Wall clock time and date at job start Sun Mar 7 2021 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47243 * 141.08994 * 3 2 1 5 5 C 1.52994 * 109.47086 * 261.09399 * 3 2 1 6 6 C 1.52999 * 109.47167 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47422 * 299.99841 * 6 5 3 8 8 H 1.09003 * 109.47045 * 300.00310 * 7 6 5 9 9 N 1.46500 * 109.47616 * 180.02562 * 7 6 5 10 10 C 1.34771 * 119.99925 * 84.99845 * 9 7 6 11 11 O 1.21615 * 120.00368 * 359.97438 * 10 9 7 12 12 C 1.47379 * 119.99998 * 180.02562 * 10 9 7 13 13 C 1.36411 * 127.19271 * 180.02562 * 12 10 9 14 14 C 1.50692 * 125.80366 * 359.97438 * 13 12 10 15 15 O 1.42900 * 109.47397 * 89.72088 * 14 13 12 16 16 C 1.35899 * 117.00511 * 180.02562 * 15 14 13 17 17 C 1.38726 * 120.05721 * 180.02562 * 16 15 14 18 18 C 1.38153 * 119.94564 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.05022 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.93900 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47341 * 300.00123 * 20 19 18 22 22 Si 1.86300 * 109.46849 * 180.02562 * 20 19 18 23 23 C 1.38264 * 120.11486 * 0.25533 * 19 18 17 24 24 C 1.38143 * 120.05501 * 359.44957 * 23 19 18 25 25 O 1.33653 * 108.39559 * 179.73694 * 13 12 10 26 26 C 1.34217 * 110.91100 * 0.26002 * 25 13 12 27 27 C 1.34176 * 109.11901 * 0.02562 * 26 25 13 28 28 C 1.53000 * 109.47137 * 59.99562 * 7 6 5 29 29 C 1.52996 * 109.47108 * 21.09363 * 3 2 1 30 30 H 1.09001 * 109.47005 * 300.00063 * 5 3 2 31 31 H 1.08993 * 109.47527 * 59.99920 * 5 3 2 32 32 H 1.09000 * 109.47420 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47263 * 60.00017 * 6 5 3 34 34 H 0.96993 * 119.99531 * 265.00117 * 9 7 6 35 35 H 1.09007 * 109.47228 * 329.71844 * 14 13 12 36 36 H 1.09003 * 109.47771 * 209.72170 * 14 13 12 37 37 H 1.07998 * 120.03265 * 0.03855 * 17 16 15 38 38 H 1.07995 * 119.97802 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.46989 * 60.00454 * 20 19 18 40 40 H 0.96693 * 114.00306 * 299.99773 * 21 20 19 41 41 H 1.48506 * 110.00048 * 58.68772 * 22 20 19 42 42 H 1.48502 * 109.99996 * 180.02562 * 22 20 19 43 43 H 1.08002 * 119.97450 * 179.70367 * 23 19 18 44 44 H 1.08001 * 120.02763 * 180.30227 * 24 23 19 45 45 H 1.08001 * 125.44016 * 179.97438 * 26 25 13 46 46 H 1.08007 * 127.01748 * 180.02562 * 27 26 25 47 47 H 1.09007 * 109.46869 * 60.00080 * 28 7 6 48 48 H 1.08997 * 109.47803 * 180.02562 * 28 7 6 49 49 H 1.09001 * 109.47290 * 60.00157 * 29 3 2 50 50 H 1.08998 * 109.47516 * 299.99405 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9710 0.8005 -0.6455 5 6 3.1179 0.2242 1.4251 6 6 4.6478 0.2255 1.4250 7 6 5.1591 -1.1198 0.9056 8 1 4.7964 -1.9199 1.5510 9 7 6.6241 -1.1188 0.9061 10 6 7.2978 -1.4421 2.0277 11 8 6.6896 -1.7343 3.0395 12 6 8.7715 -1.4406 2.0284 13 6 9.5960 -1.7419 3.0725 14 6 9.1551 -2.1426 4.4567 15 8 9.0105 -3.5629 4.5181 16 6 8.6151 -4.0922 5.7058 17 6 8.4552 -5.4640 5.8363 18 6 8.0526 -5.9994 7.0445 19 6 7.8088 -5.1692 8.1230 20 6 7.3692 -5.7559 9.4396 21 8 6.1390 -6.4604 9.2602 22 14 7.1249 -4.3866 10.6790 23 6 7.9619 -3.8011 7.9938 24 6 8.3701 -3.2613 6.7895 25 8 10.8613 -1.6264 2.6578 26 6 10.9110 -1.2517 1.3700 27 6 9.6604 -1.1104 0.9048 28 6 4.6491 -1.3434 -0.5194 29 6 3.1186 -1.3449 -0.5191 30 1 2.7541 1.1828 1.7949 31 1 2.7549 -0.5756 2.0705 32 1 5.0111 0.3852 2.4402 33 1 5.0105 1.0257 0.7797 34 1 7.1091 -0.8853 0.0993 35 1 8.1997 -1.6699 4.6848 36 1 9.9018 -1.8217 5.1831 37 1 8.6453 -6.1129 4.9942 38 1 7.9275 -7.0673 7.1466 39 1 8.1322 -6.4440 9.8036 40 1 5.4134 -5.9089 8.9373 41 1 6.1095 -3.4248 10.1797 42 1 6.6919 -4.9522 11.9820 43 1 7.7662 -3.1543 8.8362 44 1 8.4942 -2.1930 6.6905 45 1 11.8135 -1.0889 0.7995 46 1 9.3668 -0.8190 -0.0929 47 1 5.0117 -0.5433 -1.1648 48 1 5.0129 -2.3020 -0.8893 49 1 2.7553 -1.5042 -1.5344 50 1 2.7557 -2.1448 0.1263 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:27 Heat of formation + Delta-G solvation = -36.418807 kcal Electronic energy + Delta-G solvation = -34321.454246 eV Core-core repulsion = 29668.223961 eV Total energy + Delta-G solvation = -4653.230285 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.161 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.66739 -41.29691 -40.99736 -39.50946 -39.23049 -37.38153 -37.28945 -35.25183 -34.03221 -32.84452 -31.97382 -31.82222 -31.38749 -30.88010 -27.86796 -26.21481 -25.30673 -23.88079 -23.78064 -23.58331 -22.40591 -21.95779 -21.40962 -20.64798 -19.50056 -19.11423 -18.73239 -18.36221 -17.41768 -17.31432 -17.19058 -16.92943 -16.75727 -16.37274 -16.15060 -16.06632 -15.77193 -15.55734 -15.36980 -15.31535 -14.79903 -14.74409 -14.60993 -14.52041 -14.39668 -14.16895 -13.94447 -13.86344 -13.65495 -13.55167 -13.50187 -13.26486 -13.09318 -13.03023 -12.32994 -12.30817 -12.17283 -12.12434 -12.09811 -12.06818 -11.65094 -11.45506 -11.28241 -11.04753 -10.90351 -10.60658 -10.08020 -10.05392 -9.77423 -9.24374 -4.92856 0.01276 0.26476 0.29294 1.09297 1.32332 1.56470 1.60418 1.72384 1.76132 1.95577 2.09862 2.19456 2.50764 2.63730 2.92588 3.38660 3.42448 3.62592 3.68943 3.70203 3.73007 3.76459 3.80913 3.91351 3.96657 4.01710 4.13963 4.19792 4.22339 4.29168 4.38709 4.40948 4.42458 4.50764 4.51451 4.55522 4.62586 4.68641 4.74259 4.85620 4.85929 4.95321 5.04593 5.11451 5.14237 5.16822 5.18765 5.25166 5.31984 5.33840 5.37002 5.46725 5.55038 5.68624 5.94188 6.26483 6.48070 6.53898 6.55840 7.20150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.236 3.764 3 C 0.013 3.987 4 H 0.151 0.849 5 C -0.106 4.106 6 C -0.119 4.119 7 C 0.141 3.859 8 H 0.065 0.935 9 N -0.701 5.701 10 C 0.583 3.417 11 O -0.572 6.572 12 C -0.222 4.222 13 C 0.037 3.963 14 C 0.135 3.865 15 O -0.322 6.322 16 C 0.126 3.874 17 C -0.163 4.163 18 C -0.058 4.058 19 C -0.158 4.158 20 C -0.078 4.078 21 O -0.550 6.550 22 Si 0.766 3.234 23 C -0.076 4.076 24 C -0.205 4.205 25 O -0.179 6.179 26 C -0.015 4.015 27 C -0.194 4.194 28 C -0.114 4.114 29 C -0.107 4.107 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.385 0.615 41 H -0.285 1.285 42 H -0.303 1.303 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.250 0.750 46 H 0.195 0.805 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 5.272 -5.791 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.081 4.081 3 C -0.008 4.008 4 H 0.169 0.831 5 C -0.146 4.146 6 C -0.158 4.158 7 C 0.036 3.964 8 H 0.083 0.917 9 N -0.353 5.353 10 C 0.372 3.628 11 O -0.453 6.453 12 C -0.227 4.227 13 C -0.016 4.016 14 C 0.060 3.940 15 O -0.237 6.237 16 C 0.081 3.919 17 C -0.182 4.182 18 C -0.076 4.076 19 C -0.159 4.159 20 C -0.186 4.186 21 O -0.358 6.358 22 Si 0.672 3.328 23 C -0.094 4.094 24 C -0.223 4.223 25 O -0.075 6.075 26 C -0.081 4.081 27 C -0.213 4.213 28 C -0.152 4.152 29 C -0.146 4.146 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.254 0.746 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.144 0.856 40 H 0.234 0.766 41 H -0.212 1.212 42 H -0.231 1.231 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.266 0.734 46 H 0.212 0.788 47 H 0.123 0.877 48 H 0.100 0.900 49 H 0.110 0.890 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.963 4.839 -4.391 9.549 hybrid contribution -0.783 -0.246 -0.836 1.171 sum 6.180 4.593 -5.226 9.306 Atomic orbital electron populations 1.81308 1.15331 1.10757 1.10602 1.29892 0.95686 0.91240 0.91279 1.19260 0.78611 1.02588 1.00322 0.83126 1.21479 0.95609 1.03321 0.94167 1.21830 0.94169 0.97733 1.02047 1.21115 0.78451 0.98076 0.98732 0.91710 1.45689 1.07323 1.69020 1.13224 1.17416 0.85739 0.76047 0.83640 1.90785 1.70171 1.50379 1.34006 1.21432 0.93978 1.11767 0.95511 1.22046 0.81630 1.01954 0.95984 1.21144 1.02857 0.79915 0.90040 1.86049 1.82795 1.22938 1.31883 1.19171 0.95054 0.93246 0.84466 1.20624 1.05793 0.92247 0.99495 1.20940 0.95139 1.00576 0.90946 1.20277 1.04864 0.93811 0.96945 1.25176 0.88236 1.05929 0.99297 1.86556 1.20954 1.39935 1.88317 0.94163 0.88408 0.76056 0.74216 1.21015 0.96820 0.94331 0.97187 1.21412 1.06879 1.00809 0.93241 1.83791 1.27876 1.67127 1.28699 1.24915 1.01780 1.00855 0.80519 1.23273 0.91148 1.06514 1.00324 1.21750 0.94285 1.04799 0.94318 1.21522 0.95571 0.94540 1.02979 0.90080 0.92149 0.92837 0.88636 0.74571 0.87530 0.88176 0.84918 0.84321 0.85617 0.76604 1.21159 1.23127 0.83367 0.83409 0.73381 0.78773 0.87680 0.89975 0.88965 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.11 18.54 20.01 0.37 -4.74 16 2 C 0.24 0.32 14.65 89.44 1.31 1.63 16 3 C 0.01 -0.11 2.56 -12.60 -0.03 -0.14 16 4 H 0.15 -2.17 8.14 -2.39 -0.02 -2.19 16 5 C -0.11 0.68 5.16 30.59 0.16 0.83 16 6 C -0.12 0.78 5.49 30.59 0.17 0.95 16 7 C 0.14 -0.80 2.45 44.99 0.11 -0.69 16 8 H 0.06 0.04 7.58 -2.39 -0.02 0.03 16 9 N -0.70 3.59 5.07 -445.84 -2.26 1.33 16 10 C 0.58 1.77 7.78 86.65 0.67 2.44 16 11 O -0.57 -6.09 14.51 -4.08 -0.06 -6.15 16 12 C -0.22 -0.29 6.31 -18.99 -0.12 -0.41 16 13 C 0.04 0.13 7.00 25.26 0.18 0.31 16 14 C 0.13 0.50 4.73 71.23 0.34 0.83 16 15 O -0.32 -2.69 10.12 -92.42 -0.94 -3.63 16 16 C 0.13 0.86 6.69 22.51 0.15 1.01 16 17 C -0.16 -1.00 9.99 22.37 0.22 -0.78 16 18 C -0.06 -0.24 9.61 22.26 0.21 -0.03 16 19 C -0.16 -0.39 5.39 -19.85 -0.11 -0.50 16 20 C -0.08 -0.08 2.82 71.24 0.20 0.12 16 21 O -0.55 -2.41 12.76 -148.98 -1.90 -4.31 16 22 Si 0.77 -0.52 29.78 68.60 2.04 1.52 16 23 C -0.08 -0.10 8.66 22.25 0.19 0.09 16 24 C -0.20 -0.63 9.04 22.37 0.20 -0.43 16 25 O -0.18 -0.20 10.52 4.44 0.05 -0.16 16 26 C -0.02 0.09 12.03 66.89 0.80 0.90 16 27 C -0.19 1.21 10.60 23.65 0.25 1.46 16 28 C -0.11 1.32 5.39 30.61 0.17 1.49 16 29 C -0.11 1.01 5.16 30.61 0.16 1.17 16 30 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H 0.42 -4.85 7.77 -92.71 -0.72 -5.57 16 35 H 0.11 0.51 6.02 -2.38 -0.01 0.49 16 36 H 0.10 -0.10 7.67 -2.39 -0.02 -0.12 16 37 H 0.13 0.66 8.06 -2.91 -0.02 0.63 16 38 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 40 H 0.38 -0.23 8.70 -74.06 -0.64 -0.87 16 41 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 42 H -0.30 -2.11 7.11 99.48 0.71 -1.40 16 43 H 0.15 -0.49 4.87 -2.91 -0.01 -0.50 16 44 H 0.15 -0.16 6.30 -2.91 -0.02 -0.18 16 45 H 0.25 -3.73 8.06 -2.91 -0.02 -3.75 16 46 H 0.20 -2.73 7.74 -2.91 -0.02 -2.75 16 47 H 0.10 -1.74 8.14 -2.38 -0.02 -1.76 16 48 H 0.08 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -30.39 419.10 2.22 -28.17 By element: Atomic # 1 Polarization: -21.96 SS G_CDS: -0.32 Total: -22.29 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.24 Total: 10.25 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: -1.89 Total: -3.41 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -2.85 Total: -14.25 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.04 Total: 1.52 kcal Total: -30.39 2.22 -28.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.249 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds