Wall clock time and date at job start Sun Mar 7 2021 08:11:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34222 * 117.00224 * 2 1
4 4 O 1.20824 * 119.99858 * 359.97438 * 3 2 1
5 5 C 1.50693 * 120.00237 * 179.97438 * 3 2 1
6 6 C 1.53000 * 109.47442 * 179.97438 * 5 3 2
7 7 H 1.08995 * 112.85362 * 314.67010 * 6 5 3
8 8 C 1.53795 * 113.61137 * 85.86395 * 6 5 3
9 9 C 1.54050 * 86.98265 * 140.01901 * 8 6 5
10 10 H 1.08994 * 113.61805 * 220.01414 * 9 8 6
11 11 N 1.46500 * 113.61042 * 89.11534 * 9 8 6
12 12 C 1.34781 * 119.99912 * 107.50495 * 11 9 8
13 13 O 1.21549 * 119.99927 * 0.02562 * 12 11 9
14 14 C 1.47848 * 120.00136 * 179.97438 * 12 11 9
15 15 C 1.39558 * 120.14268 * 353.75722 * 14 12 11
16 16 C 1.37977 * 119.85583 * 179.97438 * 15 14 12
17 17 C 1.50700 * 119.93324 * 179.97438 * 16 15 14
18 18 O 1.42898 * 109.46982 * 105.00067 * 17 16 15
19 19 Si 1.86299 * 109.46893 * 345.00572 * 17 16 15
20 20 C 1.38345 * 120.14185 * 359.97438 * 16 15 14
21 21 C 1.50702 * 119.85220 * 180.02562 * 20 16 15
22 22 C 1.38383 * 120.28990 * 0.02562 * 20 16 15
23 23 C 1.37930 * 120.14585 * 359.74245 * 22 20 16
24 24 C 1.50703 * 120.07250 * 180.27507 * 23 22 20
25 25 C 1.53773 * 87.08237 * 334.57014 * 9 8 6
26 26 H 1.08995 * 109.47393 * 300.00251 * 1 2 3
27 27 H 1.09003 * 109.47117 * 60.00313 * 1 2 3
28 28 H 1.09000 * 109.47008 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47530 * 59.99999 * 5 3 2
30 30 H 1.09002 * 109.47332 * 299.99592 * 5 3 2
31 31 H 1.08997 * 113.60995 * 254.61380 * 8 6 5
32 32 H 1.08999 * 113.61167 * 25.51691 * 8 6 5
33 33 H 0.96994 * 120.00446 * 287.50738 * 11 9 8
34 34 H 1.08005 * 120.07345 * 359.95961 * 15 14 12
35 35 H 1.08999 * 109.47588 * 225.00561 * 17 16 15
36 36 H 0.96701 * 113.99970 * 60.00600 * 18 17 16
37 37 H 1.48504 * 109.99809 * 299.99690 * 19 17 16
38 38 H 1.48496 * 110.00329 * 61.31478 * 19 17 16
39 39 H 1.08996 * 109.46892 * 89.99572 * 21 20 16
40 40 H 1.08996 * 109.46948 * 209.99650 * 21 20 16
41 41 H 1.08996 * 109.47235 * 329.99674 * 21 20 16
42 42 H 1.07996 * 119.92061 * 180.02562 * 22 20 16
43 43 H 1.08998 * 109.47129 * 263.62699 * 24 23 22
44 44 H 1.08992 * 109.47274 * 23.62704 * 24 23 22
45 45 H 1.08997 * 109.47092 * 143.62532 * 24 23 22
46 46 H 1.09007 * 113.61470 * 270.88078 * 25 9 8
47 47 H 1.08997 * 113.69657 * 139.98956 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2092 -0.0005
5 6 3.5663 1.2748 0.0006
6 6 4.0002 2.7420 -0.0002
7 1 3.4434 3.3477 -0.7151
8 6 4.0768 3.3624 1.4050
9 6 5.3573 4.0760 0.9313
10 1 6.1438 4.1077 1.6852
11 7 5.1075 5.3802 0.3126
12 6 5.4322 6.5112 0.9700
13 8 5.9326 6.4489 2.0759
14 6 5.1807 7.8274 0.3453
15 6 4.7295 7.9027 -0.9731
16 6 4.4962 9.1342 -1.5500
17 6 4.0095 9.2176 -2.9738
18 8 2.6209 9.5548 -2.9835
19 14 4.2545 7.5715 -3.8112
20 6 4.7081 10.2927 -0.8241
21 6 4.4506 11.6343 -1.4605
22 6 5.1554 10.2250 0.4836
23 6 5.3879 9.0001 1.0737
24 6 5.8691 8.9281 2.5000
25 6 5.5236 2.9339 -0.0849
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 3.9564 0.7805 -0.8891
30 1 3.9557 0.7809 0.8909
31 1 3.2538 4.0414 1.6278
32 1 4.2507 2.6325 2.1956
33 1 4.7085 5.4299 -0.5701
34 1 4.5635 6.9990 -1.5408
35 1 4.5732 9.9835 -3.5063
36 1 2.4189 10.4018 -2.5629
37 1 5.6947 7.2093 -3.8076
38 1 3.4658 6.5243 -3.1137
39 1 3.4161 11.9281 -1.2829
40 1 5.1191 12.3771 -1.0253
41 1 4.6303 11.5680 -2.5335
42 1 5.3185 11.1331 1.0449
43 1 6.9541 8.8239 2.5126
44 1 5.5856 9.8399 3.0255
45 1 5.4158 8.0684 2.9934
46 1 6.0924 2.0870 0.2992
47 1 5.8681 3.2658 -1.0643
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16627170_9599494.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:11:38
Heat of formation + Delta-G solvation = -106.042573 kcal
Electronic energy + Delta-G solvation = -29097.862337 eV
Core-core repulsion = 25019.943411 eV
Total energy + Delta-G solvation = -4077.918925 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 334.166 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.92637 -41.46741 -40.56839 -39.29325 -37.60394 -37.37045 -35.04090 -34.35085
-33.33477 -31.58210 -29.33807 -28.73195 -28.32395 -26.82466 -25.63982 -24.77305
-23.82607 -22.70639 -21.84706 -21.02011 -20.25499 -18.95515 -18.53015 -18.31047
-17.67299 -17.49377 -17.19376 -16.68919 -16.44247 -16.37408 -16.15363 -15.65769
-15.40769 -15.17288 -14.97963 -14.79613 -14.60673 -14.56507 -14.13055 -14.04719
-13.84252 -13.61325 -13.55043 -13.43507 -13.03473 -12.96044 -12.86026 -12.77477
-12.69289 -12.59972 -12.20134 -12.16865 -11.77746 -11.71491 -11.36836 -11.34571
-11.31943 -11.13832 -10.58836 -10.14076 -9.94386 -9.63984 -4.91001 -0.27975
0.13516 1.23930 1.27259 1.56445 1.72874 1.77099 1.85924 2.01478
2.64242 3.31070 3.35889 3.40892 3.48819 3.52899 3.63174 3.70849
3.74805 3.77796 3.85550 4.00007 4.07340 4.17059 4.22874 4.26489
4.30317 4.32792 4.39857 4.40601 4.43066 4.49034 4.57818 4.60662
4.63695 4.65355 4.72630 4.81888 4.89837 4.91571 4.97646 5.01650
5.03676 5.09258 5.25454 5.36294 5.43091 5.50399 5.57960 5.76302
6.40347 6.44912 6.77105 7.16725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.362 6.362
3 C 0.458 3.542
4 O -0.504 6.504
5 C -0.105 4.105
6 C -0.104 4.104
7 H 0.100 0.900
8 C -0.146 4.146
9 C 0.120 3.880
10 H 0.110 0.890
11 N -0.712 5.712
12 C 0.563 3.437
13 O -0.523 6.523
14 C -0.142 4.142
15 C -0.077 4.077
16 C -0.129 4.129
17 C -0.082 4.082
18 O -0.533 6.533
19 Si 0.741 3.259
20 C -0.041 4.041
21 C -0.130 4.130
22 C -0.127 4.127
23 C -0.010 4.010
24 C -0.123 4.123
25 C -0.140 4.140
26 H 0.063 0.937
27 H 0.063 0.937
28 H 0.103 0.897
29 H 0.110 0.890
30 H 0.110 0.890
31 H 0.076 0.924
32 H 0.094 0.906
33 H 0.398 0.602
34 H 0.122 0.878
35 H 0.078 0.922
36 H 0.363 0.637
37 H -0.246 1.246
38 H -0.251 1.251
39 H 0.080 0.920
40 H 0.076 0.924
41 H 0.074 0.926
42 H 0.135 0.865
43 H 0.079 0.921
44 H 0.061 0.939
45 H 0.096 0.904
46 H 0.103 0.897
47 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.544 -0.350 -3.971 4.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.279 6.279
3 C 0.301 3.699
4 O -0.391 6.391
5 C -0.142 4.142
6 C -0.123 4.123
7 H 0.118 0.882
8 C -0.184 4.184
9 C 0.015 3.985
10 H 0.128 0.872
11 N -0.363 5.363
12 C 0.352 3.648
13 O -0.401 6.401
14 C -0.145 4.145
15 C -0.095 4.095
16 C -0.130 4.130
17 C -0.191 4.191
18 O -0.338 6.338
19 Si 0.639 3.361
20 C -0.041 4.041
21 C -0.186 4.186
22 C -0.145 4.145
23 C -0.011 4.011
24 C -0.179 4.179
25 C -0.178 4.178
26 H 0.082 0.918
27 H 0.082 0.918
28 H 0.121 0.879
29 H 0.128 0.872
30 H 0.128 0.872
31 H 0.095 0.905
32 H 0.112 0.888
33 H 0.233 0.767
34 H 0.139 0.861
35 H 0.096 0.904
36 H 0.211 0.789
37 H -0.171 1.171
38 H -0.176 1.176
39 H 0.099 0.901
40 H 0.095 0.905
41 H 0.093 0.907
42 H 0.153 0.847
43 H 0.097 0.903
44 H 0.080 0.920
45 H 0.115 0.885
46 H 0.121 0.879
47 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 0.914 -1.496 -3.381 3.808
hybrid contribution -0.348 1.104 0.833 1.427
sum 0.566 -0.392 -2.548 2.639
Atomic orbital electron populations
1.23297 0.75967 1.03922 1.02686 1.86506 1.23768 1.33526 1.84072
1.23832 0.92310 0.81392 0.72373 1.90694 1.67250 1.36333 1.44840
1.21440 0.87583 0.98983 1.06194 1.22535 0.96251 0.94071 0.99397
0.88187 1.23563 0.98468 1.00038 0.96371 1.21869 0.98702 0.81431
0.96481 0.87242 1.45627 1.64305 1.05229 1.21147 1.18205 0.77753
0.83763 0.85078 1.90744 1.43177 1.87011 1.19144 1.19649 1.06894
0.93348 0.94660 1.21060 0.97249 0.97096 0.94132 1.20041 1.03060
0.92796 0.97054 1.25306 0.85175 1.13558 0.95061 1.86788 1.21875
1.43081 1.82079 0.93017 0.80126 0.72731 0.90242 1.19993 0.95289
0.95071 0.93774 1.21004 1.03025 0.93245 1.01303 1.21019 1.01391
0.97497 0.94578 1.20102 0.93184 0.91266 0.96574 1.21120 1.02263
1.03578 0.90952 1.23410 0.95632 0.98592 1.00162 0.91806 0.91783
0.87907 0.87225 0.87204 0.90529 0.88769 0.76671 0.86053 0.90416
0.78921 1.17090 1.17609 0.90130 0.90506 0.90675 0.84723 0.90286
0.92023 0.88530 0.87866 0.90421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16
2 O -0.36 -0.56 10.56 -39.24 -0.41 -0.97 16
3 C 0.46 0.84 7.96 36.00 0.29 1.12 16
4 O -0.50 -2.50 15.54 -18.75 -0.29 -2.79 16
5 C -0.10 0.17 5.63 -27.89 -0.16 0.01 16
6 C -0.10 0.08 2.99 -89.80 -0.27 -0.18 16
7 H 0.10 0.06 7.73 -51.93 -0.40 -0.34 16
8 C -0.15 -0.05 7.45 -25.77 -0.19 -0.24 16
9 C 0.12 0.06 4.33 -66.98 -0.29 -0.23 16
10 H 0.11 0.16 7.46 -51.93 -0.39 -0.23 16
11 N -0.71 -1.21 5.21 -53.83 -0.28 -1.49 16
12 C 0.56 2.26 7.70 -12.33 -0.09 2.16 16
13 O -0.52 -3.26 12.96 5.32 0.07 -3.19 16
14 C -0.14 -0.49 5.87 -104.97 -0.62 -1.10 16
15 C -0.08 -0.19 8.13 -39.18 -0.32 -0.51 16
16 C -0.13 -0.20 5.26 -104.68 -0.55 -0.75 16
17 C -0.08 0.00 2.09 36.01 0.08 0.08 16
18 O -0.53 -0.33 12.65 -35.23 -0.45 -0.78 16
19 Si 0.74 -0.42 30.40 -169.99 -5.17 -5.58 16
20 C -0.04 -0.03 5.87 -104.53 -0.61 -0.64 16
21 C -0.13 0.29 8.73 36.01 0.31 0.60 16
22 C -0.13 -0.15 9.31 -39.64 -0.37 -0.52 16
23 C -0.01 -0.03 5.91 -104.23 -0.62 -0.65 16
24 C -0.12 -0.31 8.73 36.01 0.31 0.01 16
25 C -0.14 0.28 7.39 -25.92 -0.19 0.09 16
26 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16
27 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16
28 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16
29 H 0.11 -0.37 8.14 -51.93 -0.42 -0.79 16
30 H 0.11 -0.35 7.88 -51.93 -0.41 -0.76 16
31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16
32 H 0.09 -0.08 7.92 -51.93 -0.41 -0.49 16
33 H 0.40 0.18 6.77 -40.82 -0.28 -0.10 16
34 H 0.12 0.17 3.32 -52.48 -0.17 0.00 16
35 H 0.08 -0.14 6.48 -51.93 -0.34 -0.48 16
36 H 0.36 -0.72 7.71 45.56 0.35 -0.37 16
37 H -0.25 -0.18 7.11 56.52 0.40 0.23 16
38 H -0.25 -0.39 6.81 56.52 0.38 -0.01 16
39 H 0.08 -0.27 7.77 -51.93 -0.40 -0.67 16
40 H 0.08 -0.21 8.08 -51.93 -0.42 -0.63 16
41 H 0.07 -0.22 6.22 -51.93 -0.32 -0.54 16
42 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16
43 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16
44 H 0.06 0.05 8.04 -51.93 -0.42 -0.37 16
45 H 0.10 0.41 5.87 -51.93 -0.30 0.11 16
46 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16
47 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16
LS Contribution 379.53 15.07 5.72 5.72
Total: 0.00 -8.15 379.53 -9.96 -18.11
By element:
Atomic # 1 Polarization: -2.41 SS G_CDS: -6.93 Total: -9.34 kcal
Atomic # 6 Polarization: 2.54 SS G_CDS: -2.22 Total: 0.31 kcal
Atomic # 7 Polarization: -1.21 SS G_CDS: -0.28 Total: -1.49 kcal
Atomic # 8 Polarization: -6.65 SS G_CDS: -1.08 Total: -7.73 kcal
Atomic # 14 Polarization: -0.42 SS G_CDS: -5.17 Total: -5.58 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -8.15 -9.96 -18.11 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_9599494.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.933 kcal
(2) G-P(sol) polarization free energy of solvation -8.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.043 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds