Wall clock time and date at job start Sun Mar 7 2021 08:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00317 * 2 1 4 4 O 1.20832 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00522 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47423 * 179.97438 * 5 3 2 7 7 H 1.08999 * 112.84834 * 43.80646 * 6 5 3 8 8 C 1.53778 * 113.61263 * 174.99752 * 6 5 3 9 9 C 1.53787 * 87.08035 * 139.98349 * 8 6 5 10 10 H 1.08994 * 113.61447 * 220.02014 * 9 8 6 11 11 N 1.46496 * 113.61210 * 89.11438 * 9 8 6 12 12 C 1.34774 * 120.00099 * 155.00440 * 11 9 8 13 13 O 1.21282 * 120.00036 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00600 * 180.02562 * 12 11 9 15 15 C 1.52994 * 109.47425 * 179.97438 * 14 12 11 16 16 O 1.42903 * 109.47325 * 180.02562 * 15 14 12 17 17 C 1.35903 * 117.00471 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.04875 * 359.72277 * 17 16 15 19 19 C 1.38152 * 119.93679 * 179.74312 * 18 17 16 20 20 C 1.38268 * 120.05505 * 0.51106 * 19 18 17 21 21 C 1.50701 * 119.93900 * 179.74604 * 20 19 18 22 22 O 1.42905 * 109.46681 * 245.01928 * 21 20 19 23 23 Si 1.86295 * 109.47603 * 5.01955 * 21 20 19 24 24 C 1.38265 * 120.11270 * 359.76694 * 20 19 18 25 25 C 1.38145 * 120.05788 * 359.97438 * 24 20 19 26 26 C 1.53778 * 113.61526 * 272.49838 * 6 5 3 27 27 H 1.08999 * 109.47133 * 60.00213 * 1 2 3 28 28 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47375 * 300.00230 * 1 2 3 30 30 H 1.09008 * 109.47032 * 59.99670 * 5 3 2 31 31 H 1.09000 * 109.47211 * 299.99648 * 5 3 2 32 32 H 1.08998 * 113.61879 * 25.43831 * 8 6 5 33 33 H 1.08997 * 113.69304 * 254.53918 * 8 6 5 34 34 H 0.97002 * 120.00490 * 335.00104 * 11 9 8 35 35 H 1.09005 * 109.46821 * 300.00153 * 14 12 11 36 36 H 1.09008 * 109.47008 * 59.99541 * 14 12 11 37 37 H 1.08998 * 109.47410 * 299.99589 * 15 14 12 38 38 H 1.08997 * 109.47537 * 60.00290 * 15 14 12 39 39 H 1.07992 * 120.03219 * 0.02562 * 18 17 16 40 40 H 1.07994 * 119.96961 * 180.23519 * 19 18 17 41 41 H 1.09003 * 109.47054 * 125.02217 * 21 20 19 42 42 H 0.96699 * 113.99964 * 60.00225 * 22 21 20 43 43 H 1.48501 * 110.00105 * 58.68194 * 23 21 20 44 44 H 1.48491 * 110.00123 * 180.02562 * 23 21 20 45 45 H 1.07997 * 119.96874 * 179.97438 * 24 20 19 46 46 H 1.07995 * 120.02795 * 179.97438 * 25 24 20 47 47 H 1.08993 * 113.61229 * 105.47191 * 26 6 5 48 48 H 1.09000 * 113.61263 * 334.56841 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4247 3.3539 0.6945 8 6 5.5208 2.9348 0.1232 9 6 5.3818 4.0666 -0.9088 10 1 6.1882 4.0905 -1.6417 11 7 5.1160 5.3770 -0.3103 12 6 5.4582 6.5012 -0.9702 13 8 5.9867 6.4279 -2.0594 14 6 5.1853 7.8493 -0.3544 15 6 5.6673 8.9497 -1.3017 16 8 5.4091 10.2280 -0.7175 17 6 5.7791 11.3209 -1.4357 18 6 6.3836 11.1658 -2.6747 19 6 6.7540 12.2784 -3.4052 20 6 6.5322 13.5453 -2.8977 21 6 6.9425 14.7570 -3.6942 22 8 7.9761 15.4568 -2.9984 23 14 7.5715 14.2194 -5.3633 24 6 5.9351 13.7023 -1.6606 25 6 5.5581 12.5931 -0.9285 26 6 4.1165 3.3493 -1.4082 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 6.0994 2.0842 -0.2370 33 1 5.8404 3.2780 1.1071 34 1 4.6936 5.4357 0.5610 35 1 4.1146 7.9602 -0.1828 36 1 5.7156 7.9292 0.5946 37 1 6.7381 8.8386 -1.4728 38 1 5.1375 8.8700 -2.2509 39 1 6.5604 10.1764 -3.0698 40 1 7.2212 12.1584 -4.3714 41 1 6.0828 15.4144 -3.8245 42 1 8.7737 14.9314 -2.8471 43 1 6.5164 13.4629 -6.0842 44 1 7.9799 15.4052 -6.1583 45 1 5.7634 14.6929 -1.2662 46 1 5.0921 12.7162 0.0379 47 1 3.3010 4.0272 -1.6600 48 1 4.3111 2.6119 -2.1870 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16627170_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:09:53 Heat of formation + Delta-G solvation = -140.843171 kcal Electronic energy + Delta-G solvation = -29237.424527 eV Core-core repulsion = 24839.314343 eV Total energy + Delta-G solvation = -4398.110184 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81566 -41.34085 -40.99083 -39.63490 -39.00638 -37.44009 -37.12403 -34.75570 -33.37727 -32.05464 -31.65964 -31.20227 -28.52574 -26.87040 -26.67486 -25.76153 -24.53979 -23.44969 -22.21001 -21.90644 -21.61924 -20.33987 -19.50868 -18.59242 -18.33802 -17.92148 -17.61925 -17.49267 -17.47354 -17.19479 -16.83984 -16.42117 -16.06556 -15.88974 -15.81284 -15.48739 -15.35406 -14.89088 -14.69349 -14.62907 -14.39636 -14.19187 -14.14706 -14.10566 -13.65175 -13.51481 -13.48551 -13.04925 -12.96156 -12.84994 -12.78603 -12.24773 -12.06625 -12.00017 -11.81842 -11.77586 -11.75674 -11.64899 -11.41304 -11.38175 -11.02048 -10.36989 -10.16910 -9.98161 -9.14444 -4.99882 0.35101 0.37216 1.19363 1.34544 1.48517 1.65412 1.67502 1.69489 2.01311 2.42895 2.72493 3.28045 3.31468 3.48629 3.53299 3.59124 3.66507 3.73735 3.80457 3.83260 3.85560 3.86967 4.00042 4.13254 4.19251 4.22805 4.26811 4.27754 4.32488 4.37127 4.41134 4.54253 4.54729 4.56616 4.58503 4.60200 4.63591 4.71727 4.77135 4.92051 4.95830 5.00976 5.05435 5.23547 5.34358 5.38954 5.47039 5.55338 5.76544 6.31323 6.39706 6.62483 6.72475 7.07001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.505 6.505 5 C -0.106 4.106 6 C -0.103 4.103 7 H 0.102 0.898 8 C -0.139 4.139 9 C 0.119 3.881 10 H 0.107 0.893 11 N -0.711 5.711 12 C 0.524 3.476 13 O -0.536 6.536 14 C -0.142 4.142 15 C 0.074 3.926 16 O -0.316 6.316 17 C 0.138 3.862 18 C -0.203 4.203 19 C -0.074 4.074 20 C -0.159 4.159 21 C -0.062 4.062 22 O -0.541 6.541 23 Si 0.683 3.317 24 C -0.053 4.053 25 C -0.151 4.151 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.404 0.596 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.379 0.621 43 H -0.258 1.258 44 H -0.255 1.255 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.075 0.925 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -5.877 3.264 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.393 6.393 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.120 0.880 8 C -0.177 4.177 9 C 0.014 3.986 10 H 0.125 0.875 11 N -0.362 5.362 12 C 0.310 3.690 13 O -0.413 6.413 14 C -0.182 4.182 15 C -0.002 4.002 16 O -0.230 6.230 17 C 0.092 3.908 18 C -0.221 4.221 19 C -0.092 4.092 20 C -0.160 4.160 21 C -0.173 4.173 22 O -0.347 6.347 23 Si 0.585 3.415 24 C -0.071 4.071 25 C -0.169 4.169 26 C -0.185 4.185 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.226 0.774 43 H -0.183 1.183 44 H -0.180 1.180 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.094 0.906 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.959 -5.128 1.762 5.506 hybrid contribution -1.055 -0.049 0.687 1.260 sum -0.096 -5.177 2.449 5.728 Atomic orbital electron populations 1.23299 0.75940 1.03961 1.02675 1.86508 1.23792 1.33549 1.84034 1.23846 0.92332 0.81375 0.72294 1.90687 1.67282 1.36333 1.44968 1.21455 0.87535 0.99114 1.06194 1.22534 0.96318 0.94048 0.99221 0.87959 1.23402 0.95627 0.98611 1.00086 1.21813 0.98690 0.81550 0.96548 0.87479 1.45618 1.62891 1.05044 1.22686 1.20289 0.77694 0.85675 0.85303 1.90752 1.42428 1.87527 1.20568 1.21471 1.05157 0.90667 1.00888 1.22425 1.01733 0.79784 0.96218 1.85977 1.78359 1.13164 1.45491 1.18991 0.94295 0.86948 0.90535 1.21275 1.05216 1.00150 0.95486 1.20785 0.98036 0.91631 0.98739 1.20230 1.03913 0.94626 0.97189 1.24956 0.93618 0.94197 1.04549 1.86498 1.26999 1.41727 1.79453 0.94805 0.88225 0.82986 0.75476 1.20829 0.94860 0.98380 0.93055 1.20504 1.05218 0.89334 1.01876 1.23521 0.98505 1.00121 0.96391 0.91783 0.87895 0.91792 0.87256 0.87218 0.88074 0.90256 0.76106 0.87403 0.87357 0.90769 0.90889 0.84754 0.85378 0.87064 0.77413 1.18318 1.17971 0.84957 0.84874 0.90585 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.28 10.56 -39.25 -0.41 -0.69 16 3 C 0.46 0.35 7.96 36.00 0.29 0.63 16 4 O -0.51 -1.86 15.51 -18.75 -0.29 -2.15 16 5 C -0.11 0.30 5.65 -27.88 -0.16 0.14 16 6 C -0.10 0.27 3.03 -89.81 -0.27 -0.01 16 7 H 0.10 -0.17 7.68 -51.93 -0.40 -0.57 16 8 C -0.14 0.53 7.39 -25.92 -0.19 0.34 16 9 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 10 H 0.11 -0.01 7.47 -51.93 -0.39 -0.40 16 11 N -0.71 1.33 5.26 -53.02 -0.28 1.05 16 12 C 0.52 0.11 7.83 -10.99 -0.09 0.03 16 13 O -0.54 -2.19 15.58 5.56 0.09 -2.10 16 14 C -0.14 0.25 6.07 -27.89 -0.17 0.09 16 15 C 0.07 0.01 4.03 37.15 0.15 0.16 16 16 O -0.32 -0.53 10.14 -19.43 -0.20 -0.73 16 17 C 0.14 0.28 6.69 -39.22 -0.26 0.02 16 18 C -0.20 -0.26 9.04 -39.43 -0.36 -0.62 16 19 C -0.07 -0.05 8.66 -39.60 -0.34 -0.39 16 20 C -0.16 -0.16 5.35 -104.60 -0.56 -0.72 16 21 C -0.06 -0.03 2.80 36.01 0.10 0.07 16 22 O -0.54 -0.48 12.83 -35.23 -0.45 -0.93 16 23 Si 0.68 -0.16 29.80 -169.99 -5.07 -5.23 16 24 C -0.05 -0.07 9.68 -39.61 -0.38 -0.45 16 25 C -0.15 -0.24 9.99 -39.43 -0.39 -0.64 16 26 C -0.15 0.20 7.43 -25.92 -0.19 0.01 16 27 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 28 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 30 H 0.11 -0.45 7.84 -51.92 -0.41 -0.86 16 31 H 0.11 -0.49 8.14 -51.93 -0.42 -0.91 16 32 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 33 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 34 H 0.40 -1.69 8.70 -40.82 -0.36 -2.04 16 35 H 0.11 -0.31 8.14 -51.93 -0.42 -0.74 16 36 H 0.11 -0.37 8.14 -51.92 -0.42 -0.79 16 37 H 0.07 0.02 7.61 -51.93 -0.40 -0.37 16 38 H 0.07 0.05 7.63 -51.93 -0.40 -0.34 16 39 H 0.13 0.02 6.30 -52.49 -0.33 -0.31 16 40 H 0.13 -0.16 4.90 -52.49 -0.26 -0.42 16 41 H 0.11 0.10 7.96 -51.93 -0.41 -0.32 16 42 H 0.38 -1.10 8.70 45.56 0.40 -0.70 16 43 H -0.26 -0.58 7.11 56.52 0.40 -0.18 16 44 H -0.25 -0.74 7.11 56.52 0.40 -0.34 16 45 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 46 H 0.13 0.06 8.06 -52.49 -0.42 -0.37 16 47 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.09 -0.19 7.89 -51.93 -0.41 -0.60 16 LS Contribution 402.37 15.07 6.06 6.06 Total: 0.00 -10.08 402.37 -9.80 -19.88 By element: Atomic # 1 Polarization: -7.16 SS G_CDS: -7.20 Total: -14.36 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.05 Total: -0.80 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -0.28 Total: 1.05 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -1.27 Total: -6.61 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: -5.07 Total: -5.23 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -10.08 -9.80 -19.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.961 kcal (2) G-P(sol) polarization free energy of solvation -10.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds