Wall clock time and date at job start Sun Mar 7 2021 08:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00317 * 2 1 4 4 O 1.20832 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00522 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47423 * 179.97438 * 5 3 2 7 7 H 1.08999 * 112.84834 * 43.80646 * 6 5 3 8 8 C 1.53778 * 113.61263 * 174.99752 * 6 5 3 9 9 C 1.53787 * 87.08035 * 139.98349 * 8 6 5 10 10 H 1.08994 * 113.61447 * 220.02014 * 9 8 6 11 11 N 1.46496 * 113.61210 * 89.11438 * 9 8 6 12 12 C 1.34774 * 120.00099 * 155.00440 * 11 9 8 13 13 O 1.21282 * 120.00036 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00600 * 180.02562 * 12 11 9 15 15 C 1.52994 * 109.47425 * 179.97438 * 14 12 11 16 16 O 1.42903 * 109.47325 * 180.02562 * 15 14 12 17 17 C 1.35903 * 117.00471 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.04875 * 359.72277 * 17 16 15 19 19 C 1.38152 * 119.93679 * 179.74312 * 18 17 16 20 20 C 1.38268 * 120.05505 * 0.51106 * 19 18 17 21 21 C 1.50701 * 119.93900 * 179.74604 * 20 19 18 22 22 O 1.42905 * 109.46681 * 245.01928 * 21 20 19 23 23 Si 1.86295 * 109.47603 * 5.01955 * 21 20 19 24 24 C 1.38265 * 120.11270 * 359.76694 * 20 19 18 25 25 C 1.38145 * 120.05788 * 359.97438 * 24 20 19 26 26 C 1.53778 * 113.61526 * 272.49838 * 6 5 3 27 27 H 1.08999 * 109.47133 * 60.00213 * 1 2 3 28 28 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47375 * 300.00230 * 1 2 3 30 30 H 1.09008 * 109.47032 * 59.99670 * 5 3 2 31 31 H 1.09000 * 109.47211 * 299.99648 * 5 3 2 32 32 H 1.08998 * 113.61879 * 25.43831 * 8 6 5 33 33 H 1.08997 * 113.69304 * 254.53918 * 8 6 5 34 34 H 0.97002 * 120.00490 * 335.00104 * 11 9 8 35 35 H 1.09005 * 109.46821 * 300.00153 * 14 12 11 36 36 H 1.09008 * 109.47008 * 59.99541 * 14 12 11 37 37 H 1.08998 * 109.47410 * 299.99589 * 15 14 12 38 38 H 1.08997 * 109.47537 * 60.00290 * 15 14 12 39 39 H 1.07992 * 120.03219 * 0.02562 * 18 17 16 40 40 H 1.07994 * 119.96961 * 180.23519 * 19 18 17 41 41 H 1.09003 * 109.47054 * 125.02217 * 21 20 19 42 42 H 0.96699 * 113.99964 * 60.00225 * 22 21 20 43 43 H 1.48501 * 110.00105 * 58.68194 * 23 21 20 44 44 H 1.48491 * 110.00123 * 180.02562 * 23 21 20 45 45 H 1.07997 * 119.96874 * 179.97438 * 24 20 19 46 46 H 1.07995 * 120.02795 * 179.97438 * 25 24 20 47 47 H 1.08993 * 113.61229 * 105.47191 * 26 6 5 48 48 H 1.09000 * 113.61263 * 334.56841 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4247 3.3539 0.6945 8 6 5.5208 2.9348 0.1232 9 6 5.3818 4.0666 -0.9088 10 1 6.1882 4.0905 -1.6417 11 7 5.1160 5.3770 -0.3103 12 6 5.4582 6.5012 -0.9702 13 8 5.9867 6.4279 -2.0594 14 6 5.1853 7.8493 -0.3544 15 6 5.6673 8.9497 -1.3017 16 8 5.4091 10.2280 -0.7175 17 6 5.7791 11.3209 -1.4357 18 6 6.3836 11.1658 -2.6747 19 6 6.7540 12.2784 -3.4052 20 6 6.5322 13.5453 -2.8977 21 6 6.9425 14.7570 -3.6942 22 8 7.9761 15.4568 -2.9984 23 14 7.5715 14.2194 -5.3633 24 6 5.9351 13.7023 -1.6606 25 6 5.5581 12.5931 -0.9285 26 6 4.1165 3.3493 -1.4082 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 6.0994 2.0842 -0.2370 33 1 5.8404 3.2780 1.1071 34 1 4.6936 5.4357 0.5610 35 1 4.1146 7.9602 -0.1828 36 1 5.7156 7.9292 0.5946 37 1 6.7381 8.8386 -1.4728 38 1 5.1375 8.8700 -2.2509 39 1 6.5604 10.1764 -3.0698 40 1 7.2212 12.1584 -4.3714 41 1 6.0828 15.4144 -3.8245 42 1 8.7737 14.9314 -2.8471 43 1 6.5164 13.4629 -6.0842 44 1 7.9799 15.4052 -6.1583 45 1 5.7634 14.6929 -1.2662 46 1 5.0921 12.7162 0.0379 47 1 3.3010 4.0272 -1.6600 48 1 4.3111 2.6119 -2.1870 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:09:52 Heat of formation + Delta-G solvation = -140.760401 kcal Electronic energy + Delta-G solvation = -29237.420938 eV Core-core repulsion = 24839.314343 eV Total energy + Delta-G solvation = -4398.106595 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.78220 -41.39281 -41.00791 -39.59992 -39.05284 -37.50364 -37.17324 -34.73251 -33.35509 -32.09284 -31.64020 -31.17419 -28.44643 -26.70832 -26.67277 -25.77429 -24.47327 -23.48009 -22.26613 -21.87083 -21.58287 -20.20140 -19.55349 -18.60001 -18.36397 -17.92687 -17.61497 -17.49440 -17.46438 -17.16802 -16.84460 -16.47356 -16.08970 -15.92036 -15.75695 -15.47480 -15.24208 -14.81072 -14.71877 -14.66406 -14.42613 -14.29757 -14.13663 -14.06112 -13.59536 -13.53337 -13.34380 -12.98428 -12.91217 -12.82760 -12.66193 -12.21932 -12.06054 -12.04701 -11.83906 -11.79679 -11.73003 -11.71839 -11.38203 -11.20593 -11.07930 -10.42147 -10.10717 -10.05743 -9.23229 -5.01894 0.26801 0.29013 1.17755 1.31424 1.48677 1.61897 1.68726 1.78950 1.94314 2.47103 2.64452 3.45941 3.50095 3.53383 3.56280 3.70927 3.77349 3.82410 3.83504 3.87708 3.91511 3.92665 4.01092 4.24660 4.25122 4.27045 4.32656 4.41430 4.43093 4.49214 4.51423 4.61281 4.64148 4.66826 4.68237 4.75899 4.77985 4.82647 4.89644 4.96272 5.05010 5.11956 5.16433 5.22453 5.27273 5.42044 5.48092 5.60534 5.70585 6.30559 6.44102 6.71154 6.78001 7.13469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.543 6.543 5 C -0.101 4.101 6 C -0.097 4.097 7 H 0.092 0.908 8 C -0.119 4.119 9 C 0.111 3.889 10 H 0.090 0.910 11 N -0.700 5.700 12 C 0.522 3.478 13 O -0.581 6.581 14 C -0.134 4.134 15 C 0.073 3.927 16 O -0.322 6.322 17 C 0.122 3.878 18 C -0.209 4.209 19 C -0.078 4.078 20 C -0.162 4.162 21 C -0.066 4.066 22 O -0.556 6.556 23 Si 0.769 3.231 24 C -0.060 4.060 25 C -0.159 4.159 26 C -0.151 4.151 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.417 0.583 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.107 0.893 42 H 0.395 0.605 43 H -0.290 1.290 44 H -0.297 1.297 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.049 0.951 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -6.989 4.347 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.433 6.433 5 C -0.138 4.138 6 C -0.116 4.116 7 H 0.110 0.890 8 C -0.157 4.157 9 C 0.005 3.995 10 H 0.108 0.892 11 N -0.352 5.352 12 C 0.309 3.691 13 O -0.461 6.461 14 C -0.173 4.173 15 C -0.002 4.002 16 O -0.236 6.236 17 C 0.077 3.923 18 C -0.228 4.228 19 C -0.095 4.095 20 C -0.163 4.163 21 C -0.176 4.176 22 O -0.364 6.364 23 Si 0.675 3.325 24 C -0.078 4.078 25 C -0.178 4.178 26 C -0.190 4.190 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.254 0.746 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.245 0.755 43 H -0.217 1.217 44 H -0.225 1.225 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.068 0.932 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.704 -6.277 2.907 7.124 hybrid contribution -1.337 0.296 0.321 1.407 sum 0.367 -5.981 3.228 6.806 Atomic orbital electron populations 1.23463 0.75376 1.05420 1.02221 1.86514 1.24558 1.33655 1.83810 1.24605 0.93658 0.80787 0.70999 1.90671 1.68344 1.37408 1.46849 1.21599 0.84926 0.99144 1.08156 1.22446 0.97204 0.94127 0.97811 0.88972 1.23339 0.94604 0.97855 0.99891 1.21883 0.97998 0.82223 0.97394 0.89169 1.45575 1.62015 1.04664 1.22942 1.20625 0.76977 0.86704 0.84756 1.90731 1.44696 1.88157 1.22532 1.21440 1.06209 0.88709 1.00954 1.22450 1.01515 0.79813 0.96435 1.85958 1.78458 1.13464 1.45700 1.19194 0.94818 0.87264 0.91016 1.21432 1.05162 1.00748 0.95447 1.20994 0.97841 0.91326 0.99363 1.20332 1.03848 0.94907 0.97206 1.25046 0.93664 0.93895 1.05006 1.86460 1.27852 1.42571 1.79483 0.93805 0.85829 0.79919 0.72906 1.20980 0.94904 0.98660 0.93270 1.20666 1.05393 0.89344 1.02360 1.23554 0.97698 1.00092 0.97624 0.92404 0.85520 0.92140 0.85428 0.84790 0.86353 0.89033 0.74611 0.86031 0.85237 0.91109 0.91890 0.84129 0.83656 0.87600 0.75535 1.21732 1.22526 0.84302 0.84107 0.93207 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.52 10.56 -51.39 -0.54 -1.06 16 3 C 0.45 0.73 7.96 71.23 0.57 1.30 16 4 O -0.54 -4.59 15.51 21.95 0.34 -4.25 16 5 C -0.10 0.69 5.65 29.85 0.17 0.86 16 6 C -0.10 0.56 3.03 -10.27 -0.03 0.53 16 7 H 0.09 -0.31 7.68 -2.39 -0.02 -0.32 16 8 C -0.12 1.08 7.39 31.12 0.23 1.31 16 9 C 0.11 -0.33 4.32 45.52 0.20 -0.14 16 10 H 0.09 0.07 7.47 -2.39 -0.02 0.05 16 11 N -0.70 2.47 5.26 -440.04 -2.32 0.15 16 12 C 0.52 0.60 7.83 87.66 0.69 1.29 16 13 O -0.58 -5.69 15.58 -3.04 -0.05 -5.74 16 14 C -0.13 0.48 6.07 29.85 0.18 0.66 16 15 C 0.07 0.09 4.03 71.98 0.29 0.38 16 16 O -0.32 -1.26 10.14 -92.46 -0.94 -2.19 16 17 C 0.12 0.58 6.69 22.51 0.15 0.73 16 18 C -0.21 -0.66 9.04 22.37 0.20 -0.46 16 19 C -0.08 -0.11 8.66 22.26 0.19 0.08 16 20 C -0.16 -0.35 5.35 -19.85 -0.11 -0.46 16 21 C -0.07 -0.07 2.80 71.24 0.20 0.13 16 22 O -0.56 -0.82 12.83 -148.98 -1.91 -2.73 16 23 Si 0.77 -0.25 29.80 68.60 2.04 1.79 16 24 C -0.06 -0.18 9.68 22.25 0.22 0.04 16 25 C -0.16 -0.59 9.99 22.37 0.22 -0.37 16 26 C -0.15 0.31 7.43 31.12 0.23 0.54 16 27 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 28 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 30 H 0.13 -1.30 7.84 -2.38 -0.02 -1.32 16 31 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 32 H 0.12 -1.42 8.10 -2.39 -0.02 -1.44 16 33 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.42 -3.66 8.70 -92.71 -0.81 -4.46 16 35 H 0.12 -0.75 8.14 -2.38 -0.02 -0.77 16 36 H 0.13 -1.00 8.14 -2.38 -0.02 -1.02 16 37 H 0.07 0.12 7.61 -2.39 -0.02 0.10 16 38 H 0.06 0.19 7.63 -2.39 -0.02 0.17 16 39 H 0.14 0.18 6.30 -2.91 -0.02 0.16 16 40 H 0.15 -0.42 4.90 -2.91 -0.01 -0.44 16 41 H 0.11 0.22 7.96 -2.39 -0.02 0.20 16 42 H 0.39 -2.54 8.70 -74.06 -0.64 -3.19 16 43 H -0.29 -1.45 7.11 99.48 0.71 -0.74 16 44 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 45 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 46 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 47 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.10 -0.38 7.89 -2.39 -0.02 -0.39 16 Total: 0.00 -25.33 402.37 1.00 -24.33 By element: Atomic # 1 Polarization: -17.45 SS G_CDS: -0.42 Total: -17.87 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 4.79 Total: 7.57 kcal Atomic # 7 Polarization: 2.47 SS G_CDS: -2.32 Total: 0.15 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -3.10 Total: -15.98 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: 2.04 Total: 1.79 kcal Total: -25.33 1.00 -24.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.431 kcal (2) G-P(sol) polarization free energy of solvation -25.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds