Wall clock time and date at job start Sun Mar 7 2021 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47367 * 245.19867 * 3 2 1 5 5 C 1.52997 * 109.47172 * 5.19840 * 3 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46626 * 299.99539 * 6 5 3 8 8 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 9 9 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 10 10 C 1.34783 * 119.99811 * 155.00013 * 9 7 6 11 11 O 1.21287 * 119.99943 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00006 * 179.97438 * 10 9 7 13 13 O 1.42894 * 109.47002 * 180.02562 * 12 10 9 14 14 C 1.35907 * 116.99966 * 180.02562 * 13 12 10 15 15 C 1.38711 * 120.05328 * 180.02562 * 14 13 12 16 16 C 1.38171 * 119.94019 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.97092 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47102 * 64.99526 * 17 16 15 19 19 Si 1.86300 * 109.46826 * 184.99578 * 17 16 15 20 20 C 1.38245 * 120.05499 * 359.97438 * 16 15 14 21 21 C 1.38281 * 120.11321 * 359.97438 * 20 16 15 22 22 C 1.38123 * 120.05616 * 359.77072 * 21 20 16 23 23 C 1.52997 * 109.46991 * 60.00378 * 7 6 5 24 24 C 1.52996 * 109.47131 * 299.99311 * 23 7 6 25 25 H 1.09001 * 109.47502 * 60.00232 * 5 3 2 26 26 H 1.09001 * 109.47289 * 300.00028 * 5 3 2 27 27 H 1.08993 * 109.46955 * 60.00011 * 6 5 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 6 5 3 29 29 H 0.97000 * 120.00279 * 335.00513 * 9 7 6 30 30 H 1.08997 * 109.47646 * 300.00758 * 12 10 9 31 31 H 1.09002 * 109.46942 * 60.00572 * 12 10 9 32 32 H 1.07996 * 120.03213 * 359.96980 * 15 14 13 33 33 H 1.08993 * 109.46679 * 304.99344 * 17 16 15 34 34 H 0.96706 * 113.99823 * 60.00071 * 18 17 16 35 35 H 1.48502 * 109.99847 * 180.02562 * 19 17 16 36 36 H 1.48498 * 110.00219 * 301.31758 * 19 17 16 37 37 H 1.08000 * 119.94116 * 180.02562 * 20 16 15 38 38 H 1.08000 * 119.97614 * 180.02562 * 21 20 16 39 39 H 1.07996 * 120.03031 * 180.27428 * 22 21 20 40 40 H 1.09001 * 109.47289 * 179.97438 * 23 7 6 41 41 H 1.09000 * 109.47611 * 59.99933 * 23 7 6 42 42 H 1.08996 * 109.47452 * 300.00000 * 24 23 7 43 43 H 1.09000 * 109.47054 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9712 0.4319 0.9328 5 6 3.1186 -1.4356 -0.1307 6 6 4.6487 -1.4350 -0.1301 7 6 5.1587 -0.6032 -1.3086 8 1 4.7960 -1.0343 -2.2416 9 7 6.6238 -0.6021 -1.3076 10 6 7.2982 -0.3950 -2.4560 11 8 6.6923 -0.2091 -3.4901 12 6 8.8052 -0.3933 -2.4550 13 8 9.2821 -0.1540 -3.7806 14 6 10.6296 -0.1214 -3.9550 15 6 11.1615 0.1068 -5.2156 16 6 12.5317 0.1389 -5.3903 17 6 13.1104 0.3873 -6.7595 18 8 12.7672 1.7061 -7.1896 19 14 14.9646 0.2197 -6.6896 20 6 13.3723 -0.0556 -4.3101 21 6 12.8444 -0.2822 -3.0523 22 6 11.4753 -0.3100 -2.8713 23 6 4.6481 0.8331 -1.1779 24 6 3.1181 0.8324 -1.1785 25 1 2.7556 -1.8669 -1.0636 26 1 2.7556 -2.0282 0.7091 27 1 5.0114 -1.0039 0.8030 28 1 5.0125 -2.4583 -0.2227 29 1 7.1084 -0.7505 -0.4805 30 1 9.1672 0.3922 -1.7916 31 1 9.1694 -1.3597 -2.1064 32 1 10.5053 0.2583 -6.0598 33 1 12.7060 -0.3410 -7.4624 34 1 13.0954 2.4068 -6.6097 35 1 15.5475 0.4630 -8.0336 36 1 15.5254 1.1856 -5.7110 37 1 14.4430 -0.0297 -4.4488 38 1 13.5031 -0.4334 -2.2099 39 1 11.0635 -0.4826 -1.8880 40 1 5.0118 1.4258 -2.0172 41 1 5.0109 1.2643 -0.2448 42 1 2.7553 0.4014 -2.1116 43 1 2.7543 1.8558 -1.0859 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16662488_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:52 Heat of formation + Delta-G solvation = -56.293668 kcal Electronic energy + Delta-G solvation = -25194.096681 eV Core-core repulsion = 21398.902790 eV Total energy + Delta-G solvation = -3795.193891 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58222 -40.88290 -39.67361 -38.88338 -37.42396 -37.24149 -35.22918 -32.48209 -31.95806 -31.81560 -31.01281 -28.82607 -26.80214 -24.44965 -23.77634 -23.66087 -22.45741 -21.50251 -21.06605 -19.31987 -18.74577 -18.49652 -17.85509 -17.40440 -17.27288 -17.02348 -16.73001 -16.21294 -16.00797 -15.55357 -15.35865 -15.29440 -14.96624 -14.78735 -14.68777 -14.52019 -14.12259 -13.95888 -13.92740 -13.70409 -13.45312 -13.25527 -13.02703 -12.99462 -12.59426 -12.30915 -12.17820 -12.08854 -12.05540 -11.98355 -11.57626 -11.44708 -11.27057 -10.91582 -10.65333 -10.09155 -9.92224 -9.26062 -4.90088 0.22886 0.41677 1.28888 1.50106 1.54987 1.62010 1.72826 1.76767 1.97690 2.62253 2.68780 2.94162 3.42008 3.58058 3.67876 3.70222 3.73368 3.88325 4.01650 4.05226 4.12712 4.15650 4.20599 4.24164 4.27138 4.38340 4.39444 4.42848 4.52142 4.55652 4.67329 4.70345 4.86848 5.00476 5.04434 5.12233 5.18178 5.19801 5.27046 5.34155 5.35929 5.39443 5.47392 5.53558 5.72483 6.32202 6.47184 6.54973 6.56407 7.21336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.236 3.764 3 C 0.014 3.986 4 H 0.152 0.848 5 C -0.108 4.108 6 C -0.112 4.112 7 C 0.140 3.860 8 H 0.062 0.938 9 N -0.703 5.703 10 C 0.511 3.489 11 O -0.575 6.575 12 C 0.036 3.964 13 O -0.324 6.324 14 C 0.114 3.886 15 C -0.151 4.151 16 C -0.082 4.082 17 C -0.095 4.095 18 O -0.551 6.551 19 Si 0.786 3.214 20 C -0.159 4.159 21 C -0.070 4.070 22 C -0.200 4.200 23 C -0.121 4.121 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.423 0.577 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.386 0.614 35 H -0.306 1.306 36 H -0.275 1.275 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 -3.563 10.459 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.081 4.081 3 C -0.008 4.008 4 H 0.170 0.830 5 C -0.147 4.147 6 C -0.149 4.149 7 C 0.036 3.964 8 H 0.081 0.919 9 N -0.357 5.357 10 C 0.298 3.702 11 O -0.453 6.453 12 C -0.042 4.042 13 O -0.238 6.238 14 C 0.069 3.931 15 C -0.170 4.170 16 C -0.082 4.082 17 C -0.203 4.203 18 O -0.360 6.360 19 Si 0.690 3.310 20 C -0.177 4.177 21 C -0.088 4.088 22 C -0.219 4.219 23 C -0.160 4.160 24 C -0.147 4.147 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.262 0.738 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.235 0.765 35 H -0.235 1.235 36 H -0.201 1.201 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.978 -3.352 9.007 11.877 hybrid contribution -0.443 1.247 -0.126 1.330 sum 6.535 -2.104 8.881 11.226 Atomic orbital electron populations 1.81311 1.15377 1.10536 1.10860 1.29918 0.95723 0.91301 0.91188 1.19267 0.78563 0.99501 1.03422 0.83030 1.21530 0.95833 0.93395 1.03977 1.21736 0.94063 1.01094 0.98052 1.21103 0.78652 0.96330 1.00360 0.91936 1.45709 1.07247 1.72484 1.10226 1.20546 0.89757 0.76023 0.83921 1.90778 1.71016 1.49561 1.33951 1.22774 0.91211 1.06178 0.84019 1.86128 1.19732 1.87067 1.30857 1.19191 0.81906 0.97125 0.94843 1.20306 0.95156 1.05933 0.95569 1.20107 0.92579 0.99299 0.96241 1.25466 1.13829 0.86394 0.94594 1.86587 1.79305 1.15678 1.54388 0.93851 0.70579 0.89624 0.76937 1.21245 1.00126 1.03561 0.92773 1.21333 0.94624 0.95187 0.97670 1.21644 0.94487 1.06972 0.98757 1.21846 0.94185 0.96479 1.03491 1.21483 0.95718 1.00565 0.96953 0.91882 0.88866 0.87458 0.89526 0.73819 0.85718 0.85577 0.87148 0.86455 0.76452 1.23498 1.20074 0.83582 0.81976 0.81954 0.93310 0.88306 0.92306 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -5.07 18.54 20.00 0.37 -4.70 16 2 C 0.24 0.27 14.65 89.44 1.31 1.58 16 3 C 0.01 -0.12 2.56 -12.60 -0.03 -0.15 16 4 H 0.15 -2.29 8.14 -2.39 -0.02 -2.31 16 5 C -0.11 1.14 5.16 30.60 0.16 1.30 16 6 C -0.11 1.52 5.39 30.60 0.16 1.69 16 7 C 0.14 -1.02 2.45 44.99 0.11 -0.91 16 8 H 0.06 -0.02 7.58 -2.39 -0.02 -0.03 16 9 N -0.70 6.23 5.08 -442.52 -2.25 3.99 16 10 C 0.51 0.01 7.87 87.65 0.69 0.70 16 11 O -0.57 -7.30 16.16 15.99 0.26 -7.04 16 12 C 0.04 -0.18 5.22 71.23 0.37 0.19 16 13 O -0.32 -1.81 9.67 -73.47 -0.71 -2.52 16 14 C 0.11 0.36 6.69 22.51 0.15 0.51 16 15 C -0.15 -0.88 9.63 22.37 0.22 -0.66 16 16 C -0.08 -0.13 5.35 -19.88 -0.11 -0.24 16 17 C -0.10 -0.13 2.80 71.24 0.20 0.07 16 18 O -0.55 -2.88 12.83 -148.98 -1.91 -4.79 16 19 Si 0.79 -1.79 29.88 68.60 2.05 0.26 16 20 C -0.16 0.45 8.67 22.28 0.19 0.65 16 21 C -0.07 0.38 10.04 22.25 0.22 0.60 16 22 C -0.20 0.83 9.04 22.37 0.20 1.03 16 23 C -0.12 0.85 5.49 30.59 0.17 1.02 16 24 C -0.11 0.68 5.16 30.59 0.16 0.84 16 25 H 0.06 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 27 H 0.11 -2.01 8.14 -2.39 -0.02 -2.03 16 28 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16 29 H 0.42 -7.33 8.60 -92.71 -0.80 -8.13 16 30 H 0.13 -1.46 7.65 -2.39 -0.02 -1.48 16 31 H 0.13 -1.50 7.67 -2.39 -0.02 -1.52 16 32 H 0.11 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 34 H 0.39 -0.42 8.70 -74.05 -0.64 -1.06 16 35 H -0.31 -1.81 7.11 99.48 0.71 -1.10 16 36 H -0.27 -0.02 7.01 99.48 0.70 0.68 16 37 H 0.15 -1.00 4.83 -2.91 -0.01 -1.01 16 38 H 0.16 -1.89 8.06 -2.91 -0.02 -1.92 16 39 H 0.16 -1.88 6.30 -2.91 -0.02 -1.90 16 40 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 42 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.08 -0.49 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -33.67 361.13 1.62 -32.04 By element: Atomic # 1 Polarization: -25.08 SS G_CDS: -0.37 Total: -25.45 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.18 Total: 8.21 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -1.88 Total: -0.71 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -2.36 Total: -14.36 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.05 Total: 0.26 kcal Total: -33.67 1.62 -32.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16662488_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.249 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds