Wall clock time and date at job start Sun Mar 7 2021 08:09:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34228 * 117.00195 * 2 1
4 4 O 1.20828 * 119.99854 * 359.97438 * 3 2 1
5 5 C 1.50705 * 120.00164 * 179.97438 * 3 2 1
6 6 C 1.52997 * 109.46731 * 180.02562 * 5 3 2
7 7 H 1.08994 * 112.85419 * 43.80485 * 6 5 3
8 8 C 1.53786 * 113.60950 * 174.99879 * 6 5 3
9 9 C 1.53783 * 87.07937 * 140.06244 * 8 6 5
10 10 H 1.09004 * 113.61659 * 219.93742 * 9 8 6
11 11 N 1.46503 * 113.61716 * 89.11597 * 9 8 6
12 12 C 1.34775 * 119.99923 * 156.52787 * 11 9 8
13 13 O 1.21276 * 120.00280 * 359.97438 * 12 11 9
14 14 C 1.50706 * 119.99531 * 180.02562 * 12 11 9
15 15 O 1.42895 * 109.46727 * 180.02562 * 14 12 11
16 16 C 1.35901 * 117.00002 * 180.02562 * 15 14 12
17 17 C 1.38709 * 120.05787 * 180.02562 * 16 15 14
18 18 C 1.50696 * 120.02762 * 359.95504 * 17 16 15
19 19 O 1.42903 * 109.46812 * 284.99740 * 18 17 16
20 20 Si 1.86303 * 109.47122 * 165.00264 * 18 17 16
21 21 C 1.38171 * 119.94081 * 179.97438 * 17 16 15
22 22 C 1.38240 * 120.06065 * 0.02562 * 21 17 16
23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17
24 24 C 1.38120 * 120.05704 * 359.97438 * 23 22 21
25 25 C 1.53780 * 87.17499 * 334.52308 * 9 8 6
26 26 H 1.09007 * 109.46926 * 60.00510 * 1 2 3
27 27 H 1.09000 * 109.46915 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47338 * 300.00446 * 1 2 3
29 29 H 1.08999 * 109.46736 * 60.00019 * 5 3 2
30 30 H 1.09000 * 109.46988 * 299.99703 * 5 3 2
31 31 H 1.08998 * 113.61737 * 25.51764 * 8 6 5
32 32 H 1.08997 * 113.61892 * 254.60839 * 8 6 5
33 33 H 0.97000 * 119.99273 * 336.53300 * 11 9 8
34 34 H 1.09001 * 109.47274 * 59.99532 * 14 12 11
35 35 H 1.09003 * 109.46605 * 299.99484 * 14 12 11
36 36 H 1.08994 * 109.47600 * 44.99862 * 18 17 16
37 37 H 0.96698 * 114.00104 * 300.00361 * 19 18 17
38 38 H 1.48496 * 110.00123 * 58.67629 * 20 18 17
39 39 H 1.48505 * 110.00066 * 179.97438 * 20 18 17
40 40 H 1.08005 * 119.97011 * 180.02562 * 21 17 16
41 41 H 1.07995 * 119.94494 * 180.27435 * 22 21 17
42 42 H 1.07997 * 119.96986 * 179.97438 * 23 22 21
43 43 H 1.08001 * 120.02657 * 180.02562 * 24 23 22
44 44 H 1.09002 * 113.61594 * 140.01704 * 25 9 8
45 45 H 1.09002 * 113.62035 * 270.92756 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 0.0006
6 6 4.0001 2.7420 0.0011
7 1 3.4247 3.3533 0.6963
8 6 5.5208 2.9347 0.1246
9 6 5.3815 4.0687 -0.9048
10 1 6.1884 4.0954 -1.6371
11 7 5.1156 5.3779 -0.3033
12 6 5.4295 6.5039 -0.9742
13 8 5.9324 6.4335 -2.0755
14 6 5.1565 7.8506 -0.3552
15 8 5.5728 8.8809 -1.2535
16 6 5.3957 10.1647 -0.8446
17 6 5.7769 11.2147 -1.6669
18 6 6.3891 10.9330 -3.0148
19 8 7.7381 10.4939 -2.8428
20 14 6.3680 12.4862 -4.0434
21 6 5.5953 12.5191 -1.2490
22 6 5.0346 12.7782 -0.0122
23 6 4.6546 11.7331 0.8099
24 6 4.8341 10.4274 0.3968
25 6 4.1165 3.3537 -1.4080
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5139 0.8899
29 1 3.9564 0.7805 -0.8892
30 1 3.9557 0.7809 0.8909
31 1 6.0995 2.0850 -0.2377
32 1 5.8392 3.2759 1.1096
33 1 4.7137 5.4342 0.5777
34 1 5.7084 7.9390 0.5806
35 1 4.0890 7.9502 -0.1583
36 1 5.8155 10.1554 -3.5191
37 1 8.3077 11.1374 -2.3996
38 1 7.1201 13.5637 -3.3516
39 1 6.9697 12.2218 -5.3751
40 1 5.8916 13.3370 -1.8891
41 1 4.8894 13.7985 0.3108
42 1 4.2172 11.9381 1.7758
43 1 4.5368 9.6116 1.0391
44 1 3.3017 4.0328 -1.6593
45 1 4.3118 2.6182 -2.1885
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16627170_2989392.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:09:43
Heat of formation + Delta-G solvation = -128.970396 kcal
Electronic energy + Delta-G solvation = -28331.711224 eV
Core-core repulsion = 24089.653501 eV
Total energy + Delta-G solvation = -4242.057723 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 336.150 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.85187 -41.53509 -40.92856 -39.54686 -38.44041 -37.61878 -37.49088 -34.81712
-32.78020 -31.83340 -31.13794 -29.38407 -28.30647 -26.71118 -26.70337 -24.77601
-23.56202 -22.64398 -21.89060 -21.88614 -20.27251 -19.52373 -18.64437 -18.37160
-18.14899 -17.66469 -17.53462 -17.48957 -17.10930 -16.91247 -16.48410 -16.09739
-15.80081 -15.57403 -15.45268 -15.12523 -15.02861 -14.87569 -14.70062 -14.20748
-14.12957 -13.74878 -13.70298 -13.42421 -13.36653 -13.06526 -12.97893 -12.70591
-12.54259 -12.14823 -12.08495 -11.88929 -11.83761 -11.74475 -11.69001 -11.40961
-11.23096 -11.06242 -10.54482 -10.18866 -9.98377 -9.22599 -4.96188 0.22912
0.41308 1.17764 1.27802 1.37286 1.45214 1.53184 1.78711 1.92404
2.56677 2.69418 3.42734 3.44273 3.45643 3.49598 3.70721 3.76168
3.81661 3.87606 3.91333 3.95143 4.03422 4.12084 4.25328 4.27477
4.31003 4.36828 4.40310 4.48842 4.53011 4.59713 4.66460 4.68182
4.74390 4.79443 4.85435 4.97591 5.02123 5.08659 5.17583 5.27977
5.37118 5.41386 5.52550 5.55173 5.75618 6.25526 6.42506 6.52248
6.71129 7.07360
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.369 6.369
3 C 0.455 3.545
4 O -0.542 6.542
5 C -0.101 4.101
6 C -0.094 4.094
7 H 0.096 0.904
8 C -0.117 4.117
9 C 0.110 3.890
10 H 0.083 0.917
11 N -0.694 5.694
12 C 0.514 3.486
13 O -0.569 6.569
14 C 0.038 3.962
15 O -0.313 6.313
16 C 0.128 3.872
17 C -0.164 4.164
18 C -0.084 4.084
19 O -0.549 6.549
20 Si 0.783 3.217
21 C -0.088 4.088
22 C -0.154 4.154
23 C -0.075 4.075
24 C -0.213 4.213
25 C -0.151 4.151
26 H 0.057 0.943
27 H 0.126 0.874
28 H 0.061 0.939
29 H 0.127 0.873
30 H 0.136 0.864
31 H 0.119 0.881
32 H 0.094 0.906
33 H 0.419 0.581
34 H 0.122 0.878
35 H 0.121 0.879
36 H 0.095 0.905
37 H 0.381 0.619
38 H -0.263 1.263
39 H -0.308 1.308
40 H 0.147 0.853
41 H 0.151 0.849
42 H 0.154 0.846
43 H 0.153 0.847
44 H 0.050 0.950
45 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.230 -1.464 7.919 8.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.285 6.285
3 C 0.300 3.700
4 O -0.432 6.432
5 C -0.138 4.138
6 C -0.113 4.113
7 H 0.114 0.886
8 C -0.154 4.154
9 C 0.004 3.996
10 H 0.102 0.898
11 N -0.347 5.347
12 C 0.300 3.700
13 O -0.447 6.447
14 C -0.040 4.040
15 O -0.225 6.225
16 C 0.082 3.918
17 C -0.165 4.165
18 C -0.191 4.191
19 O -0.357 6.357
20 Si 0.687 3.313
21 C -0.105 4.105
22 C -0.171 4.171
23 C -0.092 4.092
24 C -0.231 4.231
25 C -0.190 4.190
26 H 0.076 0.924
27 H 0.145 0.855
28 H 0.079 0.921
29 H 0.145 0.855
30 H 0.153 0.847
31 H 0.137 0.863
32 H 0.113 0.887
33 H 0.257 0.743
34 H 0.140 0.860
35 H 0.139 0.861
36 H 0.113 0.887
37 H 0.230 0.770
38 H -0.189 1.189
39 H -0.236 1.236
40 H 0.164 0.836
41 H 0.169 0.831
42 H 0.171 0.829
43 H 0.171 0.829
44 H 0.069 0.931
45 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -2.787 -1.262 6.247 6.956
hybrid contribution 0.335 -0.341 0.797 0.929
sum -2.452 -1.602 7.044 7.628
Atomic orbital electron populations
1.23468 0.75349 1.05420 1.02245 1.86514 1.24582 1.33637 1.83808
1.24574 0.93606 0.80806 0.71019 1.90669 1.68314 1.37387 1.46827
1.21589 0.85027 0.99049 1.08179 1.22488 0.97048 0.94196 0.97561
0.88622 1.23335 0.94807 0.97483 0.99812 1.21903 0.98108 0.81990
0.97555 0.89839 1.45373 1.63489 1.04128 1.21747 1.20548 0.77562
0.86558 0.85325 1.90769 1.44132 1.87814 1.22018 1.22683 1.03707
0.84040 0.93611 1.86187 1.79405 1.12688 1.44268 1.19090 0.95825
0.83084 0.93759 1.19715 1.06592 0.92368 0.97825 1.25229 0.83497
1.11789 0.98617 1.86650 1.20662 1.46617 1.81722 0.94027 0.89580
0.73270 0.74443 1.21198 0.97595 0.94428 0.97318 1.21409 1.00729
1.00912 0.94096 1.21400 0.96141 0.91375 1.00320 1.21591 1.05858
0.99868 0.95784 1.23606 0.97507 1.00032 0.97837 0.92427 0.85539
0.92055 0.85540 0.84654 0.86305 0.88699 0.74301 0.86032 0.86110
0.88734 0.77001 1.18891 1.23622 0.83556 0.83116 0.82860 0.82928
0.93119 0.88281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16
2 O -0.37 -0.58 10.56 -51.40 -0.54 -1.13 16
3 C 0.45 0.82 7.96 71.24 0.57 1.38 16
4 O -0.54 -4.60 15.51 21.96 0.34 -4.26 16
5 C -0.10 0.65 5.65 29.85 0.17 0.82 16
6 C -0.09 0.49 3.04 -10.17 -0.03 0.46 16
7 H 0.10 -0.33 7.68 -2.39 -0.02 -0.35 16
8 C -0.12 0.94 7.38 31.12 0.23 1.17 16
9 C 0.11 -0.08 4.30 45.52 0.20 0.11 16
10 H 0.08 0.36 7.50 -2.39 -0.02 0.35 16
11 N -0.69 0.98 5.26 -440.02 -2.32 -1.33 16
12 C 0.51 3.16 7.91 87.66 0.69 3.85 16
13 O -0.57 -10.32 16.12 16.02 0.26 -10.06 16
14 C 0.04 0.02 5.22 71.24 0.37 0.39 16
15 O -0.31 -2.99 9.00 -73.40 -0.66 -3.65 16
16 C 0.13 0.74 6.66 22.51 0.15 0.89 16
17 C -0.16 -0.88 5.27 -19.77 -0.10 -0.98 16
18 C -0.08 -0.64 2.38 71.23 0.17 -0.47 16
19 O -0.55 -6.30 12.88 -148.98 -1.92 -8.22 16
20 Si 0.78 1.71 30.25 68.60 2.08 3.79 16
21 C -0.09 -0.05 8.66 22.25 0.19 0.14 16
22 C -0.15 0.32 10.04 22.28 0.22 0.54 16
23 C -0.07 0.20 10.04 22.26 0.22 0.42 16
24 C -0.21 0.10 9.04 22.37 0.20 0.30 16
25 C -0.15 0.07 7.45 31.21 0.23 0.30 16
26 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16
27 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16
28 H 0.06 -0.07 8.13 -2.39 -0.02 -0.08 16
29 H 0.13 -1.19 7.86 -2.39 -0.02 -1.21 16
30 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16
31 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16
32 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16
33 H 0.42 -3.56 8.70 -92.71 -0.81 -4.36 16
34 H 0.12 -0.71 7.66 -2.39 -0.02 -0.73 16
35 H 0.12 -0.67 7.67 -2.39 -0.02 -0.69 16
36 H 0.09 1.06 7.83 -2.39 -0.02 1.04 16
37 H 0.38 1.45 8.70 -74.06 -0.64 0.81 16
38 H -0.26 -0.66 6.68 99.48 0.66 0.00 16
39 H -0.31 -3.21 7.11 99.48 0.71 -2.50 16
40 H 0.15 -0.41 4.86 -2.91 -0.01 -0.42 16
41 H 0.15 -1.04 8.06 -2.91 -0.02 -1.06 16
42 H 0.15 -1.23 8.06 -2.91 -0.02 -1.26 16
43 H 0.15 -0.97 6.30 -2.91 -0.02 -0.99 16
44 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16
45 H 0.10 -0.20 7.91 -2.39 -0.02 -0.21 16
Total: 0.00 -32.06 380.63 1.49 -30.57
By element:
Atomic # 1 Polarization: -15.79 SS G_CDS: -0.42 Total: -16.21 kcal
Atomic # 6 Polarization: 5.82 SS G_CDS: 4.68 Total: 10.50 kcal
Atomic # 7 Polarization: 0.98 SS G_CDS: -2.32 Total: -1.33 kcal
Atomic # 8 Polarization: -24.79 SS G_CDS: -2.52 Total: -27.31 kcal
Atomic # 14 Polarization: 1.71 SS G_CDS: 2.08 Total: 3.79 kcal
Total: -32.06 1.49 -30.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_2989392.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.403 kcal
(2) G-P(sol) polarization free energy of solvation -32.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds