Wall clock time and date at job start Sun Mar 7 2021 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00213 * 2 1 4 4 O 1.20832 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00350 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47369 * 179.97438 * 5 3 2 7 7 H 1.09004 * 112.90667 * 43.74595 * 6 5 3 8 8 C 1.53778 * 113.61971 * 175.00201 * 6 5 3 9 9 C 1.53776 * 87.08555 * 139.98102 * 8 6 5 10 10 H 1.08995 * 113.61909 * 219.93725 * 9 8 6 11 11 N 1.46497 * 113.61484 * 89.11750 * 9 8 6 12 12 C 1.34779 * 120.00106 * 155.00284 * 11 9 8 13 13 O 1.21582 * 120.00026 * 359.97438 * 12 11 9 14 14 C 1.47602 * 119.99778 * 179.97438 * 12 11 9 15 15 C 1.39717 * 120.09105 * 0.02562 * 14 12 11 16 16 C 1.37724 * 119.90985 * 180.25670 * 15 14 12 17 17 C 1.50698 * 119.95169 * 179.71871 * 16 15 14 18 18 C 1.38981 * 120.08591 * 359.43921 * 16 15 14 19 19 O 1.35712 * 119.90643 * 180.28089 * 18 16 15 20 20 C 1.39014 * 120.17511 * 0.55651 * 18 16 15 21 21 C 1.50707 * 119.95241 * 179.70122 * 20 18 16 22 22 O 1.42908 * 109.47081 * 285.02358 * 21 20 18 23 23 Si 1.86291 * 109.47173 * 165.02426 * 21 20 18 24 24 C 1.37678 * 120.09174 * 359.72842 * 20 18 16 25 25 C 1.53784 * 113.61399 * 272.50186 * 6 5 3 26 26 H 1.09003 * 109.47215 * 60.00168 * 1 2 3 27 27 H 1.08995 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47430 * 300.00440 * 1 2 3 29 29 H 1.09005 * 109.46984 * 59.99675 * 5 3 2 30 30 H 1.09001 * 109.47269 * 300.00193 * 5 3 2 31 31 H 1.09000 * 113.61131 * 25.43176 * 8 6 5 32 32 H 1.09004 * 113.61593 * 254.53329 * 8 6 5 33 33 H 0.96999 * 119.99940 * 334.99660 * 11 9 8 34 34 H 1.08002 * 120.04088 * 359.97108 * 15 14 12 35 35 H 1.09000 * 109.46985 * 89.99997 * 17 16 15 36 36 H 1.09000 * 109.47001 * 209.99538 * 17 16 15 37 37 H 1.08998 * 109.47342 * 329.99551 * 17 16 15 38 38 H 0.96697 * 113.99999 * 270.27278 * 19 18 16 39 39 H 1.09000 * 109.46902 * 45.01900 * 21 20 18 40 40 H 0.96698 * 113.99942 * 180.02562 * 22 21 20 41 41 H 1.48500 * 110.00035 * 298.68378 * 23 21 20 42 42 H 1.48500 * 110.00298 * 59.99888 * 23 21 20 43 43 H 1.08003 * 120.04236 * 179.97438 * 24 20 18 44 44 H 1.08997 * 113.61462 * 105.47001 * 25 6 5 45 45 H 1.08996 * 113.61737 * 334.56435 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 1 3.4246 3.3550 0.6935 8 6 5.5208 2.9350 0.1231 9 6 5.3818 4.0666 -0.9088 10 1 6.1889 4.0915 -1.6410 11 7 5.1160 5.3771 -0.3104 12 6 5.4582 6.5012 -0.9705 13 8 5.9880 6.4277 -2.0623 14 6 5.1898 7.8216 -0.3677 15 6 4.5816 7.9082 0.8871 16 6 4.3281 9.1422 1.4437 17 6 3.6664 9.2368 2.7943 18 6 4.6870 10.3001 0.7640 19 8 4.4407 11.5141 1.3184 20 6 5.2925 10.2181 -0.4847 21 6 5.6735 11.4771 -1.2203 22 8 4.4990 12.0887 -1.7578 23 14 6.8443 11.0560 -2.6068 24 6 5.5440 8.9884 -1.0505 25 6 4.1164 3.3493 -1.4083 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9564 0.7805 -0.8892 30 1 3.9558 0.7810 0.8908 31 1 6.0994 2.0843 -0.2371 32 1 5.8390 3.2783 1.1075 33 1 4.6936 5.4357 0.5608 34 1 4.3064 7.0087 1.4179 35 1 4.4292 9.2448 3.5729 36 1 3.0818 10.1552 2.8490 37 1 3.0095 8.3790 2.9380 38 1 3.5749 11.8811 1.0929 39 1 6.1597 12.1675 -0.5311 40 1 4.6694 12.9058 -2.2459 41 1 8.0833 10.4482 -2.0584 42 1 6.1932 10.1151 -3.5534 43 1 6.0140 8.9257 -2.0208 44 1 3.3009 4.0272 -1.6601 45 1 4.3111 2.6120 -2.1871 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:08:34 Heat of formation + Delta-G solvation = -145.814038 kcal Electronic energy + Delta-G solvation = -28850.528127 eV Core-core repulsion = 24607.740009 eV Total energy + Delta-G solvation = -4242.788118 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04018 -41.59519 -40.86669 -39.51970 -37.79219 -37.62309 -37.50679 -35.02218 -34.16971 -32.30060 -31.19187 -28.46027 -28.12481 -26.94789 -26.75051 -25.58105 -24.15672 -22.14987 -21.88694 -21.75835 -20.33162 -19.60777 -18.85299 -18.59522 -18.43648 -17.85849 -17.70886 -17.54132 -16.85272 -16.74306 -16.30986 -16.15339 -15.64066 -15.48566 -15.28807 -15.13570 -14.95345 -14.73749 -14.34025 -14.17260 -14.02062 -13.80174 -13.69977 -13.57047 -13.40096 -13.02609 -12.99720 -12.95357 -12.77578 -12.70159 -12.21111 -12.12065 -11.85439 -11.78227 -11.57672 -11.43954 -11.32164 -11.27374 -10.39568 -10.33552 -10.12328 -9.80176 -5.10759 -0.57154 -0.10943 1.15976 1.18587 1.40720 1.53148 1.76701 1.83690 1.90113 2.36575 3.00274 3.19626 3.38130 3.39194 3.44443 3.47992 3.71594 3.75071 3.78374 3.82486 3.88788 4.04643 4.23821 4.25815 4.26671 4.30571 4.36492 4.45369 4.49405 4.56888 4.59949 4.66202 4.70341 4.74995 4.75423 4.81323 4.87583 4.93370 4.98746 5.04632 5.08615 5.12184 5.18714 5.38975 5.45484 5.51140 6.25944 6.61662 6.69430 6.82551 6.92638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.455 3.545 4 O -0.543 6.543 5 C -0.100 4.100 6 C -0.095 4.095 7 H 0.094 0.906 8 C -0.116 4.116 9 C 0.105 3.895 10 H 0.088 0.912 11 N -0.691 5.691 12 C 0.560 3.440 13 O -0.583 6.583 14 C -0.154 4.154 15 C -0.056 4.056 16 C -0.116 4.116 17 C -0.108 4.108 18 C 0.161 3.839 19 O -0.489 6.489 20 C -0.124 4.124 21 C -0.060 4.060 22 O -0.557 6.557 23 Si 0.767 3.233 24 C -0.081 4.081 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.415 0.585 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.098 0.902 40 H 0.406 0.594 41 H -0.297 1.297 42 H -0.303 1.303 43 H 0.114 0.886 44 H 0.048 0.952 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -0.844 5.163 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.300 3.700 4 O -0.433 6.433 5 C -0.137 4.137 6 C -0.114 4.114 7 H 0.112 0.888 8 C -0.154 4.154 9 C 0.000 4.000 10 H 0.106 0.894 11 N -0.342 5.342 12 C 0.348 3.652 13 O -0.464 6.464 14 C -0.158 4.158 15 C -0.074 4.074 16 C -0.117 4.117 17 C -0.164 4.164 18 C 0.115 3.885 19 O -0.303 6.303 20 C -0.124 4.124 21 C -0.171 4.171 22 O -0.368 6.368 23 Si 0.675 3.325 24 C -0.100 4.100 25 C -0.189 4.189 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.183 0.817 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.275 0.725 39 H 0.116 0.884 40 H 0.258 0.742 41 H -0.225 1.225 42 H -0.231 1.231 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.162 -1.812 4.519 4.872 hybrid contribution -1.164 0.042 0.043 1.165 sum -1.326 -1.770 4.562 5.070 Atomic orbital electron populations 1.23467 0.75359 1.05425 1.02224 1.86515 1.24561 1.33566 1.83799 1.24573 0.93608 0.80813 0.71013 1.90674 1.68326 1.37437 1.46848 1.21579 0.85033 0.98812 1.08312 1.22437 0.97048 0.94394 0.97501 0.88814 1.23353 0.94866 0.97492 0.99693 1.22002 0.98440 0.81761 0.97827 0.89350 1.45455 1.61546 1.04554 1.22655 1.18376 0.77444 0.85020 0.84328 1.90772 1.45200 1.87982 1.22430 1.19817 1.06144 0.92316 0.97476 1.21387 0.94747 0.98872 0.92401 1.20540 1.00206 0.91600 0.99333 1.20772 1.00569 1.04410 0.90679 1.18368 0.94779 0.86016 0.89364 1.84635 1.42477 1.30597 1.72563 1.19877 1.03116 0.93972 0.95482 1.24454 0.94715 0.94295 1.03605 1.86387 1.30543 1.45053 1.74770 0.94772 0.74650 0.84967 0.78109 1.20970 0.98064 0.92066 0.98906 1.23569 0.97289 1.00023 0.98020 0.92462 0.85497 0.92082 0.85367 0.84541 0.85917 0.88848 0.74677 0.81704 0.89939 0.90286 0.89462 0.72464 0.88420 0.74240 1.22467 1.23149 0.86874 0.93320 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.69 10.57 -51.45 -0.54 -1.24 16 3 C 0.45 1.05 7.96 71.24 0.57 1.62 16 4 O -0.54 -5.02 15.51 21.95 0.34 -4.68 16 5 C -0.10 0.60 5.65 29.84 0.17 0.77 16 6 C -0.10 0.39 3.03 -10.27 -0.03 0.36 16 7 H 0.09 -0.20 7.68 -2.39 -0.02 -0.21 16 8 C -0.12 0.81 7.39 31.12 0.23 1.04 16 9 C 0.10 0.10 4.32 45.52 0.20 0.30 16 10 H 0.09 0.46 7.46 -2.39 -0.02 0.45 16 11 N -0.69 -1.72 5.21 -443.14 -2.31 -4.03 16 12 C 0.56 6.09 7.76 86.71 0.67 6.77 16 13 O -0.58 -11.60 15.94 -3.97 -0.06 -11.67 16 14 C -0.15 -1.33 5.88 -20.08 -0.12 -1.45 16 15 C -0.06 -0.08 9.18 22.51 0.21 0.13 16 16 C -0.12 -0.14 5.89 -19.81 -0.12 -0.26 16 17 C -0.11 0.48 9.78 71.24 0.70 1.18 16 18 C 0.16 0.66 6.66 22.63 0.15 0.81 16 19 O -0.49 -0.21 11.85 -90.34 -1.07 -1.28 16 20 C -0.12 -0.94 5.30 -19.81 -0.11 -1.05 16 21 C -0.06 -0.15 2.36 71.24 0.17 0.02 16 22 O -0.56 -0.16 12.86 -148.98 -1.92 -2.08 16 23 Si 0.77 2.82 30.19 68.60 2.07 4.90 16 24 C -0.08 -0.97 8.20 22.50 0.18 -0.78 16 25 C -0.15 -0.10 7.43 31.12 0.23 0.13 16 26 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 27 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 29 H 0.13 -1.19 7.84 -2.38 -0.02 -1.21 16 30 H 0.14 -1.48 8.14 -2.39 -0.02 -1.50 16 31 H 0.12 -1.28 8.10 -2.39 -0.02 -1.30 16 32 H 0.09 -0.84 8.14 -2.38 -0.02 -0.86 16 33 H 0.41 -1.57 6.72 -92.71 -0.62 -2.20 16 34 H 0.17 -1.01 6.39 -2.91 -0.02 -1.03 16 35 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.08 -0.41 7.53 -2.39 -0.02 -0.43 16 37 H 0.09 -0.65 8.08 -2.39 -0.02 -0.67 16 38 H 0.41 -2.75 9.06 -74.06 -0.67 -3.42 16 39 H 0.10 -0.07 7.82 -2.39 -0.02 -0.09 16 40 H 0.41 -4.09 8.74 -74.06 -0.65 -4.73 16 41 H -0.30 -3.17 7.11 99.48 0.71 -2.47 16 42 H -0.30 -3.95 6.75 99.48 0.67 -3.28 16 43 H 0.11 1.83 4.47 -2.91 -0.01 1.82 16 44 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.10 -0.16 7.89 -2.39 -0.02 -0.18 16 Total: 0.00 -31.61 378.09 -0.07 -31.69 By element: Atomic # 1 Polarization: -21.47 SS G_CDS: -0.88 Total: -22.35 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 4.30 Total: 10.73 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -2.31 Total: -4.03 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -3.25 Total: -20.94 kcal Atomic # 14 Polarization: 2.82 SS G_CDS: 2.07 Total: 4.90 kcal Total: -31.61 -0.07 -31.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.128 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds