Wall clock time and date at job start Sun Mar 7 2021 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35653 * 116.99908 * 2 1 4 4 C 1.38405 * 120.12219 * 359.97438 * 3 2 1 5 5 C 1.38726 * 120.03384 * 180.02562 * 4 3 2 6 6 O 1.35712 * 119.86471 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00124 * 0.02562 * 6 5 4 8 8 C 1.39143 * 120.27035 * 359.97438 * 5 4 3 9 9 C 1.50709 * 119.87730 * 180.02562 * 8 5 4 10 10 O 1.42897 * 109.47142 * 284.99744 * 9 8 5 11 11 Si 1.86302 * 109.46893 * 164.99720 * 9 8 5 12 12 C 1.37587 * 120.24497 * 359.74110 * 8 5 4 13 13 C 1.39817 * 119.95835 * 0.51342 * 12 8 5 14 14 C 1.47301 * 120.13609 * 179.76550 * 13 12 8 15 15 O 1.21612 * 120.00505 * 179.72441 * 14 13 12 16 16 N 1.34780 * 119.99771 * 359.72664 * 14 13 12 17 17 C 1.46492 * 120.00132 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47152 * 34.99769 * 17 16 14 19 19 C 1.53006 * 109.47363 * 154.99846 * 17 16 14 20 20 C 1.52997 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47415 * 300.00027 * 20 19 17 22 22 H 1.08996 * 109.46550 * 300.00288 * 21 20 19 23 23 C 1.47194 * 109.47253 * 180.02562 * 21 20 19 24 24 N 9.57544 * 98.18891 * 354.90316 * 12 1 2 25 25 C 1.52996 * 109.46972 * 59.99860 * 21 20 19 26 26 C 1.52997 * 109.47165 * 300.00293 * 25 21 20 27 27 H 1.09004 * 109.47305 * 299.99982 * 1 2 3 28 28 H 1.08997 * 109.46783 * 59.99879 * 1 2 3 29 29 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.98267 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.46949 * 299.99917 * 7 6 5 32 32 H 1.08997 * 109.47240 * 59.99670 * 7 6 5 33 33 H 1.09001 * 109.47462 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.46941 * 45.00093 * 9 8 5 35 35 H 0.96697 * 114.00099 * 300.00065 * 10 9 8 36 36 H 1.48502 * 109.99807 * 179.97438 * 11 9 8 37 37 H 1.48498 * 110.00090 * 301.31989 * 11 9 8 38 38 H 1.07994 * 120.01855 * 180.25807 * 12 8 5 39 39 H 0.97006 * 119.99905 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.46998 * 299.99569 * 19 17 16 41 41 H 1.09000 * 109.47050 * 59.99860 * 19 17 16 42 42 H 1.09000 * 109.47140 * 60.00051 * 20 19 17 43 43 H 1.09001 * 109.47230 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47054 * 60.00300 * 25 21 20 45 45 H 1.09001 * 109.46997 * 180.02562 * 25 21 20 46 46 H 1.09000 * 109.47140 * 299.99954 * 26 25 21 47 47 H 1.09002 * 109.47045 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2935 2.3710 -0.0005 5 6 1.9252 3.6061 -0.0011 6 8 1.1851 4.7437 -0.0021 7 6 -0.2359 4.5932 -0.0021 8 6 3.3145 3.6834 -0.0005 9 6 3.9915 5.0298 -0.0005 10 8 3.8945 5.6118 -1.3021 11 14 5.7861 4.8225 0.4549 12 6 4.0724 2.5351 0.0059 13 6 3.4461 1.2851 0.0011 14 6 4.2538 0.0533 0.0027 15 8 3.7066 -1.0328 0.0036 16 7 5.5994 0.1298 0.0033 17 6 6.4028 -1.0953 0.0044 18 1 5.8983 -1.8611 -0.5848 19 6 7.7760 -0.8052 -0.6048 20 6 8.6152 -2.0845 -0.6031 21 6 8.7891 -2.5786 0.8345 22 1 9.2933 -1.8124 1.4234 23 6 9.5969 -3.8090 0.8362 24 7 10.2193 -4.7604 0.8309 25 6 7.4159 -2.8686 1.4437 26 6 6.5767 -1.5893 1.4419 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2149 2.3165 -0.0014 31 1 -0.5430 4.0431 -0.8916 32 1 -0.5431 4.0447 0.8883 33 1 -0.7055 5.5768 -0.0025 34 1 3.5052 5.6810 0.7258 35 1 4.3071 5.0850 -2.0002 36 1 6.4652 6.1432 0.4579 37 1 5.9006 4.1890 1.7931 38 1 5.1505 2.5994 0.0105 39 1 6.0360 0.9960 0.0023 40 1 7.6522 -0.4530 -1.6289 41 1 8.2805 -0.0394 -0.0156 42 1 8.1109 -2.8506 -1.1920 43 1 9.5934 -1.8780 -1.0375 44 1 6.9116 -3.6347 0.8547 45 1 7.5397 -3.2201 2.4680 46 1 7.0810 -0.8232 2.0309 47 1 5.5986 -1.7958 1.8763 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:57:50 Heat of formation + Delta-G solvation = -89.932242 kcal Electronic energy + Delta-G solvation = -31010.731404 eV Core-core repulsion = 26739.859024 eV Total energy + Delta-G solvation = -4270.872380 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06279 -40.83419 -40.04403 -39.28901 -38.40004 -37.25194 -36.91849 -35.06310 -32.24252 -32.09761 -31.71646 -30.35873 -28.97100 -28.10519 -26.08656 -25.12598 -23.81617 -23.66715 -22.57012 -21.37445 -21.03170 -19.98652 -18.76125 -18.63213 -18.16423 -17.90191 -17.20616 -17.08083 -16.59482 -16.44660 -16.26988 -15.99333 -15.76081 -15.59136 -15.49981 -15.25608 -15.24076 -14.74726 -14.61745 -14.41753 -14.15122 -14.01320 -13.83012 -13.58870 -13.50094 -13.20764 -13.14440 -12.92756 -12.64886 -12.52793 -12.50184 -12.23324 -12.18427 -12.05826 -11.98769 -11.92994 -11.61256 -11.33663 -11.16006 -10.77613 -10.33003 -9.97630 -9.86030 -9.14119 -4.99261 -0.20304 0.12618 1.36657 1.71902 1.78249 1.81797 1.83666 2.07607 2.14809 2.18539 2.24360 2.68640 3.00101 3.49831 3.57005 3.69059 3.77788 3.79090 3.83592 3.90594 4.10844 4.15384 4.20488 4.26569 4.26821 4.28255 4.29229 4.31128 4.34473 4.49430 4.51143 4.56553 4.61710 4.64308 4.66771 4.79066 4.80554 4.95106 4.97261 5.06493 5.16370 5.20962 5.28194 5.29731 5.34886 5.46052 5.49281 5.69200 6.05804 6.32055 6.62134 6.70247 6.89951 7.40468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.303 6.303 3 C 0.214 3.786 4 C -0.314 4.314 5 C 0.209 3.791 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.205 4.205 9 C -0.066 4.066 10 O -0.555 6.555 11 Si 0.783 3.217 12 C 0.012 3.988 13 C -0.224 4.224 14 C 0.564 3.436 15 O -0.565 6.565 16 N -0.712 5.712 17 C 0.142 3.858 18 H 0.066 0.934 19 C -0.116 4.116 20 C -0.106 4.106 21 C 0.012 3.988 22 H 0.151 0.849 23 C 0.237 3.763 24 N -0.506 5.506 25 C -0.106 4.106 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.393 0.607 36 H -0.299 1.299 37 H -0.270 1.270 38 H 0.174 0.826 39 H 0.414 0.586 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 6.434 -1.387 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.214 6.214 3 C 0.165 3.835 4 C -0.333 4.333 5 C 0.161 3.839 6 O -0.227 6.227 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.175 4.175 10 O -0.363 6.363 11 Si 0.686 3.314 12 C -0.006 4.006 13 C -0.228 4.228 14 C 0.353 3.647 15 O -0.444 6.444 16 N -0.365 5.365 17 C 0.037 3.963 18 H 0.084 0.916 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.009 4.009 22 H 0.169 0.831 23 C -0.080 4.080 24 N -0.183 5.183 25 C -0.145 4.145 26 C -0.161 4.161 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.176 0.824 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.243 0.757 36 H -0.227 1.227 37 H -0.196 1.196 38 H 0.191 0.809 39 H 0.252 0.748 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.289 4.873 -0.511 4.908 hybrid contribution -1.744 0.503 0.314 1.842 sum -2.034 5.376 -0.198 5.751 Atomic orbital electron populations 1.23441 0.76759 1.05643 1.02480 1.86363 1.22966 1.25937 1.86089 1.19030 0.91395 0.84509 0.88572 1.21405 1.01902 0.90948 1.19040 1.18993 0.91164 0.84795 0.88965 1.86138 1.20984 1.28951 1.86630 1.23435 0.76429 1.05714 1.02525 1.19643 0.90757 0.96953 1.13230 1.25160 1.11850 0.91562 0.88899 1.86510 1.82714 1.50244 1.16855 0.94286 0.72966 0.81470 0.82659 1.20890 0.99897 0.88454 0.91359 1.19218 0.90606 0.94199 1.18793 1.17972 0.82866 0.88023 0.75887 1.90829 1.72484 1.30268 1.50845 1.45793 1.04705 1.10715 1.75253 1.21082 0.92151 0.86478 0.96564 0.91582 1.21790 0.92160 0.98080 1.03335 1.21519 1.02078 0.97927 0.93051 1.19286 0.93038 0.87666 1.00882 0.83131 1.29976 0.92394 0.94469 0.91182 1.81342 1.12481 1.13727 1.10740 1.21469 0.92934 0.98357 1.01781 1.21858 0.99723 0.97483 0.97055 0.91289 0.91151 0.86962 0.82397 0.91308 0.91364 0.86447 0.88792 0.75734 1.22703 1.19567 0.80945 0.74762 0.89093 0.87397 0.91818 0.88871 0.92164 0.90472 0.88670 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.13 8.56 -68.72 -0.59 -2.72 16 3 C 0.21 0.96 6.70 22.82 0.15 1.11 16 4 C -0.31 -0.30 8.01 22.43 0.18 -0.12 16 5 C 0.21 0.38 6.67 22.60 0.15 0.53 16 6 O -0.32 -0.73 9.80 -90.33 -0.89 -1.62 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.21 5.27 -19.80 -0.10 0.10 16 9 C -0.07 0.11 2.37 71.24 0.17 0.28 16 10 O -0.56 0.24 12.88 -148.98 -1.92 -1.68 16 11 Si 0.78 -5.23 29.90 68.60 2.05 -3.18 16 12 C 0.01 -0.05 8.14 22.50 0.18 0.13 16 13 C -0.22 -0.43 5.89 -20.00 -0.12 -0.55 16 14 C 0.56 2.08 7.72 86.63 0.67 2.75 16 15 O -0.56 -7.37 14.81 16.89 0.25 -7.12 16 16 N -0.71 3.98 5.03 -445.93 -2.24 1.74 16 17 C 0.14 -0.87 2.46 44.99 0.11 -0.76 16 18 H 0.07 0.00 7.58 -2.39 -0.02 -0.01 16 19 C -0.12 1.52 5.39 30.60 0.16 1.69 16 20 C -0.11 1.11 5.16 30.59 0.16 1.27 16 21 C 0.01 -0.11 2.56 -12.60 -0.03 -0.14 16 22 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 23 C 0.24 0.30 14.65 89.43 1.31 1.61 16 24 N -0.51 -5.12 18.54 20.01 0.37 -4.75 16 25 C -0.11 0.63 5.16 30.59 0.16 0.79 16 26 C -0.12 0.72 5.49 30.59 0.17 0.89 16 27 H 0.07 -0.32 7.66 -2.38 -0.02 -0.34 16 28 H 0.07 -0.34 7.66 -2.39 -0.02 -0.35 16 29 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.16 -0.53 4.50 -2.91 -0.01 -0.54 16 31 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 32 H 0.07 -0.47 7.65 -2.39 -0.02 -0.49 16 33 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.09 0.18 7.82 -2.39 -0.02 0.16 16 35 H 0.39 -3.72 8.70 -74.06 -0.64 -4.37 16 36 H -0.30 -0.48 7.11 99.48 0.71 0.22 16 37 H -0.27 0.93 7.11 99.48 0.71 1.64 16 38 H 0.17 -2.21 3.42 -2.91 -0.01 -2.22 16 39 H 0.41 -5.49 6.62 -92.70 -0.61 -6.11 16 40 H 0.09 -1.27 8.14 -2.39 -0.02 -1.29 16 41 H 0.11 -1.98 8.14 -2.39 -0.02 -2.00 16 42 H 0.06 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -32.95 383.78 2.39 -30.56 By element: Atomic # 1 Polarization: -22.73 SS G_CDS: -0.19 Total: -22.93 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.54 Total: 11.71 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -1.87 Total: -3.02 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -3.14 Total: -13.14 kcal Atomic # 14 Polarization: -5.23 SS G_CDS: 2.05 Total: -3.18 kcal Total: -32.95 2.39 -30.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.376 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds