Wall clock time and date at job start Sun Mar 7 2021 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46506 * 155.48528 * 3 2 1 5 5 C 1.52996 * 109.46863 * 275.48309 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46817 * 299.99733 * 6 5 3 8 8 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 9 9 N 1.46500 * 109.47007 * 180.02562 * 7 6 5 10 10 C 1.34773 * 120.00050 * 85.00124 * 9 7 6 11 11 O 1.21272 * 120.00064 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47291 * 179.97438 * 12 10 9 14 14 C 1.35043 * 125.92993 * 124.99869 * 13 12 10 15 15 C 1.35087 * 107.97872 * 180.02562 * 14 13 12 16 16 C 1.50690 * 126.07718 * 180.02562 * 15 14 13 17 17 O 1.42904 * 109.47202 * 254.97518 * 16 15 14 18 18 Si 1.86304 * 109.47068 * 14.97239 * 16 15 14 19 19 C 1.40846 * 107.84561 * 359.97438 * 15 14 13 20 20 C 1.48425 * 126.03661 * 180.02562 * 19 15 14 21 21 C 1.39329 * 120.11559 * 324.72724 * 20 19 15 22 22 C 1.38027 * 119.87300 * 179.76782 * 21 20 19 23 23 C 1.38315 * 120.12190 * 0.48405 * 22 21 20 24 24 C 1.38322 * 120.24391 * 359.78799 * 23 22 21 25 25 C 1.38027 * 120.11466 * 359.95535 * 24 23 22 26 26 N 1.31615 * 107.92755 * 359.72142 * 19 15 14 27 27 C 1.53006 * 109.47127 * 60.00361 * 7 6 5 28 28 C 1.52997 * 109.47240 * 35.48234 * 3 2 1 29 29 H 1.08996 * 109.47452 * 59.99991 * 5 3 2 30 30 H 1.09000 * 109.47054 * 300.00151 * 5 3 2 31 31 H 1.09002 * 109.47070 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47407 * 59.99513 * 6 5 3 33 33 H 0.97002 * 120.00030 * 265.00025 * 9 7 6 34 34 H 1.08999 * 109.47446 * 299.99957 * 12 10 9 35 35 H 1.08996 * 109.47464 * 59.99678 * 12 10 9 36 36 H 1.08000 * 126.01199 * 0.02562 * 14 13 12 37 37 H 1.08998 * 109.47741 * 134.97040 * 16 15 14 38 38 H 0.96695 * 114.00422 * 60.00029 * 17 16 15 39 39 H 1.48494 * 109.99977 * 58.68215 * 18 16 15 40 40 H 1.48507 * 110.00008 * 180.02562 * 18 16 15 41 41 H 1.07997 * 120.06151 * 359.97438 * 21 20 19 42 42 H 1.07997 * 119.93449 * 180.27138 * 22 21 20 43 43 H 1.08003 * 119.88263 * 179.76581 * 23 22 21 44 44 H 1.07999 * 119.94500 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.05563 * 180.02562 * 25 24 23 46 46 H 1.08993 * 109.46955 * 60.00011 * 27 7 6 47 47 H 1.09000 * 109.47050 * 179.97438 * 27 7 6 48 48 H 1.09002 * 109.47153 * 60.00105 * 28 3 2 49 49 H 1.08993 * 109.47194 * 300.00393 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 1 2.9709 0.9359 -0.4264 5 6 3.1181 -0.1369 1.4359 6 6 4.6481 -0.1356 1.4360 7 6 5.1591 -1.3097 0.5986 8 1 4.7964 -2.2451 1.0248 9 7 6.6241 -1.3088 0.5991 10 6 7.2979 -1.9008 1.6051 11 8 6.6915 -2.4346 2.5095 12 6 8.8049 -1.9004 1.6053 13 7 9.2933 -2.6005 2.7960 14 6 10.1490 -3.6451 2.8058 15 6 10.3517 -4.0060 4.0917 16 6 11.2374 -5.1276 4.5695 17 8 10.4283 -6.2323 4.9782 18 14 12.3642 -5.6618 3.1854 19 6 9.5890 -3.1468 4.9065 20 6 9.5151 -3.1864 6.3884 21 6 9.5660 -4.4068 7.0585 22 6 9.5016 -4.4375 8.4369 23 6 9.3767 -3.2603 9.1523 24 6 9.3200 -2.0463 8.4918 25 6 9.3888 -2.0037 7.1139 26 7 8.9587 -2.2984 4.1222 27 6 4.6490 -1.1721 -0.8374 28 6 3.1186 -1.1737 -0.8373 29 1 2.7552 -1.0721 1.8624 30 1 2.7543 0.6997 2.0324 31 1 5.0114 -0.2332 2.4590 32 1 5.0107 0.7997 1.0096 33 1 7.1091 -0.8822 -0.1245 34 1 9.1686 -2.4065 0.7111 35 1 9.1680 -0.8727 1.6140 36 1 10.5932 -4.1102 1.9382 37 1 11.8359 -4.7839 5.4131 38 1 9.8680 -6.5905 4.2763 39 1 13.1885 -4.5137 2.7298 40 1 13.2425 -6.7681 3.6437 41 1 9.6590 -5.3269 6.5006 42 1 9.5454 -5.3826 8.9576 43 1 9.3228 -3.2891 10.2306 44 1 9.2220 -1.1301 9.0552 45 1 9.3449 -1.0552 6.5991 46 1 5.0117 -0.2368 -1.2637 47 1 5.0135 -2.0083 -1.4341 48 1 2.7553 -1.0757 -1.8603 49 1 2.7557 -2.1088 -0.4109 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:58:56 Heat of formation + Delta-G solvation = 62.300534 kcal Electronic energy + Delta-G solvation = -32214.596059 eV Core-core repulsion = 27916.621509 eV Total energy + Delta-G solvation = -4297.974550 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.44141 -41.03430 -39.84396 -39.45430 -37.72283 -37.34485 -35.17945 -34.70706 -32.35849 -31.93893 -31.81415 -31.48412 -30.84313 -28.49664 -25.96879 -24.72570 -23.77954 -23.72428 -23.46051 -21.68860 -21.41690 -21.21500 -20.79836 -18.75937 -18.70010 -18.25123 -17.73559 -17.43193 -16.74173 -16.70864 -16.32950 -16.06934 -15.83828 -15.67469 -15.38369 -15.35900 -15.31192 -14.82420 -14.71719 -14.57082 -14.39493 -14.21128 -14.09811 -13.96524 -13.86687 -13.70368 -13.62922 -13.29910 -13.24453 -12.97970 -12.44725 -12.36306 -12.30653 -12.16249 -12.12224 -12.09475 -11.87376 -11.52298 -11.44047 -11.28001 -11.16158 -10.59282 -10.22434 -10.02522 -9.87886 -9.71440 -9.25548 -4.95067 0.07742 0.46987 0.88620 1.35003 1.47187 1.59962 1.68497 1.71708 1.75469 1.82011 2.08701 2.18534 2.90312 2.92150 3.40887 3.61020 3.64875 3.71305 3.74058 3.78353 4.01072 4.02575 4.04032 4.12452 4.18440 4.20512 4.23659 4.25519 4.35222 4.39574 4.42484 4.46474 4.50995 4.53502 4.63849 4.70886 4.82800 4.86542 4.86889 5.01203 5.04766 5.11310 5.17987 5.18165 5.19614 5.33100 5.34765 5.38738 5.56602 5.57946 5.62225 5.65469 5.99550 6.05912 6.55155 6.59919 6.65196 6.89283 7.30469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.235 3.765 3 C 0.014 3.986 4 H 0.151 0.849 5 C -0.108 4.108 6 C -0.120 4.120 7 C 0.144 3.856 8 H 0.060 0.940 9 N -0.706 5.706 10 C 0.495 3.505 11 O -0.566 6.566 12 C 0.107 3.893 13 N -0.358 5.358 14 C 0.080 3.920 15 C -0.271 4.271 16 C -0.042 4.042 17 O -0.555 6.555 18 Si 0.805 3.195 19 C 0.106 3.894 20 C -0.039 4.039 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.112 4.112 26 N -0.295 5.295 27 C -0.111 4.111 28 C -0.108 4.108 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.423 0.577 34 H 0.183 0.817 35 H 0.139 0.861 36 H 0.230 0.770 37 H 0.089 0.911 38 H 0.393 0.607 39 H -0.280 1.280 40 H -0.304 1.304 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 1.098 -10.684 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.082 4.082 3 C -0.007 4.007 4 H 0.169 0.831 5 C -0.147 4.147 6 C -0.159 4.159 7 C 0.039 3.961 8 H 0.078 0.922 9 N -0.360 5.360 10 C 0.281 3.719 11 O -0.443 6.443 12 C -0.016 4.016 13 N -0.140 5.140 14 C -0.065 4.065 15 C -0.283 4.283 16 C -0.152 4.152 17 O -0.363 6.363 18 Si 0.710 3.290 19 C -0.059 4.059 20 C -0.041 4.041 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.132 4.132 26 N -0.117 5.117 27 C -0.148 4.148 28 C -0.147 4.147 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.261 0.739 34 H 0.201 0.799 35 H 0.157 0.843 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.243 0.757 39 H -0.206 1.206 40 H -0.232 1.232 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.029 1.833 -10.003 11.345 hybrid contribution 0.488 0.044 1.019 1.130 sum 5.518 1.877 -8.985 10.709 Atomic orbital electron populations 1.81310 1.15353 1.10889 1.10468 1.29933 0.95742 0.91204 0.91324 1.19266 0.78562 1.04344 0.98545 0.83139 1.21474 0.95876 1.02978 0.94376 1.21823 0.94055 0.99945 1.00063 1.20999 0.79234 0.98423 0.97448 0.92168 1.45787 1.07031 1.57676 1.25525 1.21042 0.90691 0.78175 0.82028 1.90838 1.70650 1.45826 1.37005 1.22051 0.91084 1.02361 0.86130 1.48171 1.35019 1.25947 1.04840 1.22899 0.93940 0.90350 0.99359 1.20641 1.09678 1.05332 0.92609 1.24619 0.97579 0.85301 1.07666 1.86330 1.59993 1.47371 1.42622 0.94009 0.77532 0.77066 0.80434 1.20828 0.96725 0.95203 0.93170 1.18098 1.02916 0.94330 0.88716 1.22076 0.97415 0.98446 0.95256 1.21436 1.00262 0.99397 0.93898 1.21591 0.98561 0.92305 1.01254 1.21348 1.00615 0.99239 0.93826 1.21321 0.99554 0.97470 0.94807 1.77670 1.22278 1.23845 0.87878 1.21736 0.93859 1.05548 0.93699 1.21539 0.96060 0.96377 1.00745 0.92454 0.90615 0.93855 0.88607 0.73870 0.79948 0.84344 0.75391 0.89345 0.75665 1.20650 1.23182 0.82541 0.84060 0.83759 0.84114 0.86533 0.87628 0.89223 0.88859 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.18 18.54 20.01 0.37 -4.81 16 2 C 0.23 0.34 14.65 89.44 1.31 1.65 16 3 C 0.01 -0.12 2.56 -12.60 -0.03 -0.15 16 4 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 5 C -0.11 0.59 5.16 30.59 0.16 0.75 16 6 C -0.12 0.76 5.49 30.59 0.17 0.93 16 7 C 0.14 -1.15 2.45 44.99 0.11 -1.04 16 8 H 0.06 -0.05 7.58 -2.39 -0.02 -0.07 16 9 N -0.71 7.60 5.08 -442.54 -2.25 5.35 16 10 C 0.50 -1.43 7.82 87.66 0.69 -0.74 16 11 O -0.57 -5.92 15.38 -3.01 -0.05 -5.97 16 12 C 0.11 -1.03 6.98 85.63 0.60 -0.44 16 13 N -0.36 -0.23 3.39 -351.91 -1.19 -1.43 16 14 C 0.08 -0.26 9.96 83.47 0.83 0.57 16 15 C -0.27 -0.87 5.34 -19.96 -0.11 -0.98 16 16 C -0.04 -0.04 2.00 71.23 0.14 0.11 16 17 O -0.55 -0.48 10.10 -148.98 -1.51 -1.99 16 18 Si 0.81 -3.76 30.74 68.60 2.11 -1.66 16 19 C 0.11 1.12 6.74 42.53 0.29 1.41 16 20 C -0.04 -0.46 5.80 -20.04 -0.12 -0.58 16 21 C -0.11 -1.13 8.94 22.48 0.20 -0.92 16 22 C -0.13 -0.94 10.03 22.24 0.22 -0.72 16 23 C -0.12 -0.70 10.04 22.31 0.22 -0.48 16 24 C -0.13 -0.97 10.04 22.24 0.22 -0.75 16 25 C -0.11 -1.23 9.75 22.48 0.22 -1.01 16 26 N -0.30 -3.23 11.65 -48.16 -0.56 -3.79 16 27 C -0.11 1.59 5.39 30.61 0.17 1.76 16 28 C -0.11 1.16 5.16 30.61 0.16 1.32 16 29 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.42 -8.15 8.60 -92.71 -0.80 -8.95 16 34 H 0.18 -3.81 8.07 -2.39 -0.02 -3.83 16 35 H 0.14 -1.91 8.14 -2.39 -0.02 -1.93 16 36 H 0.23 -3.39 6.40 -2.91 -0.02 -3.41 16 37 H 0.09 0.43 7.84 -2.39 -0.02 0.42 16 38 H 0.39 -2.74 8.70 -74.06 -0.64 -3.39 16 39 H -0.28 0.19 7.11 99.48 0.71 0.90 16 40 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 41 H 0.16 1.39 4.53 -2.91 -0.01 1.38 16 42 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 44 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 45 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.11 -2.03 8.14 -2.39 -0.02 -2.05 16 47 H 0.09 -1.37 8.14 -2.39 -0.02 -1.39 16 48 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 49 H 0.06 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -41.65 408.79 1.97 -39.68 By element: Atomic # 1 Polarization: -25.66 SS G_CDS: -0.40 Total: -26.07 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.45 Total: 0.68 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: -3.63 Total: -4.67 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.55 Total: -7.96 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.11 Total: -1.66 kcal Total: -41.65 1.97 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.976 kcal (2) G-P(sol) polarization free energy of solvation -41.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds