Wall clock time and date at job start Sun Mar 7 2021 08:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00213 * 2 1 4 4 O 1.20832 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00350 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47369 * 179.97438 * 5 3 2 7 7 H 1.09004 * 112.90667 * 43.74595 * 6 5 3 8 8 C 1.53778 * 113.61971 * 175.00201 * 6 5 3 9 9 C 1.53776 * 87.08555 * 139.98102 * 8 6 5 10 10 H 1.08995 * 113.61909 * 219.93725 * 9 8 6 11 11 N 1.46497 * 113.61484 * 89.11750 * 9 8 6 12 12 C 1.34779 * 120.00106 * 155.00284 * 11 9 8 13 13 O 1.21582 * 120.00026 * 359.97438 * 12 11 9 14 14 C 1.47602 * 119.99778 * 179.97438 * 12 11 9 15 15 C 1.39717 * 120.09105 * 0.02562 * 14 12 11 16 16 C 1.37724 * 119.90985 * 180.25670 * 15 14 12 17 17 C 1.50698 * 119.95169 * 179.71871 * 16 15 14 18 18 C 1.38981 * 120.08591 * 359.43921 * 16 15 14 19 19 O 1.35712 * 119.90643 * 180.28089 * 18 16 15 20 20 C 1.39014 * 120.17511 * 0.55651 * 18 16 15 21 21 C 1.50707 * 119.95241 * 179.70122 * 20 18 16 22 22 O 1.42908 * 109.47081 * 285.02358 * 21 20 18 23 23 Si 1.86291 * 109.47173 * 165.02426 * 21 20 18 24 24 C 1.37678 * 120.09174 * 359.72842 * 20 18 16 25 25 C 1.53784 * 113.61399 * 272.50186 * 6 5 3 26 26 H 1.09003 * 109.47215 * 60.00168 * 1 2 3 27 27 H 1.08995 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47430 * 300.00440 * 1 2 3 29 29 H 1.09005 * 109.46984 * 59.99675 * 5 3 2 30 30 H 1.09001 * 109.47269 * 300.00193 * 5 3 2 31 31 H 1.09000 * 113.61131 * 25.43176 * 8 6 5 32 32 H 1.09004 * 113.61593 * 254.53329 * 8 6 5 33 33 H 0.96999 * 119.99940 * 334.99660 * 11 9 8 34 34 H 1.08002 * 120.04088 * 359.97108 * 15 14 12 35 35 H 1.09000 * 109.46985 * 89.99997 * 17 16 15 36 36 H 1.09000 * 109.47001 * 209.99538 * 17 16 15 37 37 H 1.08998 * 109.47342 * 329.99551 * 17 16 15 38 38 H 0.96697 * 113.99999 * 270.27278 * 19 18 16 39 39 H 1.09000 * 109.46902 * 45.01900 * 21 20 18 40 40 H 0.96698 * 113.99942 * 180.02562 * 22 21 20 41 41 H 1.48500 * 110.00035 * 298.68378 * 23 21 20 42 42 H 1.48500 * 110.00298 * 59.99888 * 23 21 20 43 43 H 1.08003 * 120.04236 * 179.97438 * 24 20 18 44 44 H 1.08997 * 113.61462 * 105.47001 * 25 6 5 45 45 H 1.08996 * 113.61737 * 334.56435 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 1 3.4246 3.3550 0.6935 8 6 5.5208 2.9350 0.1231 9 6 5.3818 4.0666 -0.9088 10 1 6.1889 4.0915 -1.6410 11 7 5.1160 5.3771 -0.3104 12 6 5.4582 6.5012 -0.9705 13 8 5.9880 6.4277 -2.0623 14 6 5.1898 7.8216 -0.3677 15 6 4.5816 7.9082 0.8871 16 6 4.3281 9.1422 1.4437 17 6 3.6664 9.2368 2.7943 18 6 4.6870 10.3001 0.7640 19 8 4.4407 11.5141 1.3184 20 6 5.2925 10.2181 -0.4847 21 6 5.6735 11.4771 -1.2203 22 8 4.4990 12.0887 -1.7578 23 14 6.8443 11.0560 -2.6068 24 6 5.5440 8.9884 -1.0505 25 6 4.1164 3.3493 -1.4083 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9564 0.7805 -0.8892 30 1 3.9558 0.7810 0.8908 31 1 6.0994 2.0843 -0.2371 32 1 5.8390 3.2783 1.1075 33 1 4.6936 5.4357 0.5608 34 1 4.3064 7.0087 1.4179 35 1 4.4292 9.2448 3.5729 36 1 3.0818 10.1552 2.8490 37 1 3.0095 8.3790 2.9380 38 1 3.5749 11.8811 1.0929 39 1 6.1597 12.1675 -0.5311 40 1 4.6694 12.9058 -2.2459 41 1 8.0833 10.4482 -2.0584 42 1 6.1932 10.1151 -3.5534 43 1 6.0140 8.9257 -2.0208 44 1 3.3009 4.0272 -1.6601 45 1 4.3111 2.6120 -2.1871 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16627170_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:08:35 Heat of formation + Delta-G solvation = -141.624838 kcal Electronic energy + Delta-G solvation = -28850.346470 eV Core-core repulsion = 24607.740009 eV Total energy + Delta-G solvation = -4242.606461 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91859 -41.51001 -40.76696 -39.39295 -37.76005 -37.52413 -37.38731 -34.85423 -34.09126 -32.24877 -31.17342 -28.49943 -28.11867 -26.86033 -26.83163 -25.47276 -24.09352 -22.06941 -21.83947 -21.60356 -20.32958 -19.52762 -18.71097 -18.52492 -18.41030 -17.74374 -17.68042 -17.50288 -16.76241 -16.64833 -16.13153 -15.98193 -15.63329 -15.33054 -15.26710 -15.05770 -14.90292 -14.71846 -14.38383 -14.12759 -13.91189 -13.75098 -13.65933 -13.52583 -13.45993 -13.03135 -13.00714 -12.93841 -12.80890 -12.60817 -12.22530 -11.90787 -11.80067 -11.72943 -11.51187 -11.38938 -11.34704 -11.00724 -10.33346 -10.16315 -10.00483 -9.67685 -4.96848 -0.39750 0.04205 1.21118 1.28497 1.61038 1.70773 1.72172 1.97159 2.03855 2.54585 3.07083 3.23780 3.30772 3.34768 3.50200 3.59486 3.62771 3.72545 3.77412 3.83397 3.92238 4.13813 4.14560 4.20759 4.24694 4.26748 4.30710 4.37930 4.39945 4.51923 4.56305 4.59862 4.60792 4.62338 4.63029 4.74312 4.94207 4.97417 5.00158 5.04758 5.06473 5.09767 5.24565 5.40535 5.46840 5.53895 6.38858 6.54904 6.56720 6.74232 7.13569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.505 6.505 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.102 0.898 8 C -0.139 4.139 9 C 0.119 3.881 10 H 0.108 0.892 11 N -0.708 5.708 12 C 0.565 3.435 13 O -0.532 6.532 14 C -0.138 4.138 15 C -0.065 4.065 16 C -0.116 4.116 17 C -0.109 4.109 18 C 0.162 3.838 19 O -0.487 6.487 20 C -0.105 4.105 21 C -0.065 4.065 22 O -0.547 6.547 23 Si 0.679 3.321 24 C -0.053 4.053 25 C -0.147 4.147 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.384 0.616 41 H -0.252 1.252 42 H -0.245 1.245 43 H 0.139 0.861 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 -0.340 2.836 2.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.392 6.392 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.120 0.880 8 C -0.177 4.177 9 C 0.014 3.986 10 H 0.126 0.874 11 N -0.359 5.359 12 C 0.353 3.647 13 O -0.409 6.409 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.117 4.117 17 C -0.166 4.166 18 C 0.116 3.884 19 O -0.299 6.299 20 C -0.106 4.106 21 C -0.175 4.175 22 O -0.354 6.354 23 Si 0.580 3.420 24 C -0.071 4.071 25 C -0.185 4.185 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.257 0.743 39 H 0.099 0.901 40 H 0.232 0.768 41 H -0.177 1.177 42 H -0.170 1.170 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.305 -1.326 2.158 2.551 hybrid contribution -1.241 -0.058 0.796 1.475 sum -0.936 -1.384 2.954 3.394 Atomic orbital electron populations 1.23297 0.75964 1.03941 1.02668 1.86510 1.23771 1.33539 1.84048 1.23847 0.92326 0.81375 0.72301 1.90688 1.67265 1.36342 1.44946 1.21448 0.87537 0.99062 1.06205 1.22534 0.96305 0.94054 0.99246 0.88023 1.23408 0.95630 0.98587 1.00060 1.21829 0.98806 0.81350 0.96603 0.87389 1.45541 1.62830 1.05007 1.22548 1.18109 0.77930 0.83897 0.84789 1.90807 1.42575 1.87288 1.20212 1.19759 1.04980 0.93164 0.96255 1.21094 0.96220 0.97438 0.93621 1.20208 1.00921 0.92077 0.98490 1.20697 1.00311 1.03279 0.92303 1.18262 0.95217 0.85067 0.89816 1.84674 1.41205 1.31155 1.72870 1.19609 1.02671 0.93803 0.94491 1.24538 0.94641 0.94525 1.03824 1.86431 1.30926 1.43648 1.74378 0.95450 0.78168 0.87278 0.81134 1.20979 0.96399 0.90544 0.99221 1.23529 0.98505 1.00104 0.96389 0.91785 0.87904 0.91809 0.87224 0.87211 0.87959 0.90271 0.76298 0.84869 0.90479 0.90891 0.91110 0.74256 0.90128 0.76754 1.17681 1.16990 0.84345 0.90524 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.42 10.57 -39.27 -0.41 -0.84 16 3 C 0.46 0.59 7.96 36.00 0.29 0.88 16 4 O -0.51 -2.14 15.51 -18.75 -0.29 -2.44 16 5 C -0.11 0.23 5.65 -27.89 -0.16 0.07 16 6 C -0.10 0.17 3.03 -89.81 -0.27 -0.10 16 7 H 0.10 -0.08 7.68 -51.93 -0.40 -0.48 16 8 C -0.14 0.38 7.39 -25.92 -0.19 0.18 16 9 C 0.12 0.01 4.32 -67.12 -0.29 -0.28 16 10 H 0.11 0.17 7.46 -51.93 -0.39 -0.22 16 11 N -0.71 -0.50 5.21 -54.04 -0.28 -0.78 16 12 C 0.56 2.33 7.76 -12.44 -0.10 2.23 16 13 O -0.53 -4.18 15.94 5.29 0.08 -4.09 16 14 C -0.14 -0.46 5.88 -104.96 -0.62 -1.07 16 15 C -0.06 -0.05 9.18 -39.22 -0.36 -0.41 16 16 C -0.12 -0.12 5.89 -104.54 -0.62 -0.73 16 17 C -0.11 0.13 9.78 36.00 0.35 0.48 16 18 C 0.16 0.35 6.66 -39.02 -0.26 0.09 16 19 O -0.49 -0.38 11.85 -18.84 -0.22 -0.61 16 20 C -0.11 -0.33 5.30 -104.54 -0.55 -0.89 16 21 C -0.06 -0.06 2.36 36.01 0.09 0.03 16 22 O -0.55 -0.10 12.86 -35.23 -0.45 -0.56 16 23 Si 0.68 0.40 30.19 -169.99 -5.13 -4.74 16 24 C -0.05 -0.23 8.20 -39.22 -0.32 -0.56 16 25 C -0.15 0.02 7.43 -25.91 -0.19 -0.17 16 26 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 27 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 28 H 0.06 -0.03 8.13 -51.93 -0.42 -0.46 16 29 H 0.11 -0.39 7.84 -51.93 -0.41 -0.80 16 30 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 31 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 32 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 33 H 0.40 -0.72 6.72 -40.82 -0.27 -0.99 16 34 H 0.13 -0.30 6.39 -52.49 -0.34 -0.64 16 35 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 36 H 0.07 -0.11 7.53 -51.93 -0.39 -0.51 16 37 H 0.07 -0.17 8.08 -51.93 -0.42 -0.59 16 38 H 0.40 -1.05 9.06 45.56 0.41 -0.64 16 39 H 0.08 -0.01 7.82 -51.93 -0.41 -0.41 16 40 H 0.38 -1.79 8.74 45.56 0.40 -1.39 16 41 H -0.25 -0.89 7.11 56.52 0.40 -0.49 16 42 H -0.25 -1.00 6.75 56.52 0.38 -0.62 16 43 H 0.14 0.77 4.47 -52.48 -0.23 0.54 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 -0.10 7.89 -51.93 -0.41 -0.51 16 LS Contribution 378.09 15.07 5.70 5.70 Total: 0.00 -11.45 378.09 -8.60 -20.05 By element: Atomic # 1 Polarization: -7.04 SS G_CDS: -5.45 Total: -12.49 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.14 Total: 0.79 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -0.28 Total: -0.78 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -1.30 Total: -8.53 kcal Atomic # 14 Polarization: 0.40 SS G_CDS: -5.13 Total: -4.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -11.45 -8.60 -20.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.573 kcal (2) G-P(sol) polarization free energy of solvation -11.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds