Wall clock time and date at job start Sun Mar 7 2021 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46790 * 190.69611 * 3 2 1 5 5 C 1.52999 * 109.47278 * 310.69400 * 3 2 1 6 6 C 1.52997 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47410 * 299.99869 * 6 5 3 8 8 H 1.08995 * 109.47538 * 300.00489 * 7 6 5 9 9 N 1.46499 * 109.47403 * 180.02562 * 7 6 5 10 10 C 1.34771 * 120.00143 * 85.00114 * 9 7 6 11 11 O 1.21620 * 119.99874 * 0.02562 * 10 9 7 12 12 C 1.47294 * 119.99999 * 180.02562 * 10 9 7 13 13 C 1.39873 * 120.04804 * 359.97438 * 12 10 9 14 14 C 1.36426 * 120.18588 * 180.02562 * 13 12 10 15 15 C 1.39922 * 120.27871 * 0.02562 * 14 13 12 16 16 C 1.47569 * 119.95349 * 179.97438 * 15 14 13 17 17 C 1.36109 * 125.94731 * 359.97438 * 16 15 14 18 18 C 1.40795 * 106.73337 * 180.25127 * 17 16 15 19 19 C 1.34832 * 107.04954 * 359.62775 * 18 17 16 20 20 C 1.50702 * 125.65062 * 180.09766 * 19 18 17 21 21 O 1.42895 * 109.47468 * 65.30036 * 20 19 18 22 22 Si 1.86304 * 109.47179 * 185.29811 * 20 19 18 23 23 O 1.34226 * 108.69752 * 0.37982 * 19 18 17 24 24 C 1.39605 * 120.09206 * 0.24522 * 15 14 13 25 25 C 1.38287 * 119.80735 * 359.47886 * 24 15 14 26 26 O 1.35679 * 120.13340 * 180.22641 * 25 24 15 27 27 C 1.53008 * 109.46767 * 60.00111 * 7 6 5 28 28 C 1.52997 * 109.47224 * 299.99740 * 27 7 6 29 29 H 1.08997 * 109.47388 * 300.00463 * 5 3 2 30 30 H 1.09001 * 109.47038 * 60.00363 * 5 3 2 31 31 H 1.09008 * 109.46864 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.46886 * 60.00280 * 6 5 3 33 33 H 0.97010 * 119.99936 * 265.00438 * 9 7 6 34 34 H 1.07995 * 119.90593 * 359.97438 * 13 12 10 35 35 H 1.07995 * 119.86039 * 179.97438 * 14 13 12 36 36 H 1.08002 * 126.62860 * 359.97438 * 17 16 15 37 37 H 1.08005 * 126.47533 * 179.75634 * 18 17 16 38 38 H 1.08999 * 109.47385 * 305.29667 * 20 19 18 39 39 H 0.96707 * 113.99962 * 59.99205 * 21 20 19 40 40 H 1.48499 * 110.00338 * 179.97438 * 22 20 19 41 41 H 1.48498 * 110.00104 * 301.32187 * 22 20 19 42 42 H 1.07991 * 120.09495 * 179.71070 * 24 15 14 43 43 H 0.96706 * 113.99361 * 270.32341 * 26 25 24 44 44 H 1.09000 * 109.46647 * 60.00362 * 27 7 6 45 45 H 1.08998 * 109.46744 * 179.97438 * 27 7 6 46 46 H 1.08995 * 109.47098 * 179.97438 * 28 27 7 47 47 H 1.08996 * 109.47195 * 300.00568 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9709 1.0107 0.1907 5 6 3.1185 -0.9396 1.0937 6 6 4.6484 -0.9394 1.0932 7 6 5.1582 -1.4164 -0.2682 8 1 4.7949 -2.4263 -0.4587 9 7 6.6232 -1.4168 -0.2684 10 6 7.2969 -2.4806 0.2119 11 8 6.6886 -3.4406 0.6451 12 6 8.7698 -2.4807 0.2122 13 6 9.4703 -1.3775 -0.2863 14 6 10.8346 -1.3748 -0.2879 15 6 11.5428 -2.4748 0.2082 16 6 13.0185 -2.4645 0.2025 17 6 13.8087 -1.4549 -0.2544 18 6 15.1419 -1.8702 -0.0741 19 6 15.1017 -3.0963 0.4856 20 6 16.2995 -3.9305 0.8602 21 8 17.0254 -3.2796 1.9050 22 14 15.7312 -5.6043 1.4486 23 8 13.8180 -3.4532 0.6481 24 6 10.8554 -3.5845 0.7032 25 6 9.4726 -3.5888 0.7119 26 8 8.7978 -4.6618 1.1958 27 6 4.6477 -0.4761 -1.3619 28 6 3.1177 -0.4763 -1.3615 29 1 2.7550 -0.6001 2.0636 30 1 2.7557 -1.9496 0.9029 31 1 5.0121 -1.6097 1.8722 32 1 5.0117 0.0705 1.2837 33 1 7.1083 -0.6512 -0.6142 34 1 8.9297 -0.5257 -0.6718 35 1 11.3702 -0.5203 -0.6744 36 1 13.4771 -0.5183 -0.6778 37 1 16.0291 -1.3114 -0.3330 38 1 16.9448 -4.0511 -0.0099 39 1 16.5118 -3.1390 2.7122 40 1 16.9032 -6.4369 1.8206 41 1 14.8251 -5.4518 2.6152 42 1 11.4020 -4.4355 1.0818 43 1 8.6026 -5.3362 0.5307 44 1 5.0110 0.5338 -1.1714 45 1 5.0112 -0.8157 -2.3317 46 1 2.7541 0.1939 -2.1403 47 1 2.7545 -1.4862 -1.5519 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:59:06 Heat of formation + Delta-G solvation = -41.494551 kcal Electronic energy + Delta-G solvation = -31764.447427 eV Core-core repulsion = 27266.534661 eV Total energy + Delta-G solvation = -4497.912767 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.72049 -41.60924 -40.33897 -39.15573 -38.19460 -37.84661 -37.27828 -35.20096 -34.21652 -33.44119 -31.78695 -31.40458 -30.96307 -30.06885 -27.04884 -24.98068 -24.05347 -23.79671 -23.72698 -22.37335 -21.79173 -21.28301 -21.14755 -19.69415 -18.78613 -18.68373 -18.53393 -17.67720 -17.52187 -17.40584 -16.64332 -16.37893 -16.26941 -16.04925 -15.81528 -15.50387 -15.41625 -15.30246 -14.80960 -14.66495 -14.47818 -14.42458 -14.26613 -13.96338 -13.88717 -13.78229 -13.65040 -13.56883 -13.45752 -13.22610 -13.00502 -12.95343 -12.66738 -12.27136 -12.19232 -12.13896 -12.06318 -11.82390 -11.41316 -11.23575 -11.10309 -10.83079 -10.81530 -10.59447 -10.01247 -9.90344 -8.98186 -4.99372 -0.74411 0.19318 0.67661 1.13215 1.45390 1.47662 1.71015 1.74754 1.78428 1.88925 1.99102 2.12629 2.70227 2.95014 3.06360 3.22379 3.39445 3.65954 3.67097 3.76313 3.78387 3.89706 4.02136 4.04875 4.05261 4.21684 4.26019 4.29327 4.39856 4.42487 4.44323 4.47591 4.54764 4.68397 4.71073 4.74771 4.83150 4.89472 4.92510 5.06521 5.11600 5.14829 5.15628 5.21032 5.22446 5.26331 5.37819 5.41052 5.45956 5.57199 5.61226 5.98263 6.31585 6.58084 6.59363 6.73965 7.28294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.236 3.764 3 C 0.013 3.987 4 H 0.151 0.849 5 C -0.107 4.107 6 C -0.121 4.121 7 C 0.141 3.859 8 H 0.066 0.934 9 N -0.707 5.707 10 C 0.556 3.444 11 O -0.564 6.564 12 C -0.178 4.178 13 C -0.049 4.049 14 C -0.110 4.110 15 C 0.023 3.977 16 C 0.005 3.995 17 C -0.172 4.172 18 C -0.181 4.181 19 C -0.053 4.053 20 C -0.032 4.032 21 O -0.535 6.535 22 Si 0.763 3.237 23 O -0.178 6.178 24 C -0.155 4.155 25 C 0.158 3.842 26 O -0.497 6.497 27 C -0.113 4.113 28 C -0.107 4.107 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.416 0.584 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.389 0.611 40 H -0.281 1.281 41 H -0.298 1.298 42 H 0.134 0.866 43 H 0.408 0.592 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 6.012 -6.675 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.081 4.081 3 C -0.008 4.008 4 H 0.168 0.832 5 C -0.146 4.146 6 C -0.160 4.160 7 C 0.037 3.963 8 H 0.085 0.915 9 N -0.359 5.359 10 C 0.344 3.656 11 O -0.444 6.444 12 C -0.181 4.181 13 C -0.067 4.067 14 C -0.128 4.128 15 C 0.022 3.978 16 C -0.044 4.044 17 C -0.191 4.191 18 C -0.200 4.200 19 C -0.103 4.103 20 C -0.142 4.142 21 O -0.343 6.343 22 Si 0.667 3.333 23 O -0.075 6.075 24 C -0.174 4.174 25 C 0.111 3.889 26 O -0.310 6.310 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.239 0.761 40 H -0.207 1.207 41 H -0.225 1.225 42 H 0.152 0.848 43 H 0.268 0.732 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.283 4.769 -5.516 8.457 hybrid contribution 0.504 0.301 0.802 0.994 sum 4.787 5.070 -4.715 8.417 Atomic orbital electron populations 1.81309 1.15360 1.10961 1.10466 1.29913 0.95706 0.91153 0.91310 1.19272 0.78568 1.04626 0.98330 0.83188 1.21475 0.95626 0.99233 0.98269 1.21843 0.94209 1.03017 0.96944 1.21088 0.78668 1.00652 0.95926 0.91547 1.45816 1.07303 1.19491 1.63337 1.18192 0.87108 0.82876 0.77438 1.90832 1.70375 1.35927 1.47222 1.20571 0.93306 0.97912 1.06359 1.21209 0.93915 0.96721 0.94872 1.21074 0.94060 0.97826 0.99804 1.17966 0.86823 0.94933 0.98049 1.20631 0.90337 0.88661 1.04774 1.22248 0.91923 1.00943 1.03980 1.21842 0.99015 0.95810 1.03330 1.23138 0.83201 0.98228 1.05730 1.24449 0.90465 1.03585 0.95707 1.86638 1.41348 1.80032 1.26272 0.93669 0.78356 0.75702 0.85551 1.83937 1.16484 1.41503 1.65624 1.21564 0.93223 1.00050 1.02564 1.18523 0.89356 0.88429 0.92572 1.84735 1.76322 1.30939 1.38990 1.21745 0.94135 1.00938 0.98263 1.21519 0.95758 1.02756 0.94581 0.90389 0.92106 0.93368 0.88693 0.74502 0.80528 0.81279 0.79942 0.81566 0.82490 0.76075 1.20743 1.22503 0.84786 0.73198 0.87687 0.89478 0.88906 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.02 18.54 20.01 0.37 -4.65 16 2 C 0.24 0.26 14.65 89.44 1.31 1.57 16 3 C 0.01 -0.11 2.57 -12.60 -0.03 -0.15 16 4 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 5 C -0.11 0.65 5.16 30.59 0.16 0.81 16 6 C -0.12 0.76 5.49 30.59 0.17 0.92 16 7 C 0.14 -0.95 2.45 44.99 0.11 -0.84 16 8 H 0.07 -0.05 7.57 -2.39 -0.02 -0.06 16 9 N -0.71 4.90 5.03 -445.94 -2.24 2.66 16 10 C 0.56 0.99 7.72 86.63 0.67 1.66 16 11 O -0.56 -6.22 14.80 16.90 0.25 -5.97 16 12 C -0.18 0.08 5.89 -19.97 -0.12 -0.03 16 13 C -0.05 0.40 9.47 22.24 0.21 0.61 16 14 C -0.11 0.80 9.48 22.25 0.21 1.01 16 15 C 0.02 -0.02 5.87 -20.08 -0.12 -0.14 16 16 C 0.01 0.00 7.02 24.24 0.17 0.17 16 17 C -0.17 0.50 10.26 22.40 0.23 0.73 16 18 C -0.18 0.25 10.78 22.11 0.24 0.49 16 19 C -0.05 0.00 6.21 24.90 0.15 0.15 16 20 C -0.03 0.07 2.98 71.24 0.21 0.28 16 21 O -0.53 -0.18 12.88 -148.98 -1.92 -2.10 16 22 Si 0.76 -0.80 32.11 68.60 2.20 1.40 16 23 O -0.18 -0.44 8.79 -6.02 -0.05 -0.49 16 24 C -0.16 -0.32 9.65 22.61 0.22 -0.10 16 25 C 0.16 0.56 6.71 22.81 0.15 0.71 16 26 O -0.50 -3.22 11.56 -68.98 -0.80 -4.02 16 27 C -0.11 1.50 5.39 30.60 0.17 1.66 16 28 C -0.11 1.13 5.16 30.59 0.16 1.28 16 29 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.42 -6.02 6.61 -92.70 -0.61 -6.64 16 34 H 0.18 -3.01 6.37 -2.91 -0.02 -3.03 16 35 H 0.17 -2.29 6.95 -2.91 -0.02 -2.31 16 36 H 0.18 -1.71 7.24 -2.91 -0.02 -1.73 16 37 H 0.17 -0.69 8.06 -2.91 -0.02 -0.71 16 38 H 0.16 -0.98 7.96 -2.39 -0.02 -1.00 16 39 H 0.39 -1.68 8.70 -74.05 -0.64 -2.33 16 40 H -0.28 -1.22 7.11 99.48 0.71 -0.52 16 41 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 42 H 0.13 0.35 7.90 -2.92 -0.02 0.32 16 43 H 0.41 -0.26 9.06 -74.05 -0.67 -0.94 16 44 H 0.10 -1.90 8.14 -2.39 -0.02 -1.92 16 45 H 0.09 -1.19 8.14 -2.39 -0.02 -1.20 16 46 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 47 H 0.06 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -32.28 400.53 1.25 -31.03 By element: Atomic # 1 Polarization: -27.83 SS G_CDS: -0.83 Total: -28.67 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 4.27 Total: 10.80 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -1.87 Total: -1.99 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -2.52 Total: -12.57 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.20 Total: 1.40 kcal Total: -32.28 1.25 -31.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.465 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds