Wall clock time and date at job start Sun Mar 7 2021 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47864 * 19.58092 * 3 2 1 5 5 C 1.53006 * 109.46757 * 139.57911 * 3 2 1 6 6 C 1.52998 * 109.47365 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46843 * 300.00131 * 6 5 3 8 8 H 1.08995 * 109.47301 * 299.99547 * 7 6 5 9 9 N 1.46505 * 109.47116 * 179.97438 * 7 6 5 10 10 C 1.34778 * 120.00022 * 84.99686 * 9 7 6 11 11 O 1.21276 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00027 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47463 * 180.02562 * 12 10 9 14 14 O 1.42892 * 109.47378 * 180.02562 * 13 12 10 15 15 C 1.35908 * 116.99907 * 180.02562 * 14 13 12 16 16 C 1.38706 * 120.05344 * 179.97438 * 15 14 13 17 17 C 1.38166 * 119.94172 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.97212 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46980 * 299.99951 * 18 17 16 20 20 Si 1.86295 * 109.47294 * 180.02562 * 18 17 16 21 21 C 1.38243 * 120.05887 * 359.74301 * 17 16 15 22 22 C 1.38288 * 120.10724 * 0.51419 * 21 17 16 23 23 C 1.38126 * 120.05386 * 359.48327 * 22 21 17 24 24 C 1.52998 * 109.47436 * 59.99972 * 7 6 5 25 25 C 1.52998 * 109.47010 * 259.57148 * 3 2 1 26 26 H 1.09002 * 109.47252 * 299.99822 * 5 3 2 27 27 H 1.09003 * 109.47323 * 59.99624 * 5 3 2 28 28 H 1.09001 * 109.47385 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46943 * 59.99714 * 6 5 3 30 30 H 0.96999 * 119.99993 * 264.99685 * 9 7 6 31 31 H 1.09006 * 109.47126 * 60.00032 * 12 10 9 32 32 H 1.09000 * 109.47079 * 300.00284 * 12 10 9 33 33 H 1.08998 * 109.47238 * 59.99524 * 13 12 10 34 34 H 1.09009 * 109.46444 * 300.00134 * 13 12 10 35 35 H 1.08006 * 120.02974 * 359.97438 * 16 15 14 36 36 H 1.08997 * 109.47272 * 59.99834 * 18 17 16 37 37 H 0.96705 * 114.00195 * 299.99788 * 19 18 17 38 38 H 1.48497 * 110.00541 * 58.67787 * 20 18 17 39 39 H 1.48503 * 110.00248 * 180.02562 * 20 18 17 40 40 H 1.07993 * 119.94940 * 180.25047 * 21 17 16 41 41 H 1.08002 * 119.97454 * 179.76977 * 22 21 17 42 42 H 1.07999 * 120.02656 * 180.27809 * 23 22 21 43 43 H 1.09003 * 109.47372 * 59.99791 * 24 7 6 44 44 H 1.09000 * 109.47183 * 180.02562 * 24 7 6 45 45 H 1.09001 * 109.46860 * 60.00651 * 25 3 2 46 46 H 1.08995 * 109.47683 * 300.00578 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -0.9673 -0.3444 5 6 3.1174 1.0991 -0.9354 6 6 4.6474 1.1004 -0.9350 7 6 5.1567 1.3619 0.4838 8 1 4.7926 2.3298 0.8279 9 7 6.6218 1.3624 0.4844 10 6 7.2953 2.4878 0.1739 11 8 6.6886 3.5000 -0.1055 12 6 8.8023 2.4882 0.1739 13 6 9.3120 3.8790 -0.2092 14 8 10.7409 3.8793 -0.2098 15 6 11.3576 5.0470 -0.5309 16 6 12.7427 5.1187 -0.5505 17 6 13.3672 6.3072 -0.8768 18 6 14.8720 6.3859 -0.8978 19 8 15.3835 6.0714 0.3989 20 14 15.3971 8.1097 -1.3704 21 6 12.6129 7.4229 -1.1888 22 6 11.2318 7.3554 -1.1648 23 6 10.6027 6.1696 -0.8392 24 6 4.6474 0.2634 1.4192 25 6 3.1178 0.2620 1.4187 26 1 2.7541 0.9131 -1.9461 27 1 2.7536 2.0672 -0.5910 28 1 5.0103 1.8826 -1.6017 29 1 5.0116 0.1323 -1.2791 30 1 7.1070 0.5529 0.7082 31 1 9.1659 1.7562 -0.5474 32 1 9.1657 2.2297 1.1685 33 1 8.9484 4.6107 0.5123 34 1 8.9485 4.1379 -1.2038 35 1 13.3325 4.2464 -0.3102 36 1 15.2630 5.6744 -1.6250 37 1 15.0764 6.6652 1.0976 38 1 14.8439 9.0922 -0.4041 39 1 16.8792 8.2003 -1.3953 40 1 13.1028 8.3498 -1.4475 41 1 10.6446 8.2294 -1.4052 42 1 9.5241 6.1162 -0.8250 43 1 5.0116 -0.7046 1.0751 44 1 5.0099 0.4500 2.4300 45 1 2.7549 -0.5205 2.0850 46 1 2.7540 1.2300 1.7630 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:08 Heat of formation + Delta-G solvation = -65.043148 kcal Electronic energy + Delta-G solvation = -26767.397482 eV Core-core repulsion = 22816.286566 eV Total energy + Delta-G solvation = -3951.110916 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43359 -41.02052 -39.66167 -39.08566 -37.42673 -37.31079 -35.17061 -33.35426 -32.47253 -31.81046 -31.19675 -30.36308 -27.04729 -25.72056 -23.92674 -23.76009 -23.65444 -22.02371 -21.40778 -20.95552 -19.35498 -18.73210 -18.18109 -17.70534 -17.44813 -17.38318 -17.09286 -16.76503 -16.28173 -16.07696 -15.71031 -15.50166 -15.33912 -14.91767 -14.80610 -14.73926 -14.55295 -14.42968 -14.12308 -14.01474 -13.83199 -13.67660 -13.25163 -13.19587 -13.06249 -12.88808 -12.82885 -12.39643 -12.28454 -12.15079 -12.08033 -11.98971 -11.78738 -11.57103 -11.43841 -11.25692 -10.94171 -10.67147 -10.02923 -9.92836 -9.26354 -4.89416 0.20435 0.40107 1.30750 1.59578 1.63236 1.73123 1.74515 1.77500 1.97808 2.52378 2.66811 2.94594 3.41586 3.59862 3.65178 3.69555 3.74159 3.86504 3.92658 4.00412 4.03674 4.10922 4.22147 4.24251 4.24891 4.30533 4.40323 4.41393 4.45878 4.53044 4.56787 4.64440 4.71934 4.72482 4.80735 4.87182 4.99068 5.06041 5.13019 5.18629 5.20310 5.26915 5.34845 5.38609 5.39670 5.44635 5.57979 5.71213 6.34638 6.47755 6.55724 6.56655 7.25281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.236 3.764 3 C 0.013 3.987 4 H 0.150 0.850 5 C -0.107 4.107 6 C -0.121 4.121 7 C 0.139 3.861 8 H 0.066 0.934 9 N -0.710 5.710 10 C 0.520 3.480 11 O -0.584 6.584 12 C -0.134 4.134 13 C 0.073 3.927 14 O -0.324 6.324 15 C 0.117 3.883 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.086 4.086 19 O -0.548 6.548 20 Si 0.774 3.226 21 C -0.157 4.157 22 C -0.076 4.076 23 C -0.211 4.211 24 C -0.114 4.114 25 C -0.107 4.107 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.420 0.580 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.386 0.614 38 H -0.282 1.282 39 H -0.302 1.302 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -3.362 -0.654 4.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.081 4.081 3 C -0.008 4.008 4 H 0.167 0.833 5 C -0.146 4.146 6 C -0.159 4.159 7 C 0.034 3.966 8 H 0.084 0.916 9 N -0.362 5.362 10 C 0.307 3.693 11 O -0.464 6.464 12 C -0.173 4.173 13 C -0.002 4.002 14 O -0.238 6.238 15 C 0.072 3.928 16 C -0.159 4.159 17 C -0.083 4.083 18 C -0.194 4.194 19 O -0.356 6.356 20 Si 0.679 3.321 21 C -0.175 4.175 22 C -0.094 4.094 23 C -0.229 4.229 24 C -0.152 4.152 25 C -0.147 4.147 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.258 0.742 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.235 0.765 38 H -0.209 1.209 39 H -0.231 1.231 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.175 -2.628 -0.877 3.522 hybrid contribution -0.017 -0.223 1.270 1.289 sum 2.158 -2.851 0.393 3.597 Atomic orbital electron populations 1.81310 1.15353 1.10892 1.10489 1.29908 0.95706 0.91186 0.91318 1.19264 0.78592 1.03994 0.98974 0.83300 1.21487 0.95764 0.97702 0.99686 1.21838 0.94117 1.03440 0.96522 1.21083 0.79079 1.00341 0.96069 0.91592 1.45898 1.07248 1.13355 1.69676 1.20562 0.89992 0.83147 0.75581 1.90743 1.71321 1.34326 1.50001 1.21449 0.90909 0.97683 1.07301 1.22456 0.77125 0.98501 1.02139 1.85955 1.21931 1.31526 1.84409 1.19136 0.92374 0.85350 0.95943 1.20316 0.91130 0.99191 1.05302 1.20167 0.96186 0.93100 0.98818 1.25330 0.90875 1.15053 0.88142 1.86570 1.73043 1.58339 1.17659 0.93911 0.77018 0.71983 0.89180 1.21163 0.94346 0.98416 1.03533 1.21244 0.94542 0.97661 0.95946 1.21550 1.00869 0.93636 1.06884 1.21730 0.94155 0.99233 1.00049 1.21510 0.95787 1.03617 0.93763 0.90231 0.92061 0.92807 0.88763 0.74218 0.85489 0.85743 0.91933 0.91645 0.85384 0.85597 0.76460 1.20896 1.23052 0.83531 0.83043 0.84580 0.87918 0.89800 0.89138 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -4.90 18.54 20.00 0.37 -4.53 16 2 C 0.24 0.21 14.65 89.44 1.31 1.52 16 3 C 0.01 -0.12 2.57 -12.60 -0.03 -0.15 16 4 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 5 C -0.11 0.77 5.16 30.60 0.16 0.92 16 6 C -0.12 0.94 5.49 30.59 0.17 1.11 16 7 C 0.14 -1.08 2.45 44.99 0.11 -0.97 16 8 H 0.07 -0.12 7.58 -2.39 -0.02 -0.13 16 9 N -0.71 6.30 5.08 -442.54 -2.25 4.05 16 10 C 0.52 -1.28 7.79 87.66 0.68 -0.59 16 11 O -0.58 -4.08 15.65 -3.02 -0.05 -4.13 16 12 C -0.13 0.82 6.07 29.85 0.18 1.00 16 13 C 0.07 0.00 4.03 71.98 0.29 0.29 16 14 O -0.32 -1.12 10.14 -92.51 -0.94 -2.06 16 15 C 0.12 0.53 6.69 22.50 0.15 0.68 16 16 C -0.14 -0.59 9.55 22.36 0.21 -0.38 16 17 C -0.08 -0.12 5.39 -19.88 -0.11 -0.23 16 18 C -0.09 0.00 2.82 71.24 0.20 0.20 16 19 O -0.55 -1.79 12.77 -148.98 -1.90 -3.69 16 20 Si 0.77 -1.58 29.78 68.60 2.04 0.47 16 21 C -0.16 0.09 8.67 22.28 0.19 0.29 16 22 C -0.08 0.02 10.04 22.26 0.22 0.24 16 23 C -0.21 -0.51 9.04 22.36 0.20 -0.31 16 24 C -0.11 1.48 5.39 30.58 0.16 1.65 16 25 C -0.11 1.11 5.16 30.58 0.16 1.27 16 26 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 30 H 0.42 -6.49 8.60 -92.71 -0.80 -7.29 16 31 H 0.13 -1.25 8.14 -2.38 -0.02 -1.27 16 32 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 33 H 0.06 0.10 7.62 -2.39 -0.02 0.08 16 34 H 0.07 0.08 7.62 -2.38 -0.02 0.06 16 35 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 37 H 0.39 -0.87 8.70 -74.05 -0.64 -1.52 16 38 H -0.28 -0.48 7.11 99.48 0.71 0.23 16 39 H -0.30 -1.68 7.11 99.48 0.71 -0.98 16 40 H 0.15 -0.73 4.87 -2.91 -0.01 -0.75 16 41 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 42 H 0.14 0.13 6.30 -2.91 -0.02 0.11 16 43 H 0.10 -1.78 8.14 -2.39 -0.02 -1.80 16 44 H 0.08 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 46 H 0.06 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -26.36 382.04 1.15 -25.21 By element: Atomic # 1 Polarization: -21.48 SS G_CDS: -0.39 Total: -21.87 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.27 Total: 6.55 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -1.88 Total: -0.48 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -2.89 Total: -9.88 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: 2.04 Total: 0.47 kcal Total: -26.36 1.15 -25.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.833 kcal (2) G-P(sol) polarization free energy of solvation -26.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds