Wall clock time and date at job start Sun Mar 7 2021 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 116.99924 * 2 1 4 4 C 1.38815 * 119.93555 * 180.02562 * 3 2 1 5 5 C 1.37925 * 120.06210 * 180.02562 * 4 3 2 6 6 C 1.39354 * 119.93707 * 359.97172 * 5 4 3 7 7 C 1.48410 * 120.06081 * 179.97438 * 6 5 4 8 8 N 1.31622 * 126.04353 * 317.74296 * 7 6 5 9 9 N 1.40070 * 108.11417 * 180.19797 * 8 7 6 10 10 C 1.46495 * 125.92972 * 179.82371 * 9 8 7 11 11 C 1.50704 * 109.47080 * 304.68555 * 10 9 8 12 12 O 1.21278 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99656 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99736 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84840 * 25.32750 * 14 13 11 16 16 C 1.53776 * 113.61342 * 156.52951 * 14 13 11 17 17 C 1.53786 * 87.08042 * 140.06561 * 16 14 13 18 18 H 1.08995 * 113.61651 * 89.11483 * 17 16 14 19 19 C 1.53001 * 113.61219 * 219.93516 * 17 16 14 20 20 C 1.47199 * 109.46837 * 184.99729 * 19 17 16 21 21 N 9.81795 * 122.70409 * 255.38557 * 9 1 2 22 22 C 1.53779 * 87.08000 * 334.56488 * 17 16 14 23 23 C 1.35037 * 108.13694 * 359.55325 * 9 8 7 24 24 C 1.35087 * 107.97988 * 0.26891 * 23 9 8 25 25 C 1.50698 * 126.07516 * 179.97438 * 24 23 9 26 26 O 1.42898 * 109.47400 * 105.17235 * 25 24 23 27 27 Si 1.86297 * 109.47413 * 345.17004 * 25 24 23 28 28 C 1.39345 * 119.87211 * 0.25391 * 6 5 4 29 29 C 1.37932 * 119.93532 * 359.51450 * 28 6 5 30 30 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46908 * 299.99848 * 1 2 3 32 32 H 1.08999 * 109.47552 * 59.99667 * 1 2 3 33 33 H 1.08001 * 119.97173 * 359.96934 * 4 3 2 34 34 H 1.07999 * 120.03038 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46756 * 184.69013 * 10 9 8 36 36 H 1.08998 * 109.47525 * 64.69285 * 10 9 8 37 37 H 0.97002 * 120.00630 * 0.02562 * 13 11 10 38 38 H 1.09001 * 113.61320 * 254.61272 * 16 14 13 39 39 H 1.09000 * 113.61919 * 25.51599 * 16 14 13 40 40 H 1.09000 * 109.46853 * 304.99552 * 19 17 16 41 41 H 1.09003 * 109.47513 * 64.99952 * 19 17 16 42 42 H 1.09008 * 113.61761 * 270.88605 * 22 17 16 43 43 H 1.09000 * 113.61715 * 139.98090 * 22 17 16 44 44 H 1.07998 * 126.00922 * 180.29942 * 23 9 8 45 45 H 1.09004 * 109.47103 * 225.17407 * 25 24 23 46 46 H 0.96695 * 113.99876 * 300.00004 * 26 25 24 47 47 H 1.48502 * 109.99583 * 58.67924 * 27 25 24 48 48 H 1.48492 * 110.00340 * 180.02562 * 27 25 24 49 49 H 1.08003 * 120.03475 * 179.72713 * 28 6 5 50 50 H 1.08000 * 119.96641 * 180.22865 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4322 1.2819 -0.0005 5 6 4.0611 2.5094 0.0000 6 6 3.3034 3.6790 0.0005 7 6 3.9772 5.0013 0.0016 8 7 5.0304 5.3332 0.7179 9 7 5.3484 6.6671 0.4324 10 6 6.4520 7.4320 1.0182 11 6 6.3420 7.4019 2.5209 12 8 5.4317 6.8003 3.0504 13 7 7.2552 8.0436 3.2763 14 6 7.1486 8.0139 4.7372 15 1 6.6105 7.1401 5.1046 16 6 8.4843 8.2628 5.4575 17 6 7.6917 9.1093 6.4675 18 1 7.3022 8.5349 7.3080 19 6 8.4190 10.3826 6.9042 20 6 7.6387 11.0578 7.9539 21 7 7.0363 11.5822 8.7622 22 6 6.6624 9.3387 5.3483 23 6 4.4649 7.1237 -0.4811 24 6 3.6060 6.1212 -0.7678 25 6 2.4549 6.1891 -1.7380 26 8 2.7939 5.4775 -2.9300 27 14 2.1003 7.9693 -2.1573 28 6 1.9119 3.6045 0.0058 29 6 1.2885 2.3741 0.0004 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0190 0.3752 -0.0005 34 1 5.1397 2.5641 0.0000 35 1 6.4032 8.4641 0.6709 36 1 7.4013 6.9910 0.7144 37 1 7.9831 8.5251 2.8529 38 1 8.9215 7.3628 5.8900 39 1 9.1972 8.8398 4.8685 40 1 9.4036 10.1232 7.2934 41 1 8.5304 11.0490 6.0488 42 1 6.8771 10.2099 4.7293 43 1 5.6286 9.3072 5.6926 44 1 4.4482 8.1156 -0.9078 45 1 1.5711 5.7395 -1.2854 46 1 3.5728 5.8237 -3.3866 47 1 3.3076 8.6026 -2.7460 48 1 0.9666 8.0500 -3.1130 49 1 1.3221 4.5092 0.0106 50 1 0.2101 2.3158 0.0008 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16663504_12622750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:40 Heat of formation + Delta-G solvation = 60.179147 kcal Electronic energy + Delta-G solvation = -33844.530385 eV Core-core repulsion = 29227.781653 eV Total energy + Delta-G solvation = -4616.748732 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.168 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.45530 -41.16267 -40.93952 -39.55989 -38.42963 -37.76449 -37.45363 -34.84699 -34.45291 -32.33393 -32.00112 -31.36777 -30.81845 -28.87546 -27.93849 -26.59235 -26.03883 -24.53582 -23.64604 -23.41958 -21.76789 -21.51794 -21.05449 -20.52144 -19.19069 -18.84491 -18.50527 -18.22574 -17.39344 -17.19559 -17.02323 -16.67990 -16.52185 -16.30433 -16.19261 -16.06887 -15.70009 -15.53828 -15.36023 -15.17837 -14.89192 -14.75475 -14.52646 -14.33889 -14.20169 -13.85819 -13.80397 -13.77539 -13.55201 -13.28270 -13.20074 -13.06604 -12.87239 -12.79828 -12.51188 -12.46601 -12.16015 -12.10144 -12.00206 -11.75857 -11.56903 -11.52988 -11.25237 -11.06941 -10.48346 -10.27499 -10.04377 -9.98740 -9.62862 -8.95343 -4.82729 0.10645 0.32620 0.84889 1.33148 1.45170 1.56400 1.63423 1.69066 1.82904 1.89125 2.04691 2.22845 2.32633 2.77087 3.10788 3.39726 3.55500 3.56404 3.68081 3.72744 3.75459 3.80245 3.88450 3.90177 3.95688 4.02832 4.19357 4.21702 4.24002 4.31901 4.37239 4.40328 4.41852 4.52893 4.58695 4.60149 4.71099 4.77814 4.82370 4.88765 4.89996 4.94696 4.98132 5.01769 5.06344 5.11847 5.21156 5.25831 5.35215 5.50438 5.55534 5.67196 5.68521 5.96808 6.37760 6.58439 6.63076 6.67129 6.69273 7.28667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.121 3.879 4 C -0.164 4.164 5 C -0.063 4.063 6 C -0.060 4.060 7 C 0.117 3.883 8 N -0.293 5.293 9 N -0.359 5.359 10 C 0.108 3.892 11 C 0.494 3.506 12 O -0.568 6.568 13 N -0.699 5.699 14 C 0.112 3.888 15 H 0.077 0.923 16 C -0.114 4.114 17 C -0.103 4.103 18 H 0.085 0.915 19 C -0.009 4.009 20 C 0.232 3.768 21 N -0.521 5.521 22 C -0.150 4.150 23 C 0.075 3.925 24 C -0.263 4.263 25 C -0.051 4.051 26 O -0.550 6.550 27 Si 0.769 3.231 28 C -0.058 4.058 29 C -0.208 4.208 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.179 0.821 36 H 0.141 0.859 37 H 0.424 0.576 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.114 0.886 43 H 0.043 0.957 44 H 0.218 0.782 45 H 0.106 0.894 46 H 0.382 0.618 47 H -0.256 1.256 48 H -0.306 1.306 49 H 0.142 0.858 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 6.167 -4.167 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.076 3.924 4 C -0.182 4.182 5 C -0.082 4.082 6 C -0.062 4.062 7 C -0.049 4.049 8 N -0.114 5.114 9 N -0.140 5.140 10 C -0.015 4.015 11 C 0.280 3.720 12 O -0.446 6.446 13 N -0.352 5.352 14 C 0.007 3.993 15 H 0.096 0.904 16 C -0.152 4.152 17 C -0.123 4.123 18 H 0.104 0.896 19 C -0.049 4.049 20 C -0.084 4.084 21 N -0.199 5.199 22 C -0.188 4.188 23 C -0.070 4.070 24 C -0.275 4.275 25 C -0.160 4.160 26 O -0.357 6.357 27 Si 0.672 3.328 28 C -0.078 4.078 29 C -0.226 4.226 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.196 0.804 36 H 0.159 0.841 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.062 0.938 44 H 0.234 0.766 45 H 0.124 0.876 46 H 0.231 0.769 47 H -0.181 1.181 48 H -0.234 1.234 49 H 0.160 0.840 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.197 6.304 -2.096 9.085 hybrid contribution 0.032 -0.653 -1.311 1.465 sum 6.229 5.651 -3.407 9.075 Atomic orbital electron populations 1.23360 0.76379 1.05623 1.02366 1.86050 1.23539 1.26839 1.88452 1.19287 0.92566 0.84789 0.95805 1.20509 0.91887 0.98760 1.07081 1.21030 0.99979 0.90761 0.96467 1.17845 0.93002 0.89589 1.05806 1.20662 0.94400 0.94216 0.95578 1.77704 1.17427 0.94137 1.22177 1.48136 1.24935 1.08536 1.32406 1.22028 0.89766 0.99930 0.89801 1.21106 0.82161 0.78430 0.90347 1.90830 1.35203 1.43692 1.74864 1.45722 1.29612 1.53582 1.06334 1.22426 0.99610 0.98130 0.79118 0.90434 1.23354 0.95241 1.00710 0.95892 1.22240 0.97297 0.95838 0.96965 0.89636 1.19700 0.97356 0.94742 0.93091 1.30203 0.92584 0.92006 0.93588 1.81335 1.12370 1.12241 1.13934 1.23673 0.98712 0.98777 0.97670 1.22820 0.90348 1.00789 0.93092 1.20528 1.04923 0.93913 1.08124 1.24705 0.96395 1.10534 0.84381 1.86590 1.51619 1.58754 1.38750 0.94245 0.78275 0.74098 0.86173 1.21108 0.92961 0.98026 0.95660 1.21391 1.01287 0.91461 1.08464 0.86433 0.91614 0.91580 0.84232 0.85248 0.80365 0.84143 0.73711 0.90033 0.85211 0.83823 0.83790 0.86777 0.93762 0.76593 0.87605 0.76912 1.18063 1.23361 0.84040 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.34 -2.69 10.49 -92.27 -0.97 -3.66 16 3 C 0.12 1.12 6.69 22.55 0.15 1.28 16 4 C -0.16 -1.59 9.97 22.33 0.22 -1.37 16 5 C -0.06 -0.66 9.77 22.46 0.22 -0.44 16 6 C -0.06 -0.65 5.74 -20.03 -0.12 -0.76 16 7 C 0.12 1.14 6.66 42.53 0.28 1.42 16 8 N -0.29 -3.12 11.69 -48.16 -0.56 -3.68 16 9 N -0.36 -0.43 3.39 -351.91 -1.19 -1.62 16 10 C 0.11 -0.95 6.98 85.64 0.60 -0.36 16 11 C 0.49 -0.88 7.86 87.66 0.69 -0.20 16 12 O -0.57 -6.66 15.33 -3.02 -0.05 -6.71 16 13 N -0.70 6.88 5.36 -440.03 -2.36 4.52 16 14 C 0.11 -0.77 4.22 45.52 0.19 -0.58 16 15 H 0.08 0.12 7.50 -2.39 -0.02 0.10 16 16 C -0.11 1.62 7.39 31.12 0.23 1.85 16 17 C -0.10 1.15 3.61 -10.27 -0.04 1.11 16 18 H 0.09 -0.62 8.12 -2.39 -0.02 -0.64 16 19 C -0.01 0.13 5.54 28.79 0.16 0.29 16 20 C 0.23 -0.29 15.42 89.44 1.38 1.09 16 21 N -0.52 -4.71 18.54 20.01 0.37 -4.34 16 22 C -0.15 1.22 7.44 31.12 0.23 1.45 16 23 C 0.07 -0.16 9.96 83.47 0.83 0.67 16 24 C -0.26 -0.87 5.35 -19.95 -0.11 -0.98 16 25 C -0.05 -0.07 2.51 71.24 0.18 0.11 16 26 O -0.55 -2.62 12.88 -148.98 -1.92 -4.53 16 27 Si 0.77 -2.79 30.80 68.60 2.11 -0.68 16 28 C -0.06 -0.46 8.88 22.46 0.20 -0.26 16 29 C -0.21 -1.39 9.02 22.34 0.20 -1.18 16 30 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.07 -0.14 7.65 -2.39 -0.02 -0.15 16 32 H 0.07 -0.14 7.66 -2.39 -0.02 -0.15 16 33 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.13 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.18 -3.47 8.07 -2.38 -0.02 -3.49 16 36 H 0.14 -1.88 8.14 -2.39 -0.02 -1.90 16 37 H 0.42 -8.01 8.71 -92.71 -0.81 -8.82 16 38 H 0.08 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H 0.13 -2.70 8.07 -2.39 -0.02 -2.72 16 40 H 0.14 -2.73 8.14 -2.39 -0.02 -2.75 16 41 H 0.14 -2.86 7.85 -2.39 -0.02 -2.88 16 42 H 0.11 -1.46 7.90 -2.38 -0.02 -1.48 16 43 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.22 -2.46 6.33 -2.91 -0.02 -2.47 16 45 H 0.11 0.20 5.55 -2.38 -0.01 0.19 16 46 H 0.38 -0.64 8.70 -74.06 -0.64 -1.29 16 47 H -0.26 1.05 7.00 99.48 0.70 1.74 16 48 H -0.31 -1.47 7.11 99.48 0.71 -0.77 16 49 H 0.14 0.58 6.20 -2.91 -0.02 0.56 16 50 H 0.15 0.19 6.28 -2.91 -0.02 0.17 16 Total: 0.00 -44.32 426.83 1.64 -42.68 By element: Atomic # 1 Polarization: -25.82 SS G_CDS: -0.41 Total: -26.23 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.62 Total: 4.25 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -3.75 Total: -5.12 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -2.93 Total: -14.90 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.11 Total: -0.68 kcal Total: -44.32 1.64 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_12622750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.858 kcal (2) G-P(sol) polarization free energy of solvation -44.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds