Wall clock time and date at job start Sun Mar 7 2021 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46918 * 209.80446 * 3 2 1 5 5 C 1.53001 * 109.47470 * 329.80277 * 3 2 1 6 6 C 1.52996 * 109.47746 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46710 * 300.00155 * 6 5 3 8 8 H 1.09001 * 109.47137 * 299.99712 * 7 6 5 9 9 N 1.46496 * 109.46730 * 179.97438 * 7 6 5 10 10 C 1.34784 * 120.00155 * 85.00405 * 9 7 6 11 11 O 1.21279 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 10 15 15 O 1.42895 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.35900 * 116.99858 * 179.97438 * 15 14 13 17 17 C 1.38713 * 120.05563 * 179.97438 * 16 15 14 18 18 C 1.38164 * 119.94137 * 180.02562 * 17 16 15 19 19 C 1.50708 * 119.96709 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47084 * 65.00255 * 19 18 17 21 21 Si 1.86307 * 109.46906 * 184.99965 * 19 18 17 22 22 C 1.38241 * 120.06274 * 0.02562 * 18 17 16 23 23 C 1.38296 * 120.10525 * 359.97438 * 22 18 17 24 24 C 1.38117 * 120.05620 * 359.76914 * 23 22 18 25 25 C 1.52998 * 109.47315 * 59.99803 * 7 6 5 26 26 C 1.52992 * 109.47324 * 89.80431 * 3 2 1 27 27 H 1.09007 * 109.47155 * 300.00202 * 5 3 2 28 28 H 1.09001 * 109.47228 * 59.99262 * 5 3 2 29 29 H 1.08997 * 109.47605 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.47085 * 59.99898 * 6 5 3 31 31 H 0.97002 * 120.00100 * 264.99305 * 9 7 6 32 32 H 1.09001 * 109.47324 * 59.99162 * 12 10 9 33 33 H 1.09004 * 109.47043 * 299.99530 * 12 10 9 34 34 H 1.09001 * 109.46832 * 59.99966 * 13 12 10 35 35 H 1.08993 * 109.47194 * 299.99487 * 13 12 10 36 36 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 37 37 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 38 38 H 1.08001 * 120.02800 * 0.03159 * 17 16 15 39 39 H 1.08997 * 109.47165 * 304.99952 * 19 18 17 40 40 H 0.96708 * 114.00011 * 179.97438 * 20 19 18 41 41 H 1.48503 * 109.99970 * 300.00092 * 21 19 18 42 42 H 1.48497 * 109.99883 * 61.31833 * 21 19 18 43 43 H 1.07994 * 119.95033 * 179.97438 * 22 18 17 44 44 H 1.07998 * 119.96707 * 180.02562 * 23 22 18 45 45 H 1.08005 * 120.02619 * 180.27768 * 24 23 22 46 46 H 1.09001 * 109.47093 * 59.99882 * 25 7 6 47 47 H 1.08994 * 109.47090 * 179.97438 * 25 7 6 48 48 H 1.08994 * 109.47305 * 60.00119 * 26 3 2 49 49 H 1.09001 * 109.47135 * 299.99882 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9709 0.8926 0.5108 5 6 3.1186 -1.2458 0.7255 6 6 4.6486 -1.2449 0.7261 7 6 5.1591 -1.2493 -0.7162 8 1 4.7965 -2.1412 -1.2273 9 7 6.6240 -1.2478 -0.7157 10 6 7.2991 -2.4095 -0.6098 11 8 6.6938 -3.4561 -0.5145 12 6 8.8061 -2.4080 -0.6098 13 6 9.3175 -3.8440 -0.4783 14 6 10.8476 -3.8425 -0.4790 15 8 11.3252 -5.1836 -0.3556 16 6 12.6727 -5.3596 -0.3403 17 6 13.2054 -6.6350 -0.2225 18 6 14.5757 -6.8112 -0.2067 19 6 15.1551 -8.1966 -0.0793 20 8 14.8122 -8.9644 -1.2347 21 14 17.0092 -8.0835 0.0634 22 6 15.4157 -5.7179 -0.3077 23 6 14.8870 -4.4454 -0.4253 24 6 13.5179 -4.2644 -0.4469 25 6 4.6485 -0.0028 -1.4418 26 6 3.1180 -0.0040 -1.4424 27 1 2.7553 -1.2425 1.7533 28 1 2.7556 -2.1378 0.2149 29 1 5.0123 -2.1327 1.2434 30 1 5.0112 -0.3530 1.2372 31 1 7.1082 -0.4107 -0.7917 32 1 9.1689 -1.8151 0.2298 33 1 9.1690 -1.9767 -1.5428 34 1 8.9548 -4.4371 -1.3178 35 1 8.9547 -4.2748 0.4548 36 1 11.2101 -3.4117 -1.4123 37 1 11.2107 -3.2492 0.3602 38 1 12.5496 -7.4894 -0.1432 39 1 14.7510 -8.6790 0.8106 40 1 15.1534 -9.8692 -1.2211 41 1 17.5725 -7.4275 -1.1440 42 1 17.3791 -7.3143 1.2785 43 1 16.4865 -5.8577 -0.2948 44 1 15.5453 -3.5929 -0.5045 45 1 13.1056 -3.2708 -0.5432 46 1 5.0111 0.8891 -0.9308 47 1 5.0126 -0.0057 -2.4691 48 1 2.7543 0.8840 -1.9593 49 1 2.7551 -0.8960 -1.9532 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:12 Heat of formation + Delta-G solvation = -70.952686 kcal Electronic energy + Delta-G solvation = -28254.273078 eV Core-core repulsion = 24147.368286 eV Total energy + Delta-G solvation = -4106.904792 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38143 -41.08998 -39.63323 -39.13277 -37.40990 -37.31826 -35.14040 -34.88213 -32.66979 -31.81579 -31.54181 -30.86247 -28.21276 -26.82124 -24.62869 -23.80609 -23.77251 -23.11226 -21.79798 -21.38764 -20.93488 -18.96707 -18.74423 -18.42026 -18.10352 -17.52449 -17.45164 -17.24781 -17.03235 -16.37728 -15.92579 -15.81728 -15.35533 -15.35026 -15.01682 -14.87352 -14.67883 -14.62042 -14.39939 -14.36132 -14.10974 -13.91527 -13.72254 -13.54494 -13.28263 -13.24777 -13.17938 -12.99978 -12.61733 -12.42528 -12.28555 -12.25467 -12.15154 -12.10992 -12.08895 -11.75929 -11.62548 -11.44463 -11.26109 -10.84193 -10.38432 -9.99424 -9.99071 -9.36492 -4.92860 0.09579 0.25906 1.28331 1.65869 1.68957 1.71778 1.75349 1.92383 1.98347 2.38449 2.53419 2.92847 3.40005 3.63132 3.68123 3.73198 3.75770 3.82403 3.85814 3.89032 4.01872 4.02988 4.11758 4.17005 4.20364 4.23519 4.33363 4.35183 4.38987 4.42069 4.44110 4.45105 4.51683 4.61535 4.66047 4.75041 4.86304 4.87267 5.02916 5.05987 5.10370 5.11349 5.17410 5.18999 5.20846 5.23240 5.31898 5.34266 5.40335 5.59978 5.61681 6.34822 6.55075 6.63788 6.88480 7.35094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.235 3.765 3 C 0.014 3.986 4 H 0.151 0.849 5 C -0.108 4.108 6 C -0.120 4.120 7 C 0.138 3.862 8 H 0.061 0.939 9 N -0.713 5.713 10 C 0.508 3.492 11 O -0.590 6.590 12 C -0.128 4.128 13 C -0.101 4.101 14 C 0.055 3.945 15 O -0.334 6.334 16 C 0.123 3.877 17 C -0.147 4.147 18 C -0.053 4.053 19 C -0.088 4.088 20 O -0.565 6.565 21 Si 0.786 3.214 22 C -0.184 4.184 23 C -0.074 4.074 24 C -0.204 4.204 25 C -0.113 4.113 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.420 0.580 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.404 0.596 41 H -0.293 1.293 42 H -0.286 1.286 43 H 0.121 0.879 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 5.665 0.676 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.081 4.081 3 C -0.007 4.007 4 H 0.168 0.832 5 C -0.147 4.147 6 C -0.158 4.158 7 C 0.033 3.967 8 H 0.079 0.921 9 N -0.365 5.365 10 C 0.296 3.704 11 O -0.470 6.470 12 C -0.168 4.168 13 C -0.140 4.140 14 C -0.019 4.019 15 O -0.248 6.248 16 C 0.078 3.922 17 C -0.166 4.166 18 C -0.053 4.053 19 C -0.197 4.197 20 O -0.375 6.375 21 Si 0.691 3.309 22 C -0.202 4.202 23 C -0.092 4.092 24 C -0.223 4.223 25 C -0.150 4.150 26 C -0.147 4.147 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.258 0.742 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.255 0.745 41 H -0.221 1.221 42 H -0.213 1.213 43 H 0.138 0.862 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.512 5.867 0.618 8.787 hybrid contribution -0.355 0.263 0.007 0.442 sum 6.156 6.130 0.626 8.710 Atomic orbital electron populations 1.81309 1.15330 1.10802 1.10559 1.29910 0.95710 0.91217 0.91305 1.19256 0.78593 1.02873 1.00024 0.83191 1.21487 0.95834 0.96160 1.01218 1.21828 0.94067 1.03265 0.96676 1.21044 0.79607 0.99760 0.96299 0.92111 1.45945 1.07022 1.09423 1.74114 1.21116 0.91203 0.83384 0.74701 1.90745 1.71670 1.33456 1.51146 1.21537 0.90165 0.97452 1.07632 1.21155 0.92204 0.97332 1.03268 1.23064 0.94759 0.80898 1.03212 1.86063 1.18715 1.32083 1.87931 1.19181 0.82819 0.94381 0.95835 1.20382 0.94722 0.95566 1.05942 1.19492 0.92835 0.94746 0.98226 1.25006 1.12871 0.90082 0.91750 1.86451 1.80317 1.30040 1.40703 0.94304 0.72881 0.87436 0.76300 1.21021 0.98853 0.93832 1.06467 1.21228 0.95140 0.97150 0.95664 1.21592 0.93987 0.99147 1.07527 1.21736 0.94061 0.97283 1.01953 1.21531 0.95878 1.04032 0.93277 0.90264 0.92278 0.93150 0.88642 0.74241 0.85353 0.85546 0.92301 0.92076 0.89915 0.89659 0.85452 0.89120 0.74506 1.22120 1.21329 0.86205 0.82694 0.82163 0.87795 0.89812 0.89035 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.20 18.54 20.00 0.37 -4.83 16 2 C 0.24 0.37 14.65 89.44 1.31 1.68 16 3 C 0.01 -0.11 2.56 -12.60 -0.03 -0.14 16 4 H 0.15 -2.13 8.14 -2.39 -0.02 -2.15 16 5 C -0.11 0.64 5.16 30.59 0.16 0.80 16 6 C -0.12 0.79 5.50 30.59 0.17 0.96 16 7 C 0.14 -0.91 2.45 44.99 0.11 -0.80 16 8 H 0.06 0.01 7.58 -2.39 -0.02 0.00 16 9 N -0.71 5.95 5.08 -442.53 -2.25 3.70 16 10 C 0.51 -0.78 7.79 87.65 0.68 -0.09 16 11 O -0.59 -5.87 15.65 -3.03 -0.05 -5.92 16 12 C -0.13 1.08 5.70 29.85 0.17 1.25 16 13 C -0.10 0.09 4.87 30.60 0.15 0.24 16 14 C 0.05 -0.14 4.74 71.98 0.34 0.20 16 15 O -0.33 -2.16 10.14 -92.43 -0.94 -3.10 16 16 C 0.12 0.84 6.69 22.51 0.15 0.99 16 17 C -0.15 -1.30 9.62 22.37 0.22 -1.09 16 18 C -0.05 -0.39 5.38 -19.88 -0.11 -0.49 16 19 C -0.09 -0.16 2.79 71.24 0.20 0.04 16 20 O -0.57 -1.32 12.81 -148.98 -1.91 -3.22 16 21 Si 0.79 -1.02 29.85 68.60 2.05 1.03 16 22 C -0.18 -1.13 8.67 22.28 0.19 -0.93 16 23 C -0.07 -0.19 10.04 22.25 0.22 0.04 16 24 C -0.20 -0.42 9.04 22.36 0.20 -0.22 16 25 C -0.11 1.40 5.39 30.61 0.17 1.56 16 26 C -0.11 1.04 5.16 30.61 0.16 1.20 16 27 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 28 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.42 -6.61 8.60 -92.71 -0.80 -7.41 16 32 H 0.13 -1.80 8.14 -2.39 -0.02 -1.82 16 33 H 0.13 -1.73 8.14 -2.38 -0.02 -1.74 16 34 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 35 H 0.06 0.22 8.10 -2.39 -0.02 0.20 16 36 H 0.08 -0.51 7.65 -2.39 -0.02 -0.53 16 37 H 0.09 -0.57 7.67 -2.39 -0.02 -0.59 16 38 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 40 H 0.40 -3.53 8.74 -74.05 -0.65 -4.18 16 41 H -0.29 -1.66 7.05 99.48 0.70 -0.96 16 42 H -0.29 -1.05 7.11 99.48 0.71 -0.34 16 43 H 0.12 0.59 4.86 -2.91 -0.01 0.58 16 44 H 0.16 -0.52 8.06 -2.91 -0.02 -0.55 16 45 H 0.16 -0.76 6.30 -2.91 -0.02 -0.78 16 46 H 0.10 -1.78 8.14 -2.39 -0.02 -1.80 16 47 H 0.08 -1.04 8.14 -2.39 -0.02 -1.05 16 48 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -33.64 403.66 1.29 -32.34 By element: Atomic # 1 Polarization: -24.73 SS G_CDS: -0.44 Total: -25.18 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.46 Total: 5.18 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -1.88 Total: -1.13 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -2.89 Total: -12.24 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.05 Total: 1.03 kcal Total: -33.64 1.29 -32.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.610 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds