Wall clock time and date at job start Sun Mar 7 2021 08:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99768 * 2 1 4 4 O 1.20829 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00273 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47412 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.85043 * 314.66553 * 6 5 3 8 8 C 1.53785 * 113.69093 * 85.93670 * 6 5 3 9 9 C 1.53779 * 87.08093 * 139.99088 * 8 6 5 10 10 H 1.08994 * 113.61314 * 220.01752 * 9 8 6 11 11 N 1.46504 * 113.61484 * 89.11287 * 9 8 6 12 12 C 1.34781 * 119.99665 * 107.49929 * 11 9 8 13 13 O 1.21280 * 119.99730 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99783 * 179.97438 * 12 11 9 15 15 O 1.42897 * 109.46960 * 180.02562 * 14 12 11 16 16 C 1.36000 * 116.99966 * 180.02562 * 15 14 12 17 17 C 1.39159 * 120.07430 * 180.02562 * 16 15 14 18 18 O 1.35993 * 120.07070 * 359.94744 * 17 16 15 19 19 C 1.42899 * 116.99956 * 179.97438 * 18 17 16 20 20 C 1.38557 * 119.85371 * 179.97438 * 17 16 15 21 21 C 1.38243 * 120.00272 * 0.02562 * 20 17 16 22 22 C 1.50699 * 119.92825 * 180.02562 * 21 20 17 23 23 O 1.42894 * 109.46907 * 254.99231 * 22 21 20 24 24 Si 1.86291 * 109.47323 * 14.99562 * 22 21 20 25 25 C 1.38256 * 120.14592 * 0.02562 * 21 20 17 26 26 N 1.48008 * 119.92855 * 179.97438 * 25 21 20 27 27 O 1.21796 * 119.99896 * 180.02562 * 26 25 21 28 28 O 1.21799 * 119.99859 * 0.02562 * 26 25 21 29 29 C 1.38248 * 120.14321 * 359.71215 * 25 21 20 30 30 C 1.53781 * 113.61293 * 183.47294 * 6 5 3 31 31 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47450 * 299.99814 * 1 2 3 33 33 H 1.09007 * 109.46745 * 59.99961 * 1 2 3 34 34 H 1.09005 * 109.46730 * 59.99835 * 5 3 2 35 35 H 1.09004 * 109.46839 * 300.00696 * 5 3 2 36 36 H 1.09003 * 113.60734 * 254.54208 * 8 6 5 37 37 H 1.08996 * 113.61146 * 25.43706 * 8 6 5 38 38 H 0.96996 * 119.99953 * 287.50554 * 11 9 8 39 39 H 1.09003 * 109.47145 * 300.00264 * 14 12 11 40 40 H 1.09007 * 109.47317 * 60.00401 * 14 12 11 41 41 H 1.09006 * 109.46585 * 60.00305 * 19 18 17 42 42 H 1.08993 * 109.47118 * 180.02562 * 19 18 17 43 43 H 1.08999 * 109.47482 * 300.00942 * 19 18 17 44 44 H 1.07999 * 119.99904 * 180.02562 * 20 17 16 45 45 H 1.09003 * 109.47083 * 134.99886 * 22 21 20 46 46 H 0.96701 * 114.00247 * 179.97438 * 23 22 21 47 47 H 1.48499 * 110.00113 * 178.68185 * 24 22 21 48 48 H 1.48501 * 110.00047 * 300.00255 * 24 22 21 49 49 H 1.08005 * 119.99878 * 180.29576 * 29 25 21 50 50 H 1.09005 * 113.61302 * 334.47929 * 30 6 5 51 51 H 1.08996 * 113.61527 * 105.30092 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 1 3.4432 3.3485 -0.7134 8 6 4.0790 3.3627 1.4060 9 6 5.3571 4.0755 0.9336 10 1 6.1437 4.1066 1.6875 11 7 5.1073 5.3803 0.3159 12 6 5.4319 6.5107 0.9743 13 8 5.9312 6.4477 2.0777 14 6 5.1755 7.8528 0.3387 15 8 5.6020 8.8890 1.2254 16 6 5.4392 10.1707 0.8009 17 6 5.8330 11.2297 1.6132 18 8 6.3806 10.9853 2.8338 19 6 6.7619 12.1208 3.6130 20 6 5.6656 12.5338 1.1759 21 6 5.1078 12.7806 -0.0647 22 6 4.9270 14.1996 -0.5389 23 8 3.5471 14.5597 -0.4485 24 14 5.9387 15.3443 0.5271 25 6 4.7155 11.7285 -0.8713 26 7 4.1183 11.9983 -2.1985 27 8 3.7719 11.0725 -2.9099 28 8 3.9734 13.1462 -2.5790 29 6 4.8848 10.4249 -0.4433 30 6 5.5235 2.9342 -0.0836 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 3.9564 0.7807 -0.8892 35 1 3.9557 0.7810 0.8908 36 1 3.2570 4.0427 1.6297 37 1 4.2528 2.6327 2.1965 38 1 4.7082 5.4306 -0.5667 39 1 5.7308 7.9240 -0.5966 40 1 4.1097 7.9620 0.1377 41 1 5.8861 12.7411 3.8038 42 1 7.1839 11.7861 4.5605 43 1 7.5067 12.7014 3.0688 44 1 5.9708 13.3574 1.8043 45 1 5.2567 14.2813 -1.5746 46 1 3.3565 15.4625 -0.7379 47 1 5.7940 16.7431 0.0500 48 1 5.4989 15.2422 1.9418 49 1 4.5819 9.6047 -1.0774 50 1 6.0923 2.0871 0.2998 51 1 5.8678 3.2669 -1.0628 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:10:22 Heat of formation + Delta-G solvation = -152.197189 kcal Electronic energy + Delta-G solvation = -39232.070037 eV Core-core repulsion = 33683.768878 eV Total energy + Delta-G solvation = -5548.301159 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.159 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.41979 -42.15269 -41.74990 -41.16241 -40.08040 -39.28939 -38.99522 -37.78591 -37.49364 -37.25479 -34.82104 -32.80044 -32.61376 -31.71290 -29.79385 -28.83112 -28.32392 -27.93327 -26.68489 -25.85500 -24.70956 -23.86607 -23.12897 -22.09556 -21.88508 -20.78071 -20.22140 -19.88955 -19.47653 -18.93277 -18.73524 -18.56467 -18.37466 -18.04544 -17.83202 -17.76716 -17.59252 -17.46939 -16.91216 -16.85445 -16.48540 -15.99849 -15.76653 -15.74095 -15.47824 -15.14806 -14.98750 -14.75625 -14.70581 -14.27624 -14.13821 -14.07204 -13.90444 -13.58493 -13.51698 -13.34701 -12.97956 -12.93819 -12.72253 -12.70002 -12.58974 -12.42498 -12.39402 -12.33755 -12.20289 -12.06115 -11.92201 -11.83780 -11.73735 -11.38748 -11.21523 -11.11733 -10.50077 -10.42360 -10.18513 -9.51725 -5.02054 -1.35330 -0.45802 0.16192 0.28815 1.12949 1.18387 1.20981 1.34848 1.51460 1.79265 1.81954 1.85675 1.88751 2.31607 2.88624 3.13156 3.27292 3.43043 3.44892 3.47811 3.50979 3.60003 3.77226 3.82260 3.84101 3.90895 3.92708 3.95500 4.01813 4.11474 4.17380 4.25136 4.27034 4.29131 4.36059 4.41847 4.50331 4.59293 4.61054 4.68209 4.69331 4.73951 4.75527 4.81469 4.87926 5.04242 5.10705 5.18615 5.25296 5.41858 5.51074 5.59850 6.01503 6.35744 6.49282 6.50939 6.71650 7.04440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.543 6.543 5 C -0.101 4.101 6 C -0.097 4.097 7 H 0.094 0.906 8 C -0.151 4.151 9 C 0.112 3.888 10 H 0.090 0.910 11 N -0.694 5.694 12 C 0.519 3.481 13 O -0.565 6.565 14 C 0.026 3.974 15 O -0.290 6.290 16 C 0.101 3.899 17 C 0.168 3.832 18 O -0.306 6.306 19 C 0.000 4.000 20 C -0.173 4.173 21 C 0.004 3.996 22 C -0.106 4.106 23 O -0.547 6.547 24 Si 0.770 3.230 25 C -0.045 4.045 26 N 0.038 4.962 27 O -0.193 6.193 28 O -0.154 6.154 29 C -0.110 4.110 30 C -0.117 4.117 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.419 0.581 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.184 0.816 45 H 0.102 0.898 46 H 0.400 0.600 47 H -0.276 1.276 48 H -0.269 1.269 49 H 0.185 0.815 50 H 0.120 0.880 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -2.808 -0.554 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.433 6.433 5 C -0.138 4.138 6 C -0.116 4.116 7 H 0.112 0.888 8 C -0.190 4.190 9 C 0.006 3.994 10 H 0.108 0.892 11 N -0.348 5.348 12 C 0.305 3.695 13 O -0.442 6.442 14 C -0.051 4.051 15 O -0.202 6.202 16 C 0.054 3.946 17 C 0.120 3.880 18 O -0.217 6.217 19 C -0.094 4.094 20 C -0.191 4.191 21 C 0.002 3.998 22 C -0.213 4.213 23 O -0.358 6.358 24 Si 0.671 3.329 25 C -0.129 4.129 26 N 0.552 4.448 27 O -0.401 6.401 28 O -0.372 6.372 29 C -0.129 4.129 30 C -0.155 4.155 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.257 0.743 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.143 0.857 43 H 0.109 0.891 44 H 0.200 0.800 45 H 0.120 0.880 46 H 0.252 0.748 47 H -0.202 1.202 48 H -0.196 1.196 49 H 0.202 0.798 50 H 0.138 0.862 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.905 -2.937 1.887 6.860 hybrid contribution -2.336 0.865 -1.286 2.804 sum 3.568 -2.072 0.601 4.170 Atomic orbital electron populations 1.23461 0.75404 1.05408 1.02200 1.86515 1.24530 1.33676 1.83822 1.24619 0.93676 0.80781 0.71011 1.90673 1.68348 1.37410 1.46824 1.21595 0.84887 0.99124 1.08199 1.22458 0.97218 0.94129 0.97770 0.88799 1.23561 0.97527 1.00050 0.97877 1.21910 0.98115 0.81873 0.97453 0.89203 1.45390 1.63443 1.04218 1.21705 1.20289 0.77685 0.86139 0.85409 1.90774 1.44209 1.87716 1.21528 1.22914 1.04164 0.84002 0.94063 1.86298 1.79327 1.10965 1.43632 1.17930 1.00675 0.84150 0.91821 1.18631 0.92356 0.90995 0.86044 1.86319 1.73610 1.36917 1.24882 1.23744 1.01547 0.87694 0.96389 1.21164 1.05630 0.96017 0.96314 1.19121 0.94041 0.94368 0.92284 1.25422 0.90100 0.96514 1.09263 1.86479 1.22744 1.37579 1.88957 0.94349 0.86558 0.76173 0.75801 1.20545 1.10739 0.95649 0.86004 1.43553 0.98320 1.00310 1.02606 1.94518 1.53817 1.37803 1.53946 1.94477 1.58107 1.06796 1.77799 1.20902 0.99948 0.96591 0.95483 1.23343 0.94595 0.97512 1.00015 0.85523 0.92432 0.92160 0.84717 0.85422 0.93184 0.88189 0.74284 0.84886 0.85962 0.91210 0.85653 0.89107 0.79960 0.88001 0.74819 1.20235 1.19588 0.79778 0.86219 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.64 10.57 -51.41 -0.54 -1.18 16 3 C 0.45 0.85 7.96 71.24 0.57 1.42 16 4 O -0.54 -4.76 15.54 21.95 0.34 -4.42 16 5 C -0.10 0.68 5.64 29.85 0.17 0.85 16 6 C -0.10 0.56 2.99 -10.27 -0.03 0.53 16 7 H 0.09 -0.34 7.73 -2.39 -0.02 -0.36 16 8 C -0.15 0.24 7.43 31.12 0.23 0.48 16 9 C 0.11 -0.29 4.32 45.52 0.20 -0.09 16 10 H 0.09 0.15 7.47 -2.39 -0.02 0.13 16 11 N -0.69 2.22 5.26 -440.03 -2.32 -0.09 16 12 C 0.52 1.66 7.91 87.66 0.69 2.36 16 13 O -0.56 -7.96 16.10 16.01 0.26 -7.70 16 14 C 0.03 -0.06 5.22 71.23 0.37 0.31 16 15 O -0.29 -1.59 9.45 -67.13 -0.63 -2.22 16 16 C 0.10 0.33 6.70 22.57 0.15 0.48 16 17 C 0.17 0.41 6.70 22.57 0.15 0.57 16 18 O -0.31 -0.92 10.28 -79.60 -0.82 -1.74 16 19 C 0.00 0.00 9.81 113.37 1.11 1.11 16 20 C -0.17 0.10 7.64 22.35 0.17 0.27 16 21 C 0.00 0.01 5.29 -19.86 -0.11 -0.10 16 22 C -0.11 -0.06 1.73 71.24 0.12 0.06 16 23 O -0.55 -1.99 11.77 -129.62 -1.53 -3.52 16 24 Si 0.77 -3.75 30.19 68.60 2.07 -1.68 16 25 C -0.05 -0.24 6.85 36.38 0.25 0.01 16 26 N 0.04 0.37 4.45 -46.45 -0.21 0.17 16 27 O -0.19 -2.13 18.44 18.89 0.35 -1.78 16 28 O -0.15 -1.69 14.62 25.11 0.37 -1.32 16 29 C -0.11 -0.18 8.54 22.35 0.19 0.02 16 30 C -0.12 1.07 7.39 31.12 0.23 1.30 16 31 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.06 -0.03 8.13 -2.38 -0.02 -0.05 16 34 H 0.13 -1.52 8.14 -2.38 -0.02 -1.54 16 35 H 0.13 -1.29 7.88 -2.39 -0.02 -1.30 16 36 H 0.05 0.19 8.14 -2.39 -0.02 0.18 16 37 H 0.10 -0.32 7.92 -2.39 -0.02 -0.34 16 38 H 0.42 -4.00 8.70 -92.71 -0.81 -4.80 16 39 H 0.13 -1.22 7.66 -2.39 -0.02 -1.23 16 40 H 0.12 -0.86 7.67 -2.38 -0.02 -0.88 16 41 H 0.07 -0.51 7.66 -2.38 -0.02 -0.53 16 42 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H 0.09 -0.98 7.66 -2.39 -0.02 -1.00 16 44 H 0.18 -1.02 3.13 -2.91 -0.01 -1.03 16 45 H 0.10 0.04 6.07 -2.39 -0.01 0.02 16 46 H 0.40 -1.61 8.74 -74.06 -0.65 -2.25 16 47 H -0.28 0.11 7.11 99.48 0.71 0.82 16 48 H -0.27 0.51 6.74 99.48 0.67 1.18 16 49 H 0.19 -0.61 5.85 -2.91 -0.02 -0.63 16 50 H 0.12 -1.44 8.10 -2.38 -0.02 -1.46 16 51 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 Total: 0.00 -35.47 432.43 2.59 -32.88 By element: Atomic # 1 Polarization: -17.71 SS G_CDS: -0.42 Total: -18.13 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.67 Total: 10.74 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -2.52 Total: 0.07 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -2.21 Total: -23.88 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.07 Total: -1.68 kcal Total: -35.47 2.59 -32.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.320 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds