Wall clock time and date at job start Sun Mar 7 2021 08:09:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34228 * 117.00195 * 2 1
4 4 O 1.20828 * 119.99854 * 359.97438 * 3 2 1
5 5 C 1.50705 * 120.00164 * 179.97438 * 3 2 1
6 6 C 1.52997 * 109.46731 * 180.02562 * 5 3 2
7 7 H 1.08994 * 112.85419 * 43.80485 * 6 5 3
8 8 C 1.53786 * 113.60950 * 174.99879 * 6 5 3
9 9 C 1.53783 * 87.07937 * 140.06244 * 8 6 5
10 10 H 1.09004 * 113.61659 * 219.93742 * 9 8 6
11 11 N 1.46503 * 113.61716 * 89.11597 * 9 8 6
12 12 C 1.34775 * 119.99923 * 156.52787 * 11 9 8
13 13 O 1.21276 * 120.00280 * 359.97438 * 12 11 9
14 14 C 1.50706 * 119.99531 * 180.02562 * 12 11 9
15 15 O 1.42895 * 109.46727 * 180.02562 * 14 12 11
16 16 C 1.35901 * 117.00002 * 180.02562 * 15 14 12
17 17 C 1.38709 * 120.05787 * 180.02562 * 16 15 14
18 18 C 1.50696 * 120.02762 * 359.95504 * 17 16 15
19 19 O 1.42903 * 109.46812 * 284.99740 * 18 17 16
20 20 Si 1.86303 * 109.47122 * 165.00264 * 18 17 16
21 21 C 1.38171 * 119.94081 * 179.97438 * 17 16 15
22 22 C 1.38240 * 120.06065 * 0.02562 * 21 17 16
23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17
24 24 C 1.38120 * 120.05704 * 359.97438 * 23 22 21
25 25 C 1.53780 * 87.17499 * 334.52308 * 9 8 6
26 26 H 1.09007 * 109.46926 * 60.00510 * 1 2 3
27 27 H 1.09000 * 109.46915 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47338 * 300.00446 * 1 2 3
29 29 H 1.08999 * 109.46736 * 60.00019 * 5 3 2
30 30 H 1.09000 * 109.46988 * 299.99703 * 5 3 2
31 31 H 1.08998 * 113.61737 * 25.51764 * 8 6 5
32 32 H 1.08997 * 113.61892 * 254.60839 * 8 6 5
33 33 H 0.97000 * 119.99273 * 336.53300 * 11 9 8
34 34 H 1.09001 * 109.47274 * 59.99532 * 14 12 11
35 35 H 1.09003 * 109.46605 * 299.99484 * 14 12 11
36 36 H 1.08994 * 109.47600 * 44.99862 * 18 17 16
37 37 H 0.96698 * 114.00104 * 300.00361 * 19 18 17
38 38 H 1.48496 * 110.00123 * 58.67629 * 20 18 17
39 39 H 1.48505 * 110.00066 * 179.97438 * 20 18 17
40 40 H 1.08005 * 119.97011 * 180.02562 * 21 17 16
41 41 H 1.07995 * 119.94494 * 180.27435 * 22 21 17
42 42 H 1.07997 * 119.96986 * 179.97438 * 23 22 21
43 43 H 1.08001 * 120.02657 * 180.02562 * 24 23 22
44 44 H 1.09002 * 113.61594 * 140.01704 * 25 9 8
45 45 H 1.09002 * 113.62035 * 270.92756 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 0.0006
6 6 4.0001 2.7420 0.0011
7 1 3.4247 3.3533 0.6963
8 6 5.5208 2.9347 0.1246
9 6 5.3815 4.0687 -0.9048
10 1 6.1884 4.0954 -1.6371
11 7 5.1156 5.3779 -0.3033
12 6 5.4295 6.5039 -0.9742
13 8 5.9324 6.4335 -2.0755
14 6 5.1565 7.8506 -0.3552
15 8 5.5728 8.8809 -1.2535
16 6 5.3957 10.1647 -0.8446
17 6 5.7769 11.2147 -1.6669
18 6 6.3891 10.9330 -3.0148
19 8 7.7381 10.4939 -2.8428
20 14 6.3680 12.4862 -4.0434
21 6 5.5953 12.5191 -1.2490
22 6 5.0346 12.7782 -0.0122
23 6 4.6546 11.7331 0.8099
24 6 4.8341 10.4274 0.3968
25 6 4.1165 3.3537 -1.4080
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5139 0.8899
29 1 3.9564 0.7805 -0.8892
30 1 3.9557 0.7809 0.8909
31 1 6.0995 2.0850 -0.2377
32 1 5.8392 3.2759 1.1096
33 1 4.7137 5.4342 0.5777
34 1 5.7084 7.9390 0.5806
35 1 4.0890 7.9502 -0.1583
36 1 5.8155 10.1554 -3.5191
37 1 8.3077 11.1374 -2.3996
38 1 7.1201 13.5637 -3.3516
39 1 6.9697 12.2218 -5.3751
40 1 5.8916 13.3370 -1.8891
41 1 4.8894 13.7985 0.3108
42 1 4.2172 11.9381 1.7758
43 1 4.5368 9.6116 1.0391
44 1 3.3017 4.0328 -1.6593
45 1 4.3118 2.6182 -2.1885
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16627170_2989392.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:09:44
Heat of formation + Delta-G solvation = -127.131230 kcal
Electronic energy + Delta-G solvation = -28331.631472 eV
Core-core repulsion = 24089.653501 eV
Total energy + Delta-G solvation = -4241.977971 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 336.150 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.82750 -41.49151 -40.88372 -39.50818 -38.31833 -37.45510 -37.40447 -34.72942
-32.74687 -31.88703 -31.16568 -29.37919 -28.37303 -26.84818 -26.60104 -24.82187
-23.56653 -22.60248 -21.89854 -21.83567 -20.33744 -19.47059 -18.61516 -18.32323
-18.00048 -17.66412 -17.51782 -17.44170 -17.04972 -16.89396 -16.45397 -15.96219
-15.81998 -15.52445 -15.47876 -15.08804 -14.97660 -14.84868 -14.71151 -14.15924
-14.09364 -13.79030 -13.60870 -13.47049 -13.42720 -13.03444 -13.02741 -12.82259
-12.48467 -12.24008 -12.15466 -11.81689 -11.80576 -11.73980 -11.54159 -11.40069
-11.35504 -10.86021 -10.37934 -10.14458 -9.99618 -9.20248 -4.87499 0.21655
0.41377 1.20646 1.39521 1.44628 1.51134 1.64729 1.70727 2.05694
2.55705 2.68267 3.29570 3.32587 3.47032 3.55911 3.61798 3.69619
3.74257 3.80457 3.82418 3.88053 3.93674 4.03348 4.14237 4.20476
4.24157 4.26850 4.29548 4.34498 4.38749 4.52375 4.55659 4.59683
4.61656 4.72003 4.73333 4.93642 4.99025 4.99155 5.06295 5.26355
5.32364 5.40125 5.48516 5.48652 5.69623 6.24906 6.39889 6.61750
6.73711 7.12554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.362 6.362
3 C 0.459 3.541
4 O -0.505 6.505
5 C -0.106 4.106
6 C -0.103 4.103
7 H 0.102 0.898
8 C -0.138 4.138
9 C 0.122 3.878
10 H 0.107 0.893
11 N -0.711 5.711
12 C 0.518 3.482
13 O -0.506 6.506
14 C 0.039 3.961
15 O -0.277 6.277
16 C 0.152 3.848
17 C -0.146 4.146
18 C -0.065 4.065
19 O -0.520 6.520
20 Si 0.689 3.311
21 C -0.083 4.083
22 C -0.151 4.151
23 C -0.072 4.072
24 C -0.212 4.212
25 C -0.146 4.146
26 H 0.063 0.937
27 H 0.103 0.897
28 H 0.063 0.937
29 H 0.110 0.890
30 H 0.110 0.890
31 H 0.102 0.898
32 H 0.079 0.921
33 H 0.402 0.598
34 H 0.094 0.906
35 H 0.095 0.905
36 H 0.118 0.882
37 H 0.370 0.630
38 H -0.260 1.260
39 H -0.257 1.257
40 H 0.135 0.865
41 H 0.129 0.871
42 H 0.128 0.872
43 H 0.129 0.871
44 H 0.076 0.924
45 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.886 -1.560 5.471 6.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.279 6.279
3 C 0.302 3.698
4 O -0.393 6.393
5 C -0.143 4.143
6 C -0.121 4.121
7 H 0.120 0.880
8 C -0.176 4.176
9 C 0.017 3.983
10 H 0.125 0.875
11 N -0.365 5.365
12 C 0.303 3.697
13 O -0.379 6.379
14 C -0.040 4.040
15 O -0.189 6.189
16 C 0.106 3.894
17 C -0.147 4.147
18 C -0.175 4.175
19 O -0.325 6.325
20 Si 0.591 3.409
21 C -0.101 4.101
22 C -0.169 4.169
23 C -0.090 4.090
24 C -0.231 4.231
25 C -0.185 4.185
26 H 0.082 0.918
27 H 0.121 0.879
28 H 0.082 0.918
29 H 0.128 0.872
30 H 0.128 0.872
31 H 0.120 0.880
32 H 0.098 0.902
33 H 0.237 0.763
34 H 0.112 0.888
35 H 0.112 0.888
36 H 0.136 0.864
37 H 0.216 0.784
38 H -0.186 1.186
39 H -0.182 1.182
40 H 0.152 0.848
41 H 0.147 0.853
42 H 0.146 0.854
43 H 0.147 0.853
44 H 0.095 0.905
45 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -2.412 -1.322 3.714 4.621
hybrid contribution 0.273 -0.231 1.551 1.592
sum -2.139 -1.553 5.265 5.891
Atomic orbital electron populations
1.23300 0.75952 1.03954 1.02668 1.86510 1.23783 1.33554 1.84036
1.23846 0.92328 0.81370 0.72283 1.90684 1.67275 1.36336 1.44977
1.21452 0.87533 0.99115 1.06199 1.22587 0.96271 0.94014 0.99242
0.87975 1.23398 0.95655 0.98537 1.00038 1.21800 0.98770 0.81183
0.96532 0.87492 1.45464 1.64791 1.04774 1.21455 1.20009 0.78604
0.85074 0.86010 1.90802 1.40919 1.86898 1.19249 1.22463 1.01762
0.86157 0.93584 1.86234 1.78624 1.11565 1.42478 1.18797 0.94541
0.83509 0.92536 1.19637 1.05606 0.91379 0.98042 1.24902 0.84390
1.11030 0.97169 1.86706 1.19519 1.45071 1.81240 0.95114 0.91344
0.75554 0.78937 1.21045 0.97521 0.94980 0.96567 1.21062 1.01685
0.99602 0.94599 1.21026 0.96821 0.91807 0.99388 1.21298 1.06705
0.98575 0.96502 1.23573 0.98491 1.00096 0.96348 0.91778 0.87904
0.91800 0.87231 0.87231 0.87983 0.90248 0.76293 0.88843 0.88761
0.86418 0.78372 1.18564 1.18200 0.84774 0.85329 0.85375 0.85274
0.90510 0.88828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16
2 O -0.36 -0.32 10.56 -39.25 -0.41 -0.73 16
3 C 0.46 0.40 7.96 36.01 0.29 0.69 16
4 O -0.51 -1.90 15.51 -18.75 -0.29 -2.19 16
5 C -0.11 0.27 5.65 -27.88 -0.16 0.12 16
6 C -0.10 0.24 3.04 -89.66 -0.27 -0.03 16
7 H 0.10 -0.16 7.68 -51.93 -0.40 -0.56 16
8 C -0.14 0.47 7.38 -25.91 -0.19 0.28 16
9 C 0.12 -0.11 4.30 -67.12 -0.29 -0.40 16
10 H 0.11 0.10 7.50 -51.93 -0.39 -0.29 16
11 N -0.71 0.79 5.26 -53.01 -0.28 0.51 16
12 C 0.52 1.10 7.91 -10.98 -0.09 1.02 16
13 O -0.51 -3.66 16.12 -14.35 -0.23 -3.89 16
14 C 0.04 0.00 5.22 36.01 0.19 0.18 16
15 O -0.28 -1.04 9.00 -39.34 -0.35 -1.39 16
16 C 0.15 0.37 6.66 -39.21 -0.26 0.11 16
17 C -0.15 -0.30 5.27 -104.47 -0.55 -0.85 16
18 C -0.07 -0.17 2.38 36.00 0.09 -0.09 16
19 O -0.52 -2.26 12.88 -35.23 -0.45 -2.71 16
20 Si 0.69 0.40 30.25 -169.99 -5.14 -4.74 16
21 C -0.08 -0.04 8.66 -39.61 -0.34 -0.38 16
22 C -0.15 0.04 10.04 -39.56 -0.40 -0.36 16
23 C -0.07 0.03 10.04 -39.60 -0.40 -0.37 16
24 C -0.21 -0.05 9.04 -39.43 -0.36 -0.40 16
25 C -0.15 0.12 7.45 -25.77 -0.19 -0.07 16
26 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16
27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16
28 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16
29 H 0.11 -0.43 7.86 -51.93 -0.41 -0.83 16
30 H 0.11 -0.47 8.14 -51.93 -0.42 -0.89 16
31 H 0.10 -0.45 8.10 -51.93 -0.42 -0.87 16
32 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16
33 H 0.40 -1.63 8.70 -40.82 -0.36 -1.98 16
34 H 0.09 -0.24 7.66 -51.93 -0.40 -0.64 16
35 H 0.09 -0.25 7.67 -51.93 -0.40 -0.64 16
36 H 0.12 0.42 7.83 -51.93 -0.41 0.02 16
37 H 0.37 0.30 8.70 45.56 0.40 0.70 16
38 H -0.26 -0.41 6.68 56.52 0.38 -0.03 16
39 H -0.26 -1.02 7.11 56.52 0.40 -0.62 16
40 H 0.13 -0.13 4.86 -52.48 -0.26 -0.39 16
41 H 0.13 -0.28 8.06 -52.49 -0.42 -0.71 16
42 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16
43 H 0.13 -0.29 6.30 -52.49 -0.33 -0.62 16
44 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16
45 H 0.09 -0.14 7.91 -51.93 -0.41 -0.55 16
LS Contribution 380.63 15.07 5.74 5.74
Total: 0.00 -11.66 380.63 -9.67 -21.33
By element:
Atomic # 1 Polarization: -6.04 SS G_CDS: -6.38 Total: -12.41 kcal
Atomic # 6 Polarization: 2.36 SS G_CDS: -1.87 Total: 0.50 kcal
Atomic # 7 Polarization: 0.79 SS G_CDS: -0.28 Total: 0.51 kcal
Atomic # 8 Polarization: -9.17 SS G_CDS: -1.74 Total: -10.92 kcal
Atomic # 14 Polarization: 0.40 SS G_CDS: -5.14 Total: -4.74 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -11.66 -9.67 -21.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_2989392.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.800 kcal
(2) G-P(sol) polarization free energy of solvation -11.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.457 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.131 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds