Wall clock time and date at job start Sun Mar 7 2021 08:11:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34222 * 117.00224 * 2 1
4 4 O 1.20824 * 119.99858 * 359.97438 * 3 2 1
5 5 C 1.50693 * 120.00237 * 179.97438 * 3 2 1
6 6 C 1.53000 * 109.47442 * 179.97438 * 5 3 2
7 7 H 1.08995 * 112.85362 * 314.67010 * 6 5 3
8 8 C 1.53795 * 113.61137 * 85.86395 * 6 5 3
9 9 C 1.54050 * 86.98265 * 140.01901 * 8 6 5
10 10 H 1.08994 * 113.61805 * 220.01414 * 9 8 6
11 11 N 1.46500 * 113.61042 * 89.11534 * 9 8 6
12 12 C 1.34781 * 119.99912 * 107.50495 * 11 9 8
13 13 O 1.21549 * 119.99927 * 0.02562 * 12 11 9
14 14 C 1.47848 * 120.00136 * 179.97438 * 12 11 9
15 15 C 1.39558 * 120.14268 * 353.75722 * 14 12 11
16 16 C 1.37977 * 119.85583 * 179.97438 * 15 14 12
17 17 C 1.50700 * 119.93324 * 179.97438 * 16 15 14
18 18 O 1.42898 * 109.46982 * 105.00067 * 17 16 15
19 19 Si 1.86299 * 109.46893 * 345.00572 * 17 16 15
20 20 C 1.38345 * 120.14185 * 359.97438 * 16 15 14
21 21 C 1.50702 * 119.85220 * 180.02562 * 20 16 15
22 22 C 1.38383 * 120.28990 * 0.02562 * 20 16 15
23 23 C 1.37930 * 120.14585 * 359.74245 * 22 20 16
24 24 C 1.50703 * 120.07250 * 180.27507 * 23 22 20
25 25 C 1.53773 * 87.08237 * 334.57014 * 9 8 6
26 26 H 1.08995 * 109.47393 * 300.00251 * 1 2 3
27 27 H 1.09003 * 109.47117 * 60.00313 * 1 2 3
28 28 H 1.09000 * 109.47008 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47530 * 59.99999 * 5 3 2
30 30 H 1.09002 * 109.47332 * 299.99592 * 5 3 2
31 31 H 1.08997 * 113.60995 * 254.61380 * 8 6 5
32 32 H 1.08999 * 113.61167 * 25.51691 * 8 6 5
33 33 H 0.96994 * 120.00446 * 287.50738 * 11 9 8
34 34 H 1.08005 * 120.07345 * 359.95961 * 15 14 12
35 35 H 1.08999 * 109.47588 * 225.00561 * 17 16 15
36 36 H 0.96701 * 113.99970 * 60.00600 * 18 17 16
37 37 H 1.48504 * 109.99809 * 299.99690 * 19 17 16
38 38 H 1.48496 * 110.00329 * 61.31478 * 19 17 16
39 39 H 1.08996 * 109.46892 * 89.99572 * 21 20 16
40 40 H 1.08996 * 109.46948 * 209.99650 * 21 20 16
41 41 H 1.08996 * 109.47235 * 329.99674 * 21 20 16
42 42 H 1.07996 * 119.92061 * 180.02562 * 22 20 16
43 43 H 1.08998 * 109.47129 * 263.62699 * 24 23 22
44 44 H 1.08992 * 109.47274 * 23.62704 * 24 23 22
45 45 H 1.08997 * 109.47092 * 143.62532 * 24 23 22
46 46 H 1.09007 * 113.61470 * 270.88078 * 25 9 8
47 47 H 1.08997 * 113.69657 * 139.98956 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2092 -0.0005
5 6 3.5663 1.2748 0.0006
6 6 4.0002 2.7420 -0.0002
7 1 3.4434 3.3477 -0.7151
8 6 4.0768 3.3624 1.4050
9 6 5.3573 4.0760 0.9313
10 1 6.1438 4.1077 1.6852
11 7 5.1075 5.3802 0.3126
12 6 5.4322 6.5112 0.9700
13 8 5.9326 6.4489 2.0759
14 6 5.1807 7.8274 0.3453
15 6 4.7295 7.9027 -0.9731
16 6 4.4962 9.1342 -1.5500
17 6 4.0095 9.2176 -2.9738
18 8 2.6209 9.5548 -2.9835
19 14 4.2545 7.5715 -3.8112
20 6 4.7081 10.2927 -0.8241
21 6 4.4506 11.6343 -1.4605
22 6 5.1554 10.2250 0.4836
23 6 5.3879 9.0001 1.0737
24 6 5.8691 8.9281 2.5000
25 6 5.5236 2.9339 -0.0849
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 3.9564 0.7805 -0.8891
30 1 3.9557 0.7809 0.8909
31 1 3.2538 4.0414 1.6278
32 1 4.2507 2.6325 2.1956
33 1 4.7085 5.4299 -0.5701
34 1 4.5635 6.9990 -1.5408
35 1 4.5732 9.9835 -3.5063
36 1 2.4189 10.4018 -2.5629
37 1 5.6947 7.2093 -3.8076
38 1 3.4658 6.5243 -3.1137
39 1 3.4161 11.9281 -1.2829
40 1 5.1191 12.3771 -1.0253
41 1 4.6303 11.5680 -2.5335
42 1 5.3185 11.1331 1.0449
43 1 6.9541 8.8239 2.5126
44 1 5.5856 9.8399 3.0255
45 1 5.4158 8.0684 2.9934
46 1 6.0924 2.0870 0.2992
47 1 5.8681 3.2658 -1.0643
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16627170_9599494.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 08:11:37
Heat of formation + Delta-G solvation = -103.116388 kcal
Electronic energy + Delta-G solvation = -29097.735448 eV
Core-core repulsion = 25019.943411 eV
Total energy + Delta-G solvation = -4077.792036 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 334.166 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.06241 -41.59547 -40.64892 -39.43226 -37.66573 -37.52169 -35.22207 -34.41934
-33.41079 -31.59709 -29.43780 -28.73619 -28.31277 -26.79899 -25.72530 -24.82902
-23.89266 -22.83301 -21.94265 -21.14369 -20.29335 -19.07650 -18.64161 -18.35927
-17.75206 -17.59049 -17.28909 -16.77633 -16.58747 -16.45636 -16.31309 -15.68862
-15.44809 -15.19522 -15.02143 -14.85554 -14.70785 -14.60875 -14.22382 -14.08404
-13.87596 -13.63918 -13.52762 -13.42294 -13.08857 -13.00948 -12.89582 -12.79848
-12.72163 -12.65202 -12.29551 -12.13128 -11.88412 -11.82535 -11.46926 -11.37770
-11.32268 -11.15170 -10.81546 -10.32273 -10.04257 -9.75697 -4.89292 -0.42647
0.01089 1.12481 1.28737 1.52251 1.60746 1.73162 1.86465 1.87991
2.48513 3.30248 3.32464 3.37397 3.43065 3.44886 3.65890 3.67966
3.74105 3.80357 3.85209 3.98508 4.04871 4.21817 4.23753 4.29759
4.31813 4.40082 4.42332 4.45425 4.51546 4.56591 4.62948 4.66269
4.67773 4.70204 4.71927 4.74283 4.77842 4.92861 4.93678 4.97150
5.02192 5.09224 5.17884 5.31797 5.34963 5.37003 5.48344 5.68121
6.21058 6.60034 6.66351 6.92600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.366 6.366
3 C 0.454 3.546
4 O -0.545 6.545
5 C -0.099 4.099
6 C -0.100 4.100
7 H 0.081 0.919
8 C -0.147 4.147
9 C 0.108 3.892
10 H 0.099 0.901
11 N -0.706 5.706
12 C 0.556 3.444
13 O -0.555 6.555
14 C -0.164 4.164
15 C -0.089 4.089
16 C -0.139 4.139
17 C -0.086 4.086
18 O -0.545 6.545
19 Si 0.792 3.208
20 C -0.037 4.037
21 C -0.129 4.129
22 C -0.130 4.130
23 C -0.028 4.028
24 C -0.117 4.117
25 C -0.119 4.119
26 H 0.057 0.943
27 H 0.059 0.941
28 H 0.129 0.871
29 H 0.136 0.864
30 H 0.134 0.866
31 H 0.045 0.955
32 H 0.109 0.891
33 H 0.403 0.597
34 H 0.123 0.877
35 H 0.103 0.897
36 H 0.375 0.625
37 H -0.264 1.264
38 H -0.288 1.288
39 H 0.096 0.904
40 H 0.086 0.914
41 H 0.086 0.914
42 H 0.156 0.844
43 H 0.073 0.927
44 H 0.079 0.921
45 H 0.074 0.926
46 H 0.129 0.871
47 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.989 -0.064 -5.182 5.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.282 6.282
3 C 0.300 3.700
4 O -0.435 6.435
5 C -0.136 4.136
6 C -0.119 4.119
7 H 0.099 0.901
8 C -0.186 4.186
9 C 0.003 3.997
10 H 0.117 0.883
11 N -0.357 5.357
12 C 0.346 3.654
13 O -0.435 6.435
14 C -0.167 4.167
15 C -0.107 4.107
16 C -0.140 4.140
17 C -0.194 4.194
18 O -0.352 6.352
19 Si 0.694 3.306
20 C -0.038 4.038
21 C -0.185 4.185
22 C -0.147 4.147
23 C -0.029 4.029
24 C -0.173 4.173
25 C -0.157 4.157
26 H 0.076 0.924
27 H 0.078 0.922
28 H 0.147 0.853
29 H 0.154 0.846
30 H 0.152 0.848
31 H 0.064 0.936
32 H 0.127 0.873
33 H 0.239 0.761
34 H 0.140 0.860
35 H 0.121 0.879
36 H 0.225 0.775
37 H -0.190 1.190
38 H -0.215 1.215
39 H 0.114 0.886
40 H 0.105 0.895
41 H 0.104 0.896
42 H 0.174 0.826
43 H 0.091 0.909
44 H 0.098 0.902
45 H 0.092 0.908
46 H 0.147 0.853
47 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 1.351 -1.220 -4.619 4.965
hybrid contribution -0.553 0.999 1.231 1.679
sum 0.798 -0.221 -3.388 3.488
Atomic orbital electron populations
1.23477 0.75321 1.05499 1.02192 1.86510 1.24584 1.33377 1.83769
1.24567 0.93611 0.80844 0.71018 1.90683 1.68369 1.37563 1.46878
1.21567 0.85075 0.98445 1.08487 1.22423 0.97081 0.94551 0.97827
0.90092 1.23594 0.97212 0.99974 0.97796 1.22044 0.98505 0.81630
0.97496 0.88338 1.45657 1.63512 1.05383 1.21145 1.18468 0.77484
0.84626 0.84853 1.90716 1.44879 1.87518 1.20366 1.19740 1.08267
0.93295 0.95360 1.21191 0.97656 0.97933 0.93949 1.20341 1.02887
0.92694 0.98044 1.25380 0.85306 1.14561 0.94184 1.86751 1.22077
1.44147 1.82272 0.92513 0.77723 0.71254 0.89107 1.20362 0.93748
0.96218 0.93445 1.21104 1.04169 0.91491 1.01755 1.21301 1.00834
0.97493 0.95119 1.20291 0.93921 0.91949 0.96738 1.21014 1.01664
1.03436 0.91148 1.23374 0.94736 0.97881 0.99714 0.92435 0.92225
0.85302 0.84624 0.84849 0.93600 0.87266 0.76131 0.85973 0.87911
0.77512 1.18995 1.21487 0.88609 0.89535 0.89569 0.82607 0.90889
0.90179 0.90782 0.85262 0.89714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.00 10.56 113.37 1.20 1.20 16
2 O -0.37 -1.15 10.56 -51.34 -0.54 -1.70 16
3 C 0.45 1.93 7.96 71.23 0.57 2.50 16
4 O -0.54 -6.47 15.54 21.97 0.34 -6.13 16
5 C -0.10 0.40 5.63 29.85 0.17 0.57 16
6 C -0.10 0.10 2.99 -10.26 -0.03 0.07 16
7 H 0.08 0.25 7.73 -2.39 -0.02 0.23 16
8 C -0.15 -0.35 7.45 31.22 0.23 -0.12 16
9 C 0.11 0.28 4.33 45.61 0.20 0.47 16
10 H 0.10 0.48 7.46 -2.39 -0.02 0.46 16
11 N -0.71 -4.19 5.21 -442.48 -2.31 -6.50 16
12 C 0.56 6.12 7.70 86.79 0.67 6.78 16
13 O -0.55 -8.76 12.96 -3.87 -0.05 -8.81 16
14 C -0.16 -1.49 5.87 -20.09 -0.12 -1.61 16
15 C -0.09 -0.58 8.13 22.53 0.18 -0.39 16
16 C -0.14 -0.44 5.26 -19.90 -0.10 -0.54 16
17 C -0.09 0.07 2.09 71.24 0.15 0.21 16
18 O -0.55 -0.21 12.65 -148.98 -1.89 -2.10 16
19 Si 0.79 -0.51 30.40 68.60 2.09 1.58 16
20 C -0.04 -0.02 5.87 -19.80 -0.12 -0.14 16
21 C -0.13 0.85 8.73 71.24 0.62 1.47 16
22 C -0.13 -0.30 9.31 22.23 0.21 -0.10 16
23 C -0.03 -0.20 5.91 -19.61 -0.12 -0.32 16
24 C -0.12 -0.81 8.73 71.24 0.62 -0.18 16
25 C -0.12 0.53 7.39 31.12 0.23 0.76 16
26 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16
27 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16
28 H 0.13 -0.74 8.14 -2.39 -0.02 -0.75 16
29 H 0.14 -1.20 8.14 -2.39 -0.02 -1.22 16
30 H 0.13 -1.12 7.88 -2.39 -0.02 -1.14 16
31 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16
32 H 0.11 -0.12 7.92 -2.39 -0.02 -0.14 16
33 H 0.40 1.42 6.77 -92.71 -0.63 0.79 16
34 H 0.12 0.62 3.32 -2.91 -0.01 0.61 16
35 H 0.10 -0.58 6.48 -2.39 -0.02 -0.60 16
36 H 0.38 -2.03 7.71 -74.06 -0.57 -2.60 16
37 H -0.26 -0.55 7.11 99.48 0.71 0.15 16
38 H -0.29 -1.49 6.81 99.48 0.68 -0.82 16
39 H 0.10 -0.87 7.77 -2.39 -0.02 -0.89 16
40 H 0.09 -0.68 8.08 -2.39 -0.02 -0.70 16
41 H 0.09 -0.72 6.22 -2.39 -0.01 -0.74 16
42 H 0.16 -0.42 8.06 -2.91 -0.02 -0.44 16
43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
44 H 0.08 0.18 8.04 -2.39 -0.02 0.16 16
45 H 0.07 0.86 5.87 -2.39 -0.01 0.85 16
46 H 0.13 -1.19 8.10 -2.38 -0.02 -1.21 16
47 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16
Total: 0.00 -22.48 379.53 2.02 -20.46
By element:
Atomic # 1 Polarization: -7.27 SS G_CDS: -0.18 Total: -7.45 kcal
Atomic # 6 Polarization: 6.09 SS G_CDS: 4.56 Total: 10.65 kcal
Atomic # 7 Polarization: -4.19 SS G_CDS: -2.31 Total: -6.50 kcal
Atomic # 8 Polarization: -16.61 SS G_CDS: -2.14 Total: -18.74 kcal
Atomic # 14 Polarization: -0.51 SS G_CDS: 2.09 Total: 1.58 kcal
Total: -22.48 2.02 -20.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16627170_9599494.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.655 kcal
(2) G-P(sol) polarization free energy of solvation -22.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.116 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds