Wall clock time and date at job start Sun Mar 7 2021 08:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 C 1.52996 * 109.47298 * 180.27355 * 5 3 2 7 7 H 1.08997 * 112.84579 * 43.81252 * 6 5 3 8 8 C 1.53785 * 113.61286 * 174.99945 * 6 5 3 9 9 C 1.53788 * 87.08050 * 139.98379 * 8 6 5 10 10 H 1.08992 * 113.61610 * 220.02327 * 9 8 6 11 11 N 1.46502 * 113.60942 * 89.11439 * 9 8 6 12 12 C 1.34780 * 119.99700 * 155.00015 * 11 9 8 13 13 O 1.21285 * 119.99670 * 0.02562 * 12 11 9 14 14 C 1.50693 * 120.00040 * 179.97438 * 12 11 9 15 15 N 1.46503 * 109.46999 * 180.02562 * 14 12 11 16 16 C 1.36835 * 125.06341 * 265.02273 * 15 14 12 17 17 C 1.34231 * 109.93677 * 179.97438 * 16 15 14 18 18 C 1.50701 * 126.49911 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47130 * 105.02678 * 18 17 16 20 20 Si 1.86299 * 109.47339 * 345.02996 * 18 17 16 21 21 C 1.46493 * 107.00257 * 0.02562 * 17 16 15 22 22 C 1.39591 * 134.03808 * 180.02562 * 21 17 16 23 23 C 1.36662 * 119.75903 * 179.97438 * 22 21 17 24 24 C 1.38786 * 120.53185 * 0.02562 * 23 22 21 25 25 C 1.37783 * 120.66915 * 0.02562 * 24 23 22 26 26 C 1.37688 * 125.06130 * 84.72182 * 15 14 12 27 27 C 1.53781 * 113.61738 * 272.49877 * 6 5 3 28 28 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 30 30 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 31 31 H 1.09000 * 109.47190 * 300.28291 * 5 3 2 32 32 H 1.09006 * 109.46468 * 60.27874 * 5 3 2 33 33 H 1.08997 * 113.61684 * 254.53679 * 8 6 5 34 34 H 1.09009 * 113.61434 * 25.44111 * 8 6 5 35 35 H 0.96998 * 120.00462 * 335.00886 * 11 9 8 36 36 H 1.08998 * 109.47338 * 300.00067 * 14 12 11 37 37 H 1.09001 * 109.46752 * 60.00693 * 14 12 11 38 38 H 1.08002 * 125.03204 * 359.97310 * 16 15 14 39 39 H 1.09004 * 109.47156 * 225.02773 * 18 17 16 40 40 H 0.96692 * 114.00352 * 300.00730 * 19 18 17 41 41 H 1.48500 * 110.00172 * 58.67774 * 20 18 17 42 42 H 1.48498 * 110.00132 * 179.97438 * 20 18 17 43 43 H 1.07994 * 120.12051 * 359.97438 * 22 21 17 44 44 H 1.07997 * 119.73445 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.66551 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.11744 * 180.02562 * 25 24 23 47 47 H 1.08995 * 113.61698 * 334.56842 * 27 6 5 48 48 H 1.08995 * 113.61197 * 105.47474 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 6 3.9999 2.7422 0.0119 7 1 3.4219 3.3517 0.7065 8 6 5.5202 2.9347 0.1415 9 6 5.3849 4.0697 -0.8874 10 1 6.1938 4.0961 -1.6173 11 7 5.1167 5.3782 -0.2856 12 6 5.4614 6.5046 -0.9406 13 8 5.9931 6.4348 -2.0285 14 6 5.1850 7.8506 -0.3220 15 7 5.6490 8.9073 -1.2244 16 6 6.8698 9.5214 -1.1538 17 6 6.9765 10.4410 -2.1258 18 6 8.1623 11.3327 -2.3899 19 8 8.8675 10.8595 -3.5392 20 14 9.2970 11.3109 -0.9126 21 6 5.7212 10.4142 -2.8804 22 6 5.2362 11.1206 -3.9824 23 6 3.9851 10.8528 -4.4627 24 6 3.1922 9.8842 -3.8634 25 6 3.6506 9.1758 -2.7742 26 6 4.9239 9.4264 -2.2734 27 6 4.1214 3.3540 -1.3937 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.9524 0.7785 0.8966 32 1 3.9596 0.7832 -0.8834 33 1 5.8347 3.2748 1.1281 34 1 6.1002 2.0852 -0.2194 35 1 4.6913 5.4340 0.5843 36 1 4.1136 7.9606 -0.1548 37 1 5.7112 7.9279 0.6295 38 1 7.6343 9.2991 -0.4240 39 1 7.8181 12.3514 -2.5687 40 1 9.2032 9.9571 -3.4507 41 1 9.7479 9.9227 -0.6389 42 1 10.4708 12.1860 -1.1607 43 1 5.8474 11.8760 -4.4536 44 1 3.6104 11.3993 -5.3156 45 1 2.2057 9.6836 -4.2548 46 1 3.0262 8.4237 -2.3149 47 1 4.3190 2.6193 -2.1742 48 1 3.3068 4.0327 -1.6463 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16627170_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:11:42 Heat of formation + Delta-G solvation = -54.141658 kcal Electronic energy + Delta-G solvation = -31530.920669 eV Core-core repulsion = 27133.374144 eV Total energy + Delta-G solvation = -4397.546525 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56528 -41.74138 -41.01584 -39.46650 -38.16497 -37.71000 -37.49325 -34.81680 -34.04545 -31.84591 -31.22332 -30.25840 -29.02739 -28.32018 -26.71452 -25.93741 -24.59952 -23.74752 -22.82228 -21.89362 -21.88151 -20.69386 -20.24268 -18.77199 -18.56328 -18.52303 -17.76260 -17.68172 -17.52706 -17.36642 -16.79503 -16.42317 -16.35675 -16.11560 -15.82023 -15.52910 -15.25321 -15.12330 -14.89620 -14.74312 -14.69137 -14.43273 -14.13288 -14.08935 -13.76771 -13.57246 -13.38268 -13.19983 -12.98677 -12.74542 -12.70491 -12.58935 -12.39202 -12.09384 -12.01811 -11.84621 -11.74829 -11.74467 -11.40770 -11.24124 -11.19388 -10.57693 -10.45778 -10.15978 -9.17961 -8.65320 -4.88764 0.12213 0.61936 1.16657 1.34181 1.39314 1.42258 1.61773 1.68888 1.77865 2.00106 2.17423 2.92800 3.42907 3.46550 3.49888 3.58102 3.65718 3.69314 3.76722 3.81895 3.85727 3.90409 4.02440 4.13321 4.20081 4.24347 4.26712 4.28065 4.39902 4.47662 4.48730 4.57482 4.58876 4.67428 4.70433 4.73374 4.77135 4.78657 4.84707 4.88373 5.01254 5.08552 5.11914 5.18536 5.40787 5.48942 5.56209 5.64511 5.71868 5.73789 6.17417 6.20877 6.43839 6.54337 6.69992 7.10091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.541 6.541 5 C -0.102 4.102 6 C -0.094 4.094 7 H 0.097 0.903 8 C -0.118 4.118 9 C 0.112 3.888 10 H 0.082 0.918 11 N -0.695 5.695 12 C 0.492 3.508 13 O -0.573 6.573 14 C 0.087 3.913 15 N -0.466 5.466 16 C 0.075 3.925 17 C -0.215 4.215 18 C -0.057 4.057 19 O -0.556 6.556 20 Si 0.787 3.213 21 C -0.115 4.115 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.108 4.108 25 C -0.136 4.136 26 C 0.091 3.909 27 C -0.152 4.152 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.419 0.581 36 H 0.141 0.859 37 H 0.168 0.832 38 H 0.199 0.801 39 H 0.110 0.890 40 H 0.381 0.619 41 H -0.272 1.272 42 H -0.304 1.304 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.128 0.872 47 H 0.094 0.906 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -5.370 9.525 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.300 3.700 4 O -0.431 6.431 5 C -0.139 4.139 6 C -0.112 4.112 7 H 0.115 0.885 8 C -0.155 4.155 9 C 0.006 3.994 10 H 0.100 0.900 11 N -0.348 5.348 12 C 0.278 3.722 13 O -0.451 6.451 14 C -0.037 4.037 15 N -0.148 5.148 16 C -0.050 4.050 17 C -0.222 4.222 18 C -0.165 4.165 19 O -0.363 6.363 20 Si 0.691 3.309 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.172 4.172 24 C -0.127 4.127 25 C -0.156 4.156 26 C -0.015 4.015 27 C -0.190 4.190 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.257 0.743 36 H 0.159 0.841 37 H 0.186 0.814 38 H 0.215 0.785 39 H 0.128 0.872 40 H 0.230 0.770 41 H -0.199 1.199 42 H -0.232 1.232 43 H 0.139 0.861 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.146 0.854 47 H 0.113 0.887 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.009 -4.981 9.061 10.389 hybrid contribution -0.518 -0.721 -1.191 1.486 sum -1.527 -5.702 7.870 9.837 Atomic orbital electron populations 1.23466 0.75337 1.05420 1.02253 1.86515 1.24591 1.33670 1.83804 1.24572 0.93606 0.80811 0.71033 1.90668 1.68304 1.37355 1.46812 1.21597 0.85039 0.99226 1.08072 1.22438 0.97148 0.94068 0.97586 0.88512 1.23333 0.94672 0.97582 0.99962 1.21834 0.97773 0.82450 0.97304 0.90015 1.45517 1.61840 1.04320 1.23127 1.21507 0.77815 0.87457 0.85423 1.90797 1.43955 1.87768 1.22571 1.21992 1.05741 0.81916 0.94050 1.43436 1.13545 1.31719 1.26118 1.22035 0.88053 0.94404 1.00532 1.20714 0.96562 1.04804 1.00148 1.24740 0.94883 0.98605 0.98240 1.86551 1.74074 1.35797 1.39923 0.94165 0.77254 0.78701 0.80805 1.19348 0.95047 0.99198 0.98300 1.20461 0.96020 0.99140 0.94891 1.20915 0.94550 1.00034 1.01744 1.21117 1.00599 0.95782 0.95198 1.20225 0.93386 1.02751 0.99277 1.18394 0.94576 0.97004 0.91482 1.23542 0.97704 1.00035 0.97752 0.85568 0.92020 0.92434 0.84703 0.85732 0.88590 0.86695 0.74275 0.84097 0.81443 0.78466 0.87221 0.77021 1.19857 1.23160 0.86135 0.84507 0.83879 0.85403 0.88716 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.37 -0.37 10.57 -51.42 -0.54 -0.92 16 3 C 0.45 0.47 7.96 71.23 0.57 1.04 16 4 O -0.54 -4.09 15.51 21.94 0.34 -3.75 16 5 C -0.10 0.74 5.65 29.85 0.17 0.91 16 6 C -0.09 0.62 3.03 -10.27 -0.03 0.59 16 7 H 0.10 -0.49 7.68 -2.39 -0.02 -0.51 16 8 C -0.12 1.16 7.39 31.12 0.23 1.39 16 9 C 0.11 -0.37 4.32 45.52 0.20 -0.17 16 10 H 0.08 0.17 7.47 -2.39 -0.02 0.15 16 11 N -0.70 3.70 5.26 -440.02 -2.32 1.38 16 12 C 0.49 0.26 7.90 87.65 0.69 0.95 16 13 O -0.57 -7.08 16.02 -3.04 -0.05 -7.13 16 14 C 0.09 -0.52 6.48 85.63 0.55 0.04 16 15 N -0.47 -1.25 2.27 -519.99 -1.18 -2.43 16 16 C 0.08 0.14 9.89 83.00 0.82 0.96 16 17 C -0.21 -1.34 5.58 -18.63 -0.10 -1.44 16 18 C -0.06 -0.25 3.06 71.24 0.22 -0.03 16 19 O -0.56 -4.93 12.88 -148.98 -1.92 -6.85 16 20 Si 0.79 -0.78 30.82 68.60 2.11 1.34 16 21 C -0.11 -1.23 6.35 -20.20 -0.13 -1.35 16 22 C -0.09 -0.89 10.05 22.23 0.22 -0.67 16 23 C -0.15 -1.18 9.97 22.03 0.22 -0.96 16 24 C -0.11 -0.70 10.01 22.29 0.22 -0.48 16 25 C -0.14 -0.97 10.00 22.37 0.22 -0.75 16 26 C 0.09 0.77 6.80 39.03 0.27 1.04 16 27 C -0.15 0.31 7.43 31.12 0.23 0.55 16 28 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 30 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 31 H 0.14 -1.60 8.14 -2.39 -0.02 -1.62 16 32 H 0.12 -1.24 7.84 -2.38 -0.02 -1.26 16 33 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.11 -1.38 8.10 -2.38 -0.02 -1.40 16 35 H 0.42 -5.05 8.70 -92.71 -0.81 -5.86 16 36 H 0.14 -1.44 8.14 -2.39 -0.02 -1.45 16 37 H 0.17 -2.49 8.12 -2.39 -0.02 -2.51 16 38 H 0.20 -1.04 6.27 -2.91 -0.02 -1.05 16 39 H 0.11 0.45 7.96 -2.39 -0.02 0.43 16 40 H 0.38 1.48 8.70 -74.06 -0.64 0.83 16 41 H -0.27 -0.24 7.00 99.48 0.70 0.46 16 42 H -0.30 -2.07 7.11 99.48 0.71 -1.36 16 43 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 44 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 46 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.09 -0.27 7.90 -2.39 -0.02 -0.29 16 48 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -32.94 407.77 1.79 -31.15 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: -0.43 Total: -15.54 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.77 Total: 2.74 kcal Atomic # 7 Polarization: 2.45 SS G_CDS: -3.50 Total: -1.04 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -2.17 Total: -18.64 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.11 Total: 1.34 kcal Total: -32.94 1.79 -31.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16627170_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.994 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds