Wall clock time and date at job start Sun Mar 7 2021 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 116.99924 * 2 1 4 4 C 1.38815 * 119.93555 * 180.02562 * 3 2 1 5 5 C 1.37925 * 120.06210 * 180.02562 * 4 3 2 6 6 C 1.39354 * 119.93707 * 359.97172 * 5 4 3 7 7 C 1.48410 * 120.06081 * 179.97438 * 6 5 4 8 8 N 1.31622 * 126.04353 * 317.74296 * 7 6 5 9 9 N 1.40070 * 108.11417 * 180.19797 * 8 7 6 10 10 C 1.46495 * 125.92972 * 179.82371 * 9 8 7 11 11 C 1.50704 * 109.47080 * 304.68555 * 10 9 8 12 12 O 1.21278 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99656 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99736 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84840 * 25.32750 * 14 13 11 16 16 C 1.53776 * 113.61342 * 156.52951 * 14 13 11 17 17 C 1.53786 * 87.08042 * 140.06561 * 16 14 13 18 18 H 1.08995 * 113.61651 * 89.11483 * 17 16 14 19 19 C 1.53001 * 113.61219 * 219.93516 * 17 16 14 20 20 C 1.47199 * 109.46837 * 184.99729 * 19 17 16 21 21 N 9.81795 * 122.70409 * 255.38557 * 9 1 2 22 22 C 1.53779 * 87.08000 * 334.56488 * 17 16 14 23 23 C 1.35037 * 108.13694 * 359.55325 * 9 8 7 24 24 C 1.35087 * 107.97988 * 0.26891 * 23 9 8 25 25 C 1.50698 * 126.07516 * 179.97438 * 24 23 9 26 26 O 1.42898 * 109.47400 * 105.17235 * 25 24 23 27 27 Si 1.86297 * 109.47413 * 345.17004 * 25 24 23 28 28 C 1.39345 * 119.87211 * 0.25391 * 6 5 4 29 29 C 1.37932 * 119.93532 * 359.51450 * 28 6 5 30 30 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46908 * 299.99848 * 1 2 3 32 32 H 1.08999 * 109.47552 * 59.99667 * 1 2 3 33 33 H 1.08001 * 119.97173 * 359.96934 * 4 3 2 34 34 H 1.07999 * 120.03038 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46756 * 184.69013 * 10 9 8 36 36 H 1.08998 * 109.47525 * 64.69285 * 10 9 8 37 37 H 0.97002 * 120.00630 * 0.02562 * 13 11 10 38 38 H 1.09001 * 113.61320 * 254.61272 * 16 14 13 39 39 H 1.09000 * 113.61919 * 25.51599 * 16 14 13 40 40 H 1.09000 * 109.46853 * 304.99552 * 19 17 16 41 41 H 1.09003 * 109.47513 * 64.99952 * 19 17 16 42 42 H 1.09008 * 113.61761 * 270.88605 * 22 17 16 43 43 H 1.09000 * 113.61715 * 139.98090 * 22 17 16 44 44 H 1.07998 * 126.00922 * 180.29942 * 23 9 8 45 45 H 1.09004 * 109.47103 * 225.17407 * 25 24 23 46 46 H 0.96695 * 113.99876 * 300.00004 * 26 25 24 47 47 H 1.48502 * 109.99583 * 58.67924 * 27 25 24 48 48 H 1.48492 * 110.00340 * 180.02562 * 27 25 24 49 49 H 1.08003 * 120.03475 * 179.72713 * 28 6 5 50 50 H 1.08000 * 119.96641 * 180.22865 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4322 1.2819 -0.0005 5 6 4.0611 2.5094 0.0000 6 6 3.3034 3.6790 0.0005 7 6 3.9772 5.0013 0.0016 8 7 5.0304 5.3332 0.7179 9 7 5.3484 6.6671 0.4324 10 6 6.4520 7.4320 1.0182 11 6 6.3420 7.4019 2.5209 12 8 5.4317 6.8003 3.0504 13 7 7.2552 8.0436 3.2763 14 6 7.1486 8.0139 4.7372 15 1 6.6105 7.1401 5.1046 16 6 8.4843 8.2628 5.4575 17 6 7.6917 9.1093 6.4675 18 1 7.3022 8.5349 7.3080 19 6 8.4190 10.3826 6.9042 20 6 7.6387 11.0578 7.9539 21 7 7.0363 11.5822 8.7622 22 6 6.6624 9.3387 5.3483 23 6 4.4649 7.1237 -0.4811 24 6 3.6060 6.1212 -0.7678 25 6 2.4549 6.1891 -1.7380 26 8 2.7939 5.4775 -2.9300 27 14 2.1003 7.9693 -2.1573 28 6 1.9119 3.6045 0.0058 29 6 1.2885 2.3741 0.0004 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0190 0.3752 -0.0005 34 1 5.1397 2.5641 0.0000 35 1 6.4032 8.4641 0.6709 36 1 7.4013 6.9910 0.7144 37 1 7.9831 8.5251 2.8529 38 1 8.9215 7.3628 5.8900 39 1 9.1972 8.8398 4.8685 40 1 9.4036 10.1232 7.2934 41 1 8.5304 11.0490 6.0488 42 1 6.8771 10.2099 4.7293 43 1 5.6286 9.3072 5.6926 44 1 4.4482 8.1156 -0.9078 45 1 1.5711 5.7395 -1.2854 46 1 3.5728 5.8237 -3.3866 47 1 3.3076 8.6026 -2.7460 48 1 0.9666 8.0500 -3.1130 49 1 1.3221 4.5092 0.0106 50 1 0.2101 2.3158 0.0008 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16663504_12622750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:42 Heat of formation + Delta-G solvation = 66.408972 kcal Electronic energy + Delta-G solvation = -33844.260240 eV Core-core repulsion = 29227.781653 eV Total energy + Delta-G solvation = -4616.478587 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.168 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.43912 -41.33237 -40.80751 -39.71588 -38.27026 -37.70788 -37.42931 -34.95719 -34.50869 -32.17507 -31.95272 -31.47495 -30.85063 -28.92320 -27.91603 -26.96948 -26.05423 -24.64084 -23.45919 -23.41351 -21.84965 -21.54604 -21.09560 -20.72907 -19.04339 -18.97704 -18.57673 -18.38881 -17.45113 -17.18328 -16.99755 -16.67810 -16.56214 -16.52781 -16.22210 -16.06351 -15.79627 -15.58620 -15.30143 -15.23413 -14.82610 -14.75533 -14.49945 -14.32946 -14.16576 -13.95517 -13.87627 -13.74542 -13.71592 -13.50708 -13.29485 -13.07596 -12.98548 -12.75211 -12.68399 -12.43116 -12.31618 -12.11284 -12.01228 -11.85192 -11.62079 -11.56684 -11.54096 -11.10723 -10.44624 -10.25028 -10.19480 -9.81343 -9.58916 -8.76816 -4.94692 0.32089 0.56174 0.82463 1.21430 1.35263 1.41515 1.55630 1.74596 1.81018 1.82063 1.98414 2.01577 2.43632 2.83865 2.98820 3.19616 3.28498 3.36126 3.45942 3.52286 3.58508 3.62242 3.64887 3.74497 3.83148 3.94496 4.03597 4.05820 4.17541 4.19874 4.25099 4.31048 4.35405 4.43080 4.45173 4.49387 4.55000 4.60657 4.61725 4.63687 4.76350 4.77632 4.84024 4.85058 4.93860 5.03718 5.20339 5.22084 5.34928 5.47495 5.69991 5.71836 5.84629 5.88949 6.26813 6.54298 6.55909 6.58578 6.72423 7.03736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.135 3.865 4 C -0.152 4.152 5 C -0.051 4.051 6 C -0.046 4.046 7 C 0.140 3.860 8 N -0.250 5.250 9 N -0.359 5.359 10 C 0.116 3.884 11 C 0.499 3.501 12 O -0.501 6.501 13 N -0.720 5.720 14 C 0.125 3.875 15 H 0.117 0.883 16 C -0.137 4.137 17 C -0.107 4.107 18 H 0.103 0.897 19 C -0.014 4.014 20 C 0.201 3.799 21 N -0.433 5.433 22 C -0.151 4.151 23 C 0.061 3.939 24 C -0.248 4.248 25 C -0.035 4.035 26 O -0.526 6.526 27 Si 0.679 3.321 28 C -0.050 4.050 29 C -0.207 4.207 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.402 0.598 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.177 0.823 45 H 0.114 0.886 46 H 0.372 0.628 47 H -0.259 1.259 48 H -0.255 1.255 49 H 0.129 0.871 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 3.861 -2.748 6.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.089 3.911 4 C -0.171 4.171 5 C -0.070 4.070 6 C -0.048 4.048 7 C -0.027 4.027 8 N -0.070 5.070 9 N -0.140 5.140 10 C -0.010 4.010 11 C 0.283 3.717 12 O -0.373 6.373 13 N -0.373 5.373 14 C 0.020 3.980 15 H 0.135 0.865 16 C -0.175 4.175 17 C -0.127 4.127 18 H 0.122 0.878 19 C -0.054 4.054 20 C -0.117 4.117 21 N -0.109 5.109 22 C -0.189 4.189 23 C -0.084 4.084 24 C -0.260 4.260 25 C -0.146 4.146 26 O -0.331 6.331 27 Si 0.580 3.420 28 C -0.069 4.069 29 C -0.226 4.226 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.237 0.763 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.194 0.806 45 H 0.131 0.869 46 H 0.219 0.781 47 H -0.184 1.184 48 H -0.180 1.180 49 H 0.146 0.854 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.028 3.994 -0.693 5.714 hybrid contribution 0.677 0.112 -1.742 1.872 sum 4.704 4.106 -2.435 6.702 Atomic orbital electron populations 1.23099 0.78110 1.04183 1.01530 1.86080 1.21633 1.26912 1.88407 1.19132 0.92363 0.84211 0.95392 1.20344 0.91375 0.98546 1.06833 1.20955 0.99866 0.90443 0.95761 1.17561 0.92328 0.88998 1.05942 1.20501 0.93879 0.93645 0.94648 1.77804 1.16582 0.91641 1.20984 1.47820 1.24199 1.09459 1.32570 1.21512 0.90026 0.97526 0.91944 1.20563 0.82786 0.79342 0.89023 1.90844 1.32316 1.40611 1.73528 1.45879 1.29961 1.54694 1.06794 1.22492 0.97760 0.99263 0.78475 0.86494 1.23408 0.96396 1.00706 0.96975 1.22344 0.97372 0.95389 0.97589 0.87826 1.19291 0.97335 0.95276 0.93488 1.29195 0.94196 0.93868 0.94404 1.81314 1.09503 1.09177 1.10942 1.23636 1.00088 0.98342 0.96863 1.22268 0.91873 0.99904 0.94322 1.20386 1.03892 0.94038 1.07696 1.24330 0.96862 1.08531 0.84875 1.86630 1.50875 1.57499 1.38126 0.95282 0.81265 0.76761 0.88670 1.20876 0.93046 0.97261 0.95756 1.21138 1.00203 0.91951 1.09302 0.88083 0.92473 0.92442 0.84861 0.85167 0.85439 0.86494 0.76306 0.89845 0.88735 0.86834 0.87200 0.89069 0.90596 0.80588 0.86865 0.78123 1.18395 1.17985 0.85360 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.32 -1.07 10.49 -19.38 -0.20 -1.27 16 3 C 0.13 0.50 6.69 -39.15 -0.26 0.24 16 4 C -0.15 -0.54 9.97 -39.48 -0.39 -0.94 16 5 C -0.05 -0.19 9.77 -39.28 -0.38 -0.58 16 6 C -0.05 -0.19 5.74 -104.88 -0.60 -0.79 16 7 C 0.14 0.56 6.66 -82.78 -0.55 0.00 16 8 N -0.25 -1.13 11.69 33.43 0.39 -0.74 16 9 N -0.36 -0.34 3.39 -62.58 -0.21 -0.55 16 10 C 0.12 -0.38 6.98 -5.19 -0.04 -0.42 16 11 C 0.50 -0.37 7.86 -10.99 -0.09 -0.45 16 12 O -0.50 -2.42 15.33 5.56 0.09 -2.33 16 13 N -0.72 3.02 5.36 -53.01 -0.28 2.74 16 14 C 0.12 -0.43 4.22 -67.11 -0.28 -0.71 16 15 H 0.12 -0.08 7.50 -51.93 -0.39 -0.47 16 16 C -0.14 0.82 7.39 -25.92 -0.19 0.63 16 17 C -0.11 0.54 3.61 -89.80 -0.32 0.22 16 18 H 0.10 -0.42 8.12 -51.93 -0.42 -0.84 16 19 C -0.01 0.08 5.54 -29.52 -0.16 -0.09 16 20 C 0.20 -0.10 15.42 -20.75 -0.32 -0.42 16 21 N -0.43 -1.66 18.54 42.16 0.78 -0.88 16 22 C -0.15 0.58 7.44 -25.92 -0.19 0.39 16 23 C 0.06 -0.02 9.96 -17.26 -0.17 -0.19 16 24 C -0.25 -0.38 5.35 -104.76 -0.56 -0.94 16 25 C -0.03 -0.02 2.51 36.00 0.09 0.07 16 26 O -0.53 -1.03 12.88 -35.23 -0.45 -1.48 16 27 Si 0.68 -0.85 30.80 -169.99 -5.24 -6.08 16 28 C -0.05 -0.15 8.88 -39.28 -0.35 -0.50 16 29 C -0.21 -0.54 9.02 -39.48 -0.36 -0.89 16 30 H 0.10 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.06 -0.06 7.65 -51.93 -0.40 -0.46 16 32 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 33 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 34 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 35 H 0.13 -0.94 8.07 -51.93 -0.42 -1.36 16 36 H 0.12 -0.62 8.14 -51.93 -0.42 -1.04 16 37 H 0.40 -3.10 8.71 -40.82 -0.36 -3.46 16 38 H 0.08 -0.46 8.14 -51.93 -0.42 -0.89 16 39 H 0.09 -0.75 8.07 -51.93 -0.42 -1.16 16 40 H 0.11 -0.85 8.14 -51.93 -0.42 -1.27 16 41 H 0.11 -0.83 7.85 -51.93 -0.41 -1.24 16 42 H 0.09 -0.46 7.90 -51.92 -0.41 -0.87 16 43 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 44 H 0.18 -0.66 6.33 -52.49 -0.33 -1.00 16 45 H 0.11 0.04 5.55 -51.93 -0.29 -0.25 16 46 H 0.37 -0.38 8.70 45.56 0.40 0.02 16 47 H -0.26 0.11 7.00 56.52 0.40 0.51 16 48 H -0.26 -0.55 7.11 56.52 0.40 -0.14 16 49 H 0.13 0.15 6.20 -52.48 -0.33 -0.18 16 50 H 0.13 0.04 6.28 -52.49 -0.33 -0.29 16 LS Contribution 426.83 15.07 6.43 6.43 Total: 0.00 -15.25 426.83 -9.51 -24.76 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: -6.66 Total: -16.21 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.15 Total: -4.38 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: 0.68 Total: 0.56 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.57 Total: -5.09 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.24 Total: -6.08 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -15.25 -9.51 -24.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_12622750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.171 kcal (2) G-P(sol) polarization free energy of solvation -15.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds