0.01 5.88 -19.99 -0.12 -0.12 16 18 C -0.06 0.01 5.88 -20.04 -0.12 -0.11 16 19 C -0.11 0.19 9.43 22.49 0.21 0.40 16 20 C -0.12 0.28 8.65 22.24 0.19 0.47 16 21 C -0.12 0.08 5.36 -19.82 -0.11 -0.02 16 22 C -0.07 0.07 2.80 71.24 0.20 0.27 16 23 O -0.55 0.11 12.83 -148.98 -1.91 -1.80 16 24 Si 0.77 -1.80 29.79 68.60 2.04 0.25 16 25 C -0.10 0.01 9.67 22.24 0.21 0.23 16 26 C -0.11 0.11 9.43 22.49 0.21 0.33 16 27 C -0.12 -0.10 9.41 22.44 0.21 0.11 16 28 C -0.07 -0.30 9.58 22.49 0.22 -0.09 16 29 C -0.15 0.05 7.43 31.12 0.23 0.28 16 30 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 32 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.14 -1.49 8.14 -2.39 -0.02 -1.51 16 34 H 0.13 -1.24 7.84 -2.39 -0.02 -1.26 16 35 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 36 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 37 H 0.41 -2.07 6.72 -92.71 -0.62 -2.69 16 38 H 0.15 -1.18 6.39 -2.91 -0.02 -1.19 16 39 H 0.15 -1.02 6.19 -2.91 -0.02 -1.04 16 40 H 0.15 -0.85 6.19 -2.91 -0.02 -0.86 16 41 H 0.15 -0.97 4.89 -2.91 -0.01 -0.98 16 42 H 0.11 0.04 7.96 -2.38 -0.02 0.02 16 43 H 0.40 -3.24 8.70 -74.06 -0.64 -3.89 16 44 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 45 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16 46 H 0.13 -0.14 8.06 -2.91 -0.02 -0.16 16 47 H 0.14 -0.73 6.19 -2.91 -0.02 -0.75 16 48 H 0.15 -0.54 6.19 -2.91 -0.02 -0.56 16 49 H 0.13 0.73 7.64 -2.91 -0.02 0.71 16 50 H 0.10 -0.26 7.89 -2.39 -0.02 -0.28 16 51 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -27.64 421.96 1.98 -25.66 By element: Atomic # 1 Polarization: -18.11 SS G_CDS: -0.23 Total: -18.34 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 4.66 Total: 11.66 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -2.31 Total: -2.66 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -2.18 Total: -16.57 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.04 Total: 0.25 kcal Total: -27.64 1.98 -25.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.825 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds