Wall clock time and date at job start Sun Mar 7 2021 08:09:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34233 * 116.99589 * 2 1
4 4 O 1.20820 * 120.00010 * 359.97438 * 3 2 1
5 5 C 1.50697 * 119.99606 * 180.02562 * 3 2 1
6 6 C 1.52998 * 109.47209 * 179.97438 * 5 3 2
7 7 H 1.08997 * 112.84789 * 316.19730 * 6 5 3
8 8 C 1.53962 * 113.74183 * 87.39821 * 6 5 3
9 9 C 1.53786 * 87.01719 * 139.94755 * 8 6 5
10 10 H 1.09002 * 113.61357 * 220.04719 * 9 8 6
11 11 N 1.46497 * 113.61643 * 89.22773 * 9 8 6
12 12 C 1.34780 * 119.99653 * 105.85894 * 11 9 8
13 13 O 1.21270 * 120.00163 * 0.02562 * 12 11 9
14 14 C 1.50711 * 119.99583 * 179.97438 * 12 11 9
15 15 O 1.42904 * 109.46830 * 180.02562 * 14 12 11
16 16 C 1.35899 * 116.99762 * 180.02562 * 15 14 12
17 17 C 1.38733 * 120.05549 * 359.72588 * 16 15 14
18 18 C 1.38148 * 119.93809 * 179.74526 * 17 16 15
19 19 C 1.38260 * 120.05821 * 0.50884 * 18 17 16
20 20 C 1.50697 * 119.94286 * 179.74523 * 19 18 17
21 21 O 1.42901 * 109.47357 * 120.02501 * 20 19 18
22 22 Si 1.86295 * 109.47225 * 0.02562 * 20 19 18
23 23 C 1.38262 * 120.11065 * 359.76803 * 19 18 17
24 24 C 1.38145 * 120.06056 * 359.97438 * 23 19 18
25 25 C 1.53781 * 87.17350 * 334.63802 * 9 8 6
26 26 H 1.08997 * 109.46904 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47308 * 299.99964 * 1 2 3
28 28 H 1.09005 * 109.46895 * 60.00356 * 1 2 3
29 29 H 1.09004 * 109.47521 * 59.99861 * 5 3 2
30 30 H 1.09000 * 109.47260 * 299.99495 * 5 3 2
31 31 H 1.08993 * 113.61598 * 25.42737 * 8 6 5
32 32 H 1.09000 * 113.66569 * 254.47092 * 8 6 5
33 33 H 0.96995 * 120.00146 * 285.86755 * 11 9 8
34 34 H 1.08992 * 109.47059 * 300.00404 * 14 12 11
35 35 H 1.08997 * 109.46986 * 60.00582 * 14 12 11
36 36 H 1.08000 * 120.02821 * 359.97438 * 17 16 15
37 37 H 1.08001 * 119.96844 * 180.22903 * 18 17 16
38 38 H 1.09004 * 109.46917 * 240.02028 * 20 19 18
39 39 H 0.96703 * 113.99237 * 300.00135 * 21 20 19
40 40 H 1.48503 * 110.00068 * 58.68190 * 22 20 19
41 41 H 1.48502 * 110.00318 * 179.97438 * 22 20 19
42 42 H 1.08007 * 119.96865 * 179.97438 * 23 19 18
43 43 H 1.07999 * 120.02992 * 179.97438 * 24 23 19
44 44 H 1.09001 * 113.61695 * 139.93969 * 25 9 8
45 45 H 1.08996 * 113.61580 * 270.76247 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1961 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5662 1.2749 -0.0006
6 6 4.0001 2.7421 -0.0011
7 1 3.4246 3.3534 -0.6963
8 6 4.1150 3.3551 1.4066
9 6 5.3813 4.0690 0.9048
10 1 6.1875 4.0948 1.6379
11 7 5.1174 5.3783 0.3031
12 6 5.4315 6.5041 0.9744
13 8 5.9330 6.4331 2.0762
14 6 5.1605 7.8511 0.3551
15 8 5.5778 8.8810 1.2536
16 6 5.4016 10.1650 0.8448
17 6 4.8438 10.4282 -0.3979
18 6 4.6609 11.7344 -0.8088
19 6 5.0428 12.7788 0.0128
20 6 4.8474 14.2026 -0.4405
21 8 3.9892 14.8816 0.4786
22 14 4.0750 14.2142 -2.1357
23 6 5.6042 12.5190 1.2493
24 6 5.7844 11.2147 1.6672
25 6 5.5208 2.9349 -0.1244
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 3.9557 0.7810 -0.8908
30 1 3.9563 0.7807 0.8892
31 1 4.3086 2.6205 2.1882
32 1 3.3002 4.0349 1.6556
33 1 4.7165 5.4351 -0.5783
34 1 5.7137 7.9389 -0.5799
35 1 4.0935 7.9518 0.1569
36 1 4.5495 9.6127 -1.0419
37 1 4.2233 11.9399 -1.7746
38 1 5.8125 14.7079 -0.4774
39 1 3.1109 14.4857 0.5624
40 1 2.7730 13.5005 -2.1056
41 1 3.8764 15.6128 -2.5939
42 1 5.9021 13.3366 1.8891
43 1 6.2233 11.0123 2.6330
44 1 5.8391 3.2760 -1.1095
45 1 6.1006 2.0858 0.2373
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16627170_2989410.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:09:47
Heat of formation + Delta-G solvation = -131.678237 kcal
Electronic energy + Delta-G solvation = -27679.664698 eV
Core-core repulsion = 23437.489554 eV
Total energy + Delta-G solvation = -4242.175144 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 336.150 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.82789 -41.49184 -40.89334 -39.63148 -38.84521 -37.49687 -37.23725 -34.79883
-32.45826 -31.82113 -31.60425 -29.55103 -28.32222 -26.68880 -26.26299 -24.74491
-23.93275 -22.53091 -21.87735 -21.85036 -20.25041 -19.50780 -18.65659 -18.45379
-18.24193 -17.66607 -17.52770 -17.45817 -17.09830 -16.82221 -16.36117 -16.15766
-15.76738 -15.62109 -15.51211 -15.11736 -14.91739 -14.70202 -14.62544 -14.37893
-14.12482 -13.76483 -13.69196 -13.50870 -13.39103 -13.34810 -12.97416 -12.68586
-12.30683 -12.16049 -12.07687 -12.05574 -11.83324 -11.73177 -11.63953 -11.39315
-11.20866 -11.04822 -10.59831 -10.16640 -10.04746 -9.24798 -4.91220 0.26158
0.29864 1.18648 1.33571 1.39217 1.45449 1.61389 1.79720 1.98328
2.56928 2.63940 3.43065 3.45160 3.47616 3.51256 3.72489 3.77813
3.81559 3.84396 3.92641 3.93366 4.01433 4.07996 4.25557 4.27580
4.29913 4.41472 4.42424 4.51001 4.55482 4.61650 4.68497 4.68751
4.76339 4.82043 4.88106 4.96406 5.04337 5.11071 5.14928 5.20051
5.24544 5.42385 5.48309 5.57345 5.69051 6.24335 6.43539 6.49743
6.71876 7.09268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.369 6.369
3 C 0.454 3.546
4 O -0.542 6.542
5 C -0.102 4.102
6 C -0.095 4.095
7 H 0.096 0.904
8 C -0.152 4.152
9 C 0.111 3.889
10 H 0.086 0.914
11 N -0.694 5.694
12 C 0.514 3.486
13 O -0.572 6.572
14 C 0.037 3.963
15 O -0.320 6.320
16 C 0.120 3.880
17 C -0.201 4.201
18 C -0.075 4.075
19 C -0.158 4.158
20 C -0.082 4.082
21 O -0.551 6.551
22 Si 0.772 3.228
23 C -0.060 4.060
24 C -0.166 4.166
25 C -0.116 4.116
26 H 0.126 0.874
27 H 0.057 0.943
28 H 0.060 0.940
29 H 0.136 0.864
30 H 0.127 0.873
31 H 0.098 0.902
32 H 0.049 0.951
33 H 0.420 0.580
34 H 0.131 0.869
35 H 0.122 0.878
36 H 0.164 0.836
37 H 0.154 0.846
38 H 0.122 0.878
39 H 0.385 0.615
40 H -0.280 1.280
41 H -0.307 1.307
42 H 0.134 0.866
43 H 0.126 0.874
44 H 0.096 0.904
45 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.350 -6.450 -8.198 10.438
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.286 6.286
3 C 0.300 3.700
4 O -0.432 6.432
5 C -0.139 4.139
6 C -0.114 4.114
7 H 0.114 0.886
8 C -0.191 4.191
9 C 0.005 3.995
10 H 0.104 0.896
11 N -0.347 5.347
12 C 0.301 3.699
13 O -0.450 6.450
14 C -0.041 4.041
15 O -0.233 6.233
16 C 0.075 3.925
17 C -0.219 4.219
18 C -0.093 4.093
19 C -0.159 4.159
20 C -0.191 4.191
21 O -0.360 6.360
22 Si 0.678 3.322
23 C -0.078 4.078
24 C -0.185 4.185
25 C -0.154 4.154
26 H 0.144 0.856
27 H 0.075 0.925
28 H 0.079 0.921
29 H 0.154 0.846
30 H 0.144 0.856
31 H 0.117 0.883
32 H 0.068 0.932
33 H 0.258 0.742
34 H 0.149 0.851
35 H 0.139 0.861
36 H 0.181 0.819
37 H 0.171 0.829
38 H 0.140 0.860
39 H 0.235 0.765
40 H -0.206 1.206
41 H -0.236 1.236
42 H 0.152 0.848
43 H 0.144 0.856
44 H 0.114 0.886
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 0.408 -5.688 -7.645 9.538
hybrid contribution -1.528 0.318 0.995 1.851
sum -1.121 -5.370 -6.650 8.621
Atomic orbital electron populations
1.23463 0.75387 1.05406 1.02221 1.86518 1.24549 1.33682 1.83817
1.24599 0.93654 0.80783 0.71001 1.90666 1.68328 1.37395 1.46840
1.21595 0.84934 0.99149 1.08179 1.22482 0.97185 0.94120 0.97602
0.88626 1.23596 0.97598 1.00066 0.97850 1.21900 0.98033 0.81993
0.97549 0.89611 1.45381 1.63461 1.04139 1.21738 1.20565 0.77500
0.86587 0.85287 1.90757 1.44412 1.87861 1.22001 1.22740 1.03975
0.83634 0.93749 1.86128 1.79620 1.12754 1.44806 1.19232 0.96087
0.83152 0.94038 1.21499 1.05330 0.99092 0.95961 1.21065 0.97293
0.91572 0.99334 1.20294 1.03501 0.95972 0.96127 1.25246 0.99670
0.90451 1.03690 1.86569 1.28762 1.56863 1.63765 0.94148 0.82243
0.78716 0.77139 1.20909 0.95816 0.95345 0.95723 1.20624 1.05571
0.91227 1.01075 1.23330 0.94651 0.97509 0.99900 0.85560 0.92452
0.92075 0.84640 0.85552 0.88334 0.93207 0.74209 0.85120 0.86067
0.81856 0.82933 0.85997 0.76549 1.20620 1.23572 0.84814 0.85579
0.88577 0.86329
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16
2 O -0.37 -0.40 10.57 -51.45 -0.54 -0.94 16
3 C 0.45 0.52 7.96 71.24 0.57 1.09 16
4 O -0.54 -4.26 15.51 21.98 0.34 -3.92 16
5 C -0.10 0.74 5.65 29.85 0.17 0.91 16
6 C -0.10 0.61 3.04 -10.21 -0.03 0.58 16
7 H 0.10 -0.44 7.68 -2.39 -0.02 -0.46 16
8 C -0.15 0.27 7.45 31.18 0.23 0.50 16
9 C 0.11 -0.29 4.29 45.52 0.20 -0.10 16
10 H 0.09 0.18 7.50 -2.39 -0.02 0.16 16
11 N -0.69 2.52 5.27 -440.03 -2.32 0.20 16
12 C 0.51 1.76 7.91 87.66 0.69 2.45 16
13 O -0.57 -8.67 16.12 16.04 0.26 -8.41 16
14 C 0.04 -0.10 5.22 71.24 0.37 0.28 16
15 O -0.32 -2.09 9.67 -73.38 -0.71 -2.80 16
16 C 0.12 0.47 6.69 22.51 0.15 0.62 16
17 C -0.20 0.43 9.04 22.37 0.20 0.64 16
18 C -0.08 0.19 8.66 22.25 0.19 0.38 16
19 C -0.16 -0.06 5.39 -19.85 -0.11 -0.17 16
20 C -0.08 0.04 2.82 71.23 0.20 0.24 16
21 O -0.55 -1.79 12.77 -148.98 -1.90 -3.69 16
22 Si 0.77 -2.19 29.78 68.60 2.04 -0.14 16
23 C -0.06 -0.19 9.60 22.25 0.21 0.03 16
24 C -0.17 -0.88 9.99 22.37 0.22 -0.66 16
25 C -0.12 1.12 7.38 31.12 0.23 1.35 16
26 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16
27 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16
28 H 0.06 -0.09 8.13 -2.38 -0.02 -0.11 16
29 H 0.14 -1.63 8.14 -2.38 -0.02 -1.65 16
30 H 0.13 -1.30 7.86 -2.39 -0.02 -1.32 16
31 H 0.10 -0.31 7.91 -2.39 -0.02 -0.33 16
32 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16
33 H 0.42 -4.49 8.71 -92.71 -0.81 -5.29 16
34 H 0.13 -1.29 7.65 -2.39 -0.02 -1.31 16
35 H 0.12 -0.99 7.67 -2.39 -0.02 -1.01 16
36 H 0.16 -1.53 6.30 -2.91 -0.02 -1.55 16
37 H 0.15 -1.16 4.87 -2.91 -0.01 -1.17 16
38 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16
39 H 0.39 -0.87 8.70 -74.06 -0.64 -1.52 16
40 H -0.28 -0.10 7.11 99.48 0.71 0.61 16
41 H -0.31 -1.70 7.11 99.48 0.71 -1.00 16
42 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16
43 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16
44 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16
45 H 0.12 -1.46 8.10 -2.39 -0.02 -1.48 16
Total: 0.00 -30.58 381.39 1.49 -29.09
By element:
Atomic # 1 Polarization: -18.28 SS G_CDS: -0.38 Total: -18.66 kcal
Atomic # 6 Polarization: 4.57 SS G_CDS: 4.70 Total: 9.27 kcal
Atomic # 7 Polarization: 2.52 SS G_CDS: -2.32 Total: 0.20 kcal
Atomic # 8 Polarization: -17.21 SS G_CDS: -2.56 Total: -19.76 kcal
Atomic # 14 Polarization: -2.19 SS G_CDS: 2.04 Total: -0.14 kcal
Total: -30.58 1.49 -29.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_2989410.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.584 kcal
(2) G-P(sol) polarization free energy of solvation -30.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds