Wall clock time and date at job start Sun Mar 7 2021 08:10:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45205 * 1
3 3 C 1.34229 * 116.99921 * 2 1
4 4 O 1.20827 * 119.99911 * 0.02562 * 3 2 1
5 5 C 1.50699 * 119.99591 * 179.97438 * 3 2 1
6 6 C 1.53003 * 109.46854 * 180.02562 * 5 3 2
7 7 H 1.09008 * 112.84575 * 316.19616 * 6 5 3
8 8 C 1.53776 * 113.61455 * 87.50150 * 6 5 3
9 9 C 1.53787 * 87.08156 * 139.98380 * 8 6 5
10 10 H 1.09001 * 113.68914 * 220.00756 * 9 8 6
11 11 N 1.46492 * 113.61590 * 89.11324 * 9 8 6
12 12 C 1.34786 * 120.00073 * 107.50349 * 11 9 8
13 13 O 1.21284 * 119.99657 * 0.02562 * 12 11 9
14 14 C 1.50698 * 120.00122 * 179.97438 * 12 11 9
15 15 O 1.42902 * 109.46776 * 180.02562 * 14 12 11
16 16 C 1.35902 * 116.99410 * 180.02562 * 15 14 12
17 17 C 1.38720 * 120.04843 * 180.02562 * 16 15 14
18 18 N 1.48002 * 120.03180 * 359.97438 * 17 16 15
19 19 O 1.21799 * 119.99905 * 180.02562 * 18 17 16
20 20 O 1.21796 * 119.99692 * 0.02562 * 18 17 16
21 21 C 1.38168 * 119.93757 * 179.97438 * 17 16 15
22 22 C 1.38237 * 120.05874 * 0.02562 * 21 17 16
23 23 C 1.50697 * 119.94498 * 179.97438 * 22 21 17
24 24 O 1.42899 * 109.47435 * 300.00437 * 23 22 21
25 25 Si 1.86305 * 109.47442 * 180.02562 * 23 22 21
26 26 C 1.38291 * 120.11396 * 359.68307 * 22 21 17
27 27 C 1.38125 * 120.05217 * 0.60010 * 26 22 21
28 28 C 1.53777 * 113.61543 * 184.99967 * 6 5 3
29 29 H 1.09005 * 109.47095 * 59.99920 * 1 2 3
30 30 H 1.08998 * 109.47022 * 179.97438 * 1 2 3
31 31 H 1.08992 * 109.47204 * 300.00327 * 1 2 3
32 32 H 1.09002 * 109.47270 * 60.00598 * 5 3 2
33 33 H 1.09001 * 109.47234 * 300.00096 * 5 3 2
34 34 H 1.08995 * 113.62056 * 25.43138 * 8 6 5
35 35 H 1.09010 * 113.61518 * 254.52580 * 8 6 5
36 36 H 0.97003 * 120.00350 * 287.50680 * 11 9 8
37 37 H 1.08998 * 109.46950 * 60.00535 * 14 12 11
38 38 H 1.08995 * 109.47513 * 300.00356 * 14 12 11
39 39 H 1.08006 * 119.96904 * 180.02562 * 21 17 16
40 40 H 1.08999 * 109.47259 * 60.00667 * 23 22 21
41 41 H 0.96699 * 113.99863 * 299.99688 * 24 23 22
42 42 H 1.48498 * 109.99781 * 58.68131 * 25 23 22
43 43 H 1.48498 * 110.00274 * 180.02562 * 25 23 22
44 44 H 1.08004 * 119.97798 * 180.31914 * 26 22 21
45 45 H 1.08002 * 120.03152 * 179.70250 * 27 26 22
46 46 H 1.09004 * 113.61778 * 105.46896 * 28 6 5
47 47 H 1.09001 * 113.68887 * 334.57747 * 28 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5664 1.2748 0.0006
6 6 4.0002 2.7420 0.0011
7 1 3.4252 3.3536 -0.6943
8 6 4.1154 3.3498 1.4089
9 6 5.3811 4.0669 0.9102
10 1 6.1877 4.0921 1.6430
11 7 5.1158 5.3771 0.3110
12 6 5.4575 6.5016 0.9709
13 8 5.9851 6.4287 2.0605
14 6 5.1851 7.8494 0.3542
15 8 5.6346 8.8776 1.2390
16 6 5.4613 10.1622 0.8306
17 6 5.8751 11.2102 1.6398
18 7 6.5054 10.9306 2.9493
19 8 6.8681 11.8512 3.6595
20 8 6.6614 9.7799 3.3168
21 6 5.6983 12.5152 1.2220
22 6 5.1091 12.7771 -0.0008
23 6 4.9170 14.2015 -0.4536
24 8 4.0890 14.8920 0.4842
25 14 4.1022 14.2161 -2.1290
26 6 4.7012 11.7340 -0.8120
27 6 4.8704 10.4276 -0.3964
28 6 5.5209 2.9348 -0.1211
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8899
32 1 3.9564 0.7806 -0.8892
33 1 3.9557 0.7808 0.8908
34 1 4.3094 2.6129 2.1882
35 1 3.2997 4.0280 1.6599
36 1 4.6941 5.4354 -0.5606
37 1 4.1145 7.9603 0.1818
38 1 5.7160 7.9291 -0.5944
39 1 6.0206 13.3316 1.8515
40 1 5.8860 14.6967 -0.5163
41 1 3.2090 14.5055 0.5911
42 1 2.7942 13.5161 -2.0637
43 1 3.9077 15.6152 -2.5871
44 1 4.2459 11.9410 -1.7692
45 1 4.5473 9.6133 -1.0281
46 1 5.8400 3.2778 -1.1053
47 1 6.1005 2.0849 0.2394
There are 70 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 70
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16627170_4549638.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:10:27
Heat of formation + Delta-G solvation = -127.294884 kcal
Electronic energy + Delta-G solvation = -34319.825107 eV
Core-core repulsion = 29246.823603 eV
Total energy + Delta-G solvation = -5073.001503 eV
No. of doubly occupied orbitals = 70
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 381.144 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.30414 -41.89492 -41.62309 -40.98948 -39.86117 -39.04882 -37.63134 -37.51450
-37.44166 -34.78927 -33.49217 -32.29693 -31.71724 -29.76285 -28.33744 -27.83035
-26.67061 -26.59826 -24.79343 -23.97651 -22.87391 -22.01135 -21.86793 -20.58030
-20.20217 -19.78746 -19.16689 -18.65492 -18.64931 -18.47747 -18.24456 -17.67895
-17.58210 -17.52919 -17.20776 -16.83776 -16.38401 -16.17735 -15.84933 -15.76559
-15.54271 -15.16819 -15.00415 -14.77266 -14.69703 -14.13844 -14.03417 -13.95088
-13.70447 -13.53602 -13.33911 -13.22922 -12.96552 -12.71519 -12.68857 -12.39855
-12.38182 -12.28455 -12.22032 -12.04529 -11.82831 -11.82467 -11.71002 -11.37407
-11.19798 -11.05033 -10.84816 -10.76350 -10.14308 -9.81077 -4.92502 -1.32218
-0.25319 0.14851 0.34529 1.19010 1.19410 1.26112 1.42439 1.60398
1.80560 2.01234 2.04067 2.30799 3.10204 3.22974 3.33823 3.43590
3.46696 3.50773 3.59688 3.70659 3.75598 3.79817 3.85276 3.90951
3.93407 4.01437 4.26073 4.28243 4.28363 4.38671 4.43666 4.52417
4.55095 4.62786 4.63135 4.69392 4.77785 4.82985 4.83483 4.89246
5.05507 5.06668 5.12411 5.18522 5.21627 5.43313 5.58766 5.74994
6.40925 6.43009 6.43722 6.72572 7.13845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.370 6.370
3 C 0.455 3.545
4 O -0.542 6.542
5 C -0.103 4.103
6 C -0.094 4.094
7 H 0.099 0.901
8 C -0.153 4.153
9 C 0.111 3.889
10 H 0.083 0.917
11 N -0.692 5.692
12 C 0.509 3.491
13 O -0.565 6.565
14 C 0.025 3.975
15 O -0.292 6.292
16 C 0.193 3.807
17 C -0.105 4.105
18 N 0.034 4.966
19 O -0.202 6.202
20 O -0.175 6.175
21 C -0.003 4.003
22 C -0.147 4.147
23 C -0.091 4.091
24 O -0.551 6.551
25 Si 0.790 3.210
26 C -0.004 4.004
27 C -0.189 4.189
28 C -0.117 4.117
29 H 0.061 0.939
30 H 0.126 0.874
31 H 0.056 0.944
32 H 0.136 0.864
33 H 0.125 0.875
34 H 0.096 0.904
35 H 0.050 0.950
36 H 0.421 0.579
37 H 0.140 0.860
38 H 0.149 0.851
39 H 0.151 0.849
40 H 0.128 0.872
41 H 0.389 0.611
42 H -0.263 1.263
43 H -0.309 1.309
44 H 0.189 0.811
45 H 0.206 0.794
46 H 0.097 0.903
47 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.492 -5.815 -15.336 16.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.286 6.286
3 C 0.300 3.700
4 O -0.431 6.431
5 C -0.140 4.140
6 C -0.112 4.112
7 H 0.117 0.883
8 C -0.192 4.192
9 C 0.005 3.995
10 H 0.102 0.898
11 N -0.346 5.346
12 C 0.295 3.705
13 O -0.442 6.442
14 C -0.052 4.052
15 O -0.202 6.202
16 C 0.143 3.857
17 C -0.190 4.190
18 N 0.544 4.456
19 O -0.410 6.410
20 O -0.388 6.388
21 C -0.022 4.022
22 C -0.149 4.149
23 C -0.197 4.197
24 O -0.359 6.359
25 Si 0.692 3.308
26 C -0.021 4.021
27 C -0.208 4.208
28 C -0.154 4.154
29 H 0.080 0.920
30 H 0.144 0.856
31 H 0.075 0.925
32 H 0.154 0.846
33 H 0.143 0.857
34 H 0.114 0.886
35 H 0.069 0.931
36 H 0.260 0.740
37 H 0.157 0.843
38 H 0.166 0.834
39 H 0.169 0.831
40 H 0.146 0.854
41 H 0.238 0.762
42 H -0.188 1.188
43 H -0.237 1.237
44 H 0.206 0.794
45 H 0.222 0.778
46 H 0.116 0.884
47 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -3.693 -4.930 -15.346 16.536
hybrid contribution -1.040 0.343 1.866 2.164
sum -4.733 -4.587 -13.480 15.005
Atomic orbital electron populations
1.23461 0.75379 1.05386 1.02241 1.86519 1.24558 1.33731 1.83815
1.24586 0.93626 0.80784 0.71005 1.90662 1.68308 1.37342 1.46835
1.21605 0.84970 0.99276 1.08103 1.22452 0.97140 0.94070 0.97549
0.88287 1.23567 0.97650 1.00088 0.97860 1.21876 0.97979 0.82069
0.97543 0.89846 1.45323 1.62385 1.03952 1.22947 1.20525 0.78105
0.86597 0.85262 1.90846 1.43224 1.87630 1.22504 1.23114 1.04769
0.83193 0.94119 1.86472 1.76331 1.11814 1.45546 1.18984 0.91158
0.82988 0.92522 1.20866 1.15556 0.96011 0.86558 1.43899 0.98395
1.00280 1.02999 1.94500 1.54159 1.38461 1.53842 1.94681 1.60064
1.06072 1.78007 1.20844 0.92215 0.92604 0.96541 1.20381 1.02520
0.98007 0.93979 1.25520 1.01491 0.88653 1.04084 1.86632 1.29973
1.56672 1.62645 0.94173 0.81337 0.80140 0.75110 1.21718 0.90702
0.90582 0.99134 1.21807 1.04167 1.00684 0.94093 1.23332 0.94682
0.97501 0.99922 0.91991 0.85626 0.92472 0.84646 0.85748 0.88603
0.93065 0.74049 0.84268 0.83353 0.83147 0.85412 0.76169 1.18823
1.23715 0.79426 0.77762 0.88435 0.86620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16
2 O -0.37 -0.23 10.57 -51.41 -0.54 -0.77 16
3 C 0.45 0.22 7.96 71.24 0.57 0.79 16
4 O -0.54 -3.73 15.51 21.96 0.34 -3.38 16
5 C -0.10 0.80 5.65 29.85 0.17 0.97 16
6 C -0.09 0.68 3.03 -10.27 -0.03 0.65 16
7 H 0.10 -0.62 7.68 -2.38 -0.02 -0.64 16
8 C -0.15 0.35 7.43 31.12 0.23 0.58 16
9 C 0.11 -0.36 4.32 45.52 0.20 -0.16 16
10 H 0.08 0.21 7.46 -2.39 -0.02 0.19 16
11 N -0.69 3.76 5.26 -440.03 -2.32 1.44 16
12 C 0.51 0.92 7.91 87.65 0.69 1.61 16
13 O -0.56 -8.79 16.10 16.00 0.26 -8.53 16
14 C 0.02 -0.17 5.22 71.24 0.37 0.21 16
15 O -0.29 -1.47 7.68 -63.42 -0.49 -1.95 16
16 C 0.19 0.19 6.67 22.51 0.15 0.34 16
17 C -0.10 -0.77 6.87 36.48 0.25 -0.52 16
18 N 0.03 0.59 4.45 -46.24 -0.21 0.39 16
19 O -0.20 -3.86 18.45 18.89 0.35 -3.51 16
20 O -0.17 -3.89 17.24 25.61 0.44 -3.45 16
21 C 0.00 -0.01 9.11 22.25 0.20 0.20 16
22 C -0.15 0.82 5.39 -19.85 -0.11 0.71 16
23 C -0.09 0.56 2.82 71.24 0.20 0.76 16
24 O -0.55 0.61 12.77 -148.98 -1.90 -1.29 16
25 Si 0.79 -7.79 29.78 68.60 2.04 -5.75 16
26 C 0.00 0.05 8.66 22.26 0.19 0.24 16
27 C -0.19 1.98 9.04 22.37 0.20 2.18 16
28 C -0.12 1.20 7.39 31.12 0.23 1.43 16
29 H 0.06 -0.13 8.13 -2.38 -0.02 -0.15 16
30 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16
31 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16
32 H 0.14 -1.70 8.14 -2.39 -0.02 -1.72 16
33 H 0.12 -1.29 7.84 -2.39 -0.02 -1.31 16
34 H 0.10 -0.29 7.89 -2.39 -0.02 -0.31 16
35 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16
36 H 0.42 -5.66 8.70 -92.71 -0.81 -6.46 16
37 H 0.14 -2.02 7.66 -2.39 -0.02 -2.04 16
38 H 0.15 -2.39 7.66 -2.39 -0.02 -2.41 16
39 H 0.15 0.60 7.61 -2.91 -0.02 0.58 16
40 H 0.13 -0.88 7.96 -2.39 -0.02 -0.90 16
41 H 0.39 -2.84 8.70 -74.06 -0.64 -3.49 16
42 H -0.26 2.22 7.11 99.48 0.71 2.92 16
43 H -0.31 -0.05 7.11 99.48 0.71 0.66 16
44 H 0.19 -3.59 4.88 -2.91 -0.01 -3.61 16
45 H 0.21 -4.17 6.30 -2.91 -0.02 -4.19 16
46 H 0.10 -1.28 8.14 -2.38 -0.02 -1.30 16
47 H 0.12 -1.43 8.10 -2.39 -0.02 -1.45 16
Total: 0.00 -44.58 407.32 2.34 -42.24
By element:
Atomic # 1 Polarization: -26.19 SS G_CDS: -0.36 Total: -26.55 kcal
Atomic # 6 Polarization: 6.40 SS G_CDS: 4.72 Total: 11.12 kcal
Atomic # 7 Polarization: 4.35 SS G_CDS: -2.52 Total: 1.83 kcal
Atomic # 8 Polarization: -21.35 SS G_CDS: -1.54 Total: -22.89 kcal
Atomic # 14 Polarization: -7.79 SS G_CDS: 2.04 Total: -5.75 kcal
Total: -44.58 2.34 -42.24 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_4549638.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.053 kcal
(2) G-P(sol) polarization free energy of solvation -44.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.632 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds