Wall clock time and date at job start Sun Mar 7 2021 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36541 * 126.64918 * 2 1 4 4 C 1.46653 * 125.98363 * 0.02562 * 3 2 1 5 5 O 1.21700 * 120.00537 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00289 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00476 * 180.02562 * 6 4 3 8 8 H 1.08991 * 112.85023 * 23.80013 * 7 6 4 9 9 C 1.53785 * 113.61694 * 155.00087 * 7 6 4 10 10 C 1.53776 * 87.08103 * 139.97655 * 9 7 6 11 11 H 1.09007 * 113.61302 * 89.12072 * 10 9 7 12 12 C 1.53004 * 113.61463 * 219.93177 * 10 9 7 13 13 C 1.47202 * 109.47036 * 185.00725 * 12 10 9 14 14 N 9.93331 * 100.72929 * 342.97043 * 2 1 3 15 15 C 1.53774 * 87.08299 * 334.56910 * 10 9 7 16 16 O 1.34912 * 108.02619 * 180.02562 * 3 2 1 17 17 C 1.33925 * 109.38592 * 359.97438 * 16 3 2 18 18 C 1.50703 * 125.61743 * 179.97438 * 17 16 3 19 19 O 1.42904 * 109.47020 * 270.02521 * 18 17 16 20 20 C 1.35895 * 116.99866 * 179.97438 * 19 18 17 21 21 C 1.38735 * 120.05190 * 180.02562 * 20 19 18 22 22 C 1.38147 * 119.94129 * 179.97438 * 21 20 19 23 23 C 1.38267 * 120.05789 * 359.97438 * 22 21 20 24 24 C 1.50699 * 119.94534 * 179.97438 * 23 22 21 25 25 O 1.42895 * 109.47158 * 299.99634 * 24 23 22 26 26 Si 1.86300 * 109.46944 * 180.02562 * 24 23 22 27 27 C 1.38271 * 120.10847 * 0.27231 * 23 22 21 28 28 C 1.38146 * 120.05540 * 359.45178 * 27 23 22 29 29 C 1.35132 * 108.76605 * 0.24637 * 17 16 3 30 30 H 1.08996 * 109.47052 * 89.99858 * 1 2 3 31 31 H 1.08996 * 109.46982 * 209.99689 * 1 2 3 32 32 H 1.08994 * 109.46681 * 329.99725 * 1 2 3 33 33 H 0.97001 * 119.99527 * 359.97438 * 6 4 3 34 34 H 1.08998 * 113.61625 * 254.53352 * 9 7 6 35 35 H 1.09002 * 113.61121 * 25.42810 * 9 7 6 36 36 H 1.09003 * 109.46762 * 305.00371 * 12 10 9 37 37 H 1.08999 * 109.47067 * 65.00417 * 12 10 9 38 38 H 1.09005 * 113.61095 * 270.87632 * 15 10 9 39 39 H 1.09001 * 113.61426 * 139.98833 * 15 10 9 40 40 H 1.08994 * 109.47190 * 150.03207 * 18 17 16 41 41 H 1.08999 * 109.46790 * 30.02264 * 18 17 16 42 42 H 1.07993 * 120.03328 * 359.95220 * 21 20 19 43 43 H 1.07996 * 119.97399 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47247 * 60.00087 * 24 23 22 45 45 H 0.96698 * 114.00355 * 300.00487 * 25 24 23 46 46 H 1.48506 * 110.00048 * 180.02562 * 26 24 23 47 47 H 1.48502 * 109.99996 * 301.31619 * 26 24 23 48 48 H 1.08003 * 119.96738 * 179.72707 * 27 23 22 49 49 H 1.08003 * 120.02766 * 180.26922 * 28 27 23 50 50 H 1.08002 * 126.43902 * 179.72029 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0955 0.0000 4 6 1.8843 2.4951 0.0005 5 8 0.6968 2.7614 0.0006 6 7 2.7971 3.4867 0.0010 7 6 2.3599 4.8850 0.0021 8 1 1.3566 5.0143 0.4078 9 6 3.3950 5.8537 0.5980 10 6 3.0112 6.8307 -0.5258 11 1 2.1856 7.4931 -0.2654 12 6 4.2056 7.5769 -1.1237 13 6 3.7259 8.5684 -2.1002 14 7 3.3563 9.3317 -2.8583 15 6 2.5802 5.6003 -1.3412 16 8 3.6005 0.6646 -0.0006 17 6 3.6184 -0.6745 -0.0004 18 6 4.8551 -1.5357 -0.0014 19 8 5.2450 -1.8077 -1.3491 20 6 6.3507 -2.5771 -1.5280 21 6 6.7863 -2.8801 -2.8099 22 6 7.9109 -3.6621 -2.9892 23 6 8.6026 -4.1422 -1.8925 24 6 9.8288 -4.9955 -2.0910 25 8 9.4769 -6.1728 -2.8205 26 14 10.5243 -5.4787 -0.4316 27 6 8.1676 -3.8458 -0.6139 28 6 7.0468 -3.0596 -0.4293 29 6 2.3448 -1.1262 -0.0052 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5139 33 1 3.7436 3.2746 0.0013 34 1 3.1357 6.2108 1.5946 35 1 4.4210 5.4919 0.5305 36 1 4.7516 8.0848 -0.3286 37 1 4.8657 6.8666 -1.6214 38 1 3.3834 5.1694 -1.9389 39 1 1.6631 5.7530 -1.9103 40 1 4.6449 -2.4738 0.5123 41 1 5.6622 -1.0131 0.5119 42 1 6.2464 -2.5054 -3.6669 43 1 8.2502 -3.8986 -3.9868 44 1 10.5769 -4.4324 -2.6489 45 1 8.8138 -6.7236 -2.3822 46 1 11.7345 -6.3200 -0.6136 47 1 10.8647 -4.2628 0.3500 48 1 8.7071 -4.2257 0.2411 49 1 6.7099 -2.8248 0.5697 50 1 2.0307 -2.1595 -0.0105 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16663504_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:33:24 Heat of formation + Delta-G solvation = -7.794481 kcal Electronic energy + Delta-G solvation = -33050.474504 eV Core-core repulsion = 28398.485463 eV Total energy + Delta-G solvation = -4651.989041 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.161 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.91303 -41.29885 -41.13520 -39.60327 -39.18713 -37.47682 -37.15854 -35.50588 -34.67599 -33.16974 -32.04920 -31.53411 -31.08886 -28.88107 -28.21933 -26.64493 -26.19561 -24.75961 -23.88563 -22.72925 -22.32289 -22.16416 -21.18641 -20.43441 -19.44565 -19.13563 -18.68308 -18.30224 -17.50769 -17.37178 -17.25083 -16.86208 -16.62536 -16.35773 -16.06640 -15.96875 -15.76740 -15.64830 -15.34977 -15.22208 -14.85622 -14.63292 -14.44455 -14.32035 -14.19570 -14.09953 -13.90073 -13.79053 -13.58666 -13.57300 -13.56511 -13.38582 -13.34186 -12.94273 -12.79624 -12.54958 -12.20688 -12.08491 -12.03313 -12.01238 -11.70219 -11.57357 -11.32657 -11.17717 -10.78882 -10.38959 -10.22713 -10.01448 -9.67545 -9.20232 -4.97460 -0.24179 0.30251 0.33712 0.98636 1.35978 1.37727 1.65646 1.78707 1.85651 1.97335 2.00468 2.07182 2.40957 2.68781 3.06898 3.32590 3.50192 3.58273 3.65759 3.67244 3.71334 3.74038 3.83899 3.85328 3.92397 3.98091 4.05562 4.12330 4.31681 4.33909 4.35655 4.45926 4.49492 4.52781 4.52973 4.63779 4.70816 4.72151 4.77700 4.83106 4.88044 4.93303 4.97992 5.00369 5.02730 5.09027 5.16222 5.18579 5.24206 5.28579 5.35500 5.53143 5.56329 5.71708 5.72233 6.31723 6.37790 6.66190 6.81606 6.96544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.099 4.099 3 C -0.093 4.093 4 C 0.601 3.399 5 O -0.549 6.549 6 N -0.695 5.695 7 C 0.109 3.891 8 H 0.100 0.900 9 C -0.116 4.116 10 C -0.097 4.097 11 H 0.097 0.903 12 C -0.011 4.011 13 C 0.233 3.767 14 N -0.518 5.518 15 C -0.155 4.155 16 O -0.158 6.158 17 C 0.011 3.989 18 C 0.136 3.864 19 O -0.327 6.327 20 C 0.126 3.874 21 C -0.163 4.163 22 C -0.062 4.062 23 C -0.161 4.161 24 C -0.072 4.072 25 O -0.559 6.559 26 Si 0.779 3.221 27 C -0.077 4.077 28 C -0.200 4.200 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.395 0.605 46 H -0.305 1.305 47 H -0.282 1.282 48 H 0.150 0.850 49 H 0.162 0.838 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -5.510 8.139 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.145 4.145 4 C 0.388 3.612 5 O -0.430 6.430 6 N -0.345 5.345 7 C 0.005 3.995 8 H 0.118 0.882 9 C -0.154 4.154 10 C -0.118 4.118 11 H 0.115 0.885 12 C -0.051 4.051 13 C -0.083 4.083 14 N -0.196 5.196 15 C -0.194 4.194 16 O -0.054 6.054 17 C -0.041 4.041 18 C 0.062 3.938 19 O -0.242 6.242 20 C 0.081 3.919 21 C -0.181 4.181 22 C -0.080 4.080 23 C -0.161 4.161 24 C -0.182 4.182 25 O -0.367 6.367 26 Si 0.685 3.315 27 C -0.095 4.095 28 C -0.218 4.218 29 C -0.207 4.207 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.120 0.880 45 H 0.245 0.755 46 H -0.234 1.234 47 H -0.209 1.209 48 H 0.167 0.833 49 H 0.179 0.821 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.048 -3.569 6.988 8.830 hybrid contribution 0.144 0.136 -0.674 0.702 sum 4.192 -3.433 6.315 8.321 Atomic orbital electron populations 1.20442 0.87656 1.03946 1.03103 1.20974 0.98363 0.91509 0.99326 1.21894 0.81706 0.94980 1.15926 1.16671 0.85743 0.82428 0.76379 1.90860 1.17128 1.82769 1.52208 1.45832 1.09971 1.05681 1.73031 1.22709 1.00494 0.78145 0.98198 0.88205 1.23366 1.00093 0.93143 0.98770 1.22237 0.97898 0.94774 0.96871 0.88486 1.19687 0.98034 0.93053 0.94290 1.30182 0.91759 0.93181 0.93205 1.81382 1.11235 1.13717 1.13310 1.23699 1.02409 0.96394 0.96888 1.83949 1.27927 1.22504 1.71036 1.22408 0.96904 0.80332 1.04458 1.21270 0.91667 0.98222 0.82656 1.86110 1.42298 1.66457 1.29305 1.19072 0.86503 0.91715 0.94616 1.20618 0.99115 1.02947 0.95464 1.20902 0.93292 0.94339 0.99460 1.20338 0.99339 1.02646 0.93820 1.25140 0.97273 0.87359 1.08410 1.86463 1.64614 1.34943 1.50663 0.93778 0.81635 0.80448 0.75622 1.21052 0.95611 0.96484 0.96318 1.21489 0.98316 1.03026 0.99004 1.21890 0.90994 1.01206 1.06573 0.90723 0.89293 0.91039 0.74494 0.88959 0.86186 0.83559 0.84507 0.87944 0.92785 0.85102 0.87763 0.85171 0.85034 0.87978 0.75512 1.23360 1.20870 0.83257 0.82086 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 9.82 71.24 0.70 0.44 16 2 C -0.10 -0.37 6.20 -19.74 -0.12 -0.49 16 3 C -0.09 -0.40 7.13 24.07 0.17 -0.22 16 4 C 0.60 3.03 7.79 86.44 0.67 3.71 16 5 O -0.55 -6.32 14.34 -4.35 -0.06 -6.38 16 6 N -0.70 1.74 5.35 -444.03 -2.38 -0.63 16 7 C 0.11 -0.49 4.24 45.52 0.19 -0.30 16 8 H 0.10 0.01 7.46 -2.39 -0.02 -0.01 16 9 C -0.12 1.40 7.39 31.12 0.23 1.63 16 10 C -0.10 0.97 3.61 -10.27 -0.04 0.93 16 11 H 0.10 -0.77 8.12 -2.38 -0.02 -0.78 16 12 C -0.01 0.13 5.54 28.79 0.16 0.29 16 13 C 0.23 0.02 15.42 89.43 1.38 1.40 16 14 N -0.52 -5.23 18.55 20.02 0.37 -4.86 16 15 C -0.16 0.84 7.43 31.12 0.23 1.07 16 16 O -0.16 -0.21 10.40 -4.96 -0.05 -0.27 16 17 C 0.01 -0.01 6.94 24.97 0.17 0.16 16 18 C 0.14 -0.90 5.27 71.24 0.38 -0.52 16 19 O -0.33 0.13 10.12 -92.36 -0.93 -0.80 16 20 C 0.13 -0.13 6.69 22.51 0.15 0.02 16 21 C -0.16 -0.11 9.99 22.37 0.22 0.12 16 22 C -0.06 0.00 9.60 22.25 0.21 0.21 16 23 C -0.16 0.32 5.39 -19.85 -0.11 0.21 16 24 C -0.07 0.15 2.82 71.24 0.20 0.35 16 25 O -0.56 0.49 12.76 -148.98 -1.90 -1.41 16 26 Si 0.78 -3.34 29.78 68.60 2.04 -1.30 16 27 C -0.08 0.38 8.66 22.26 0.19 0.57 16 28 C -0.20 1.07 9.04 22.37 0.20 1.27 16 29 C -0.19 0.10 10.73 22.07 0.24 0.34 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 0.46 6.44 -2.39 -0.02 0.44 16 33 H 0.42 -3.07 8.48 -92.71 -0.79 -3.86 16 34 H 0.09 -1.16 8.14 -2.39 -0.02 -1.17 16 35 H 0.12 -2.00 8.08 -2.39 -0.02 -2.02 16 36 H 0.15 -2.55 8.14 -2.39 -0.02 -2.57 16 37 H 0.14 -2.24 7.85 -2.39 -0.02 -2.26 16 38 H 0.10 -0.77 7.90 -2.38 -0.02 -0.79 16 39 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.13 -1.62 7.66 -2.39 -0.02 -1.64 16 41 H 0.10 -1.06 7.66 -2.39 -0.02 -1.08 16 42 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 44 H 0.10 -0.04 7.96 -2.39 -0.02 -0.06 16 45 H 0.39 -3.56 8.70 -74.06 -0.64 -4.21 16 46 H -0.31 -1.26 7.11 99.48 0.71 -0.55 16 47 H -0.28 0.11 7.11 99.48 0.71 0.82 16 48 H 0.15 -1.41 4.87 -2.91 -0.01 -1.42 16 49 H 0.16 -1.87 6.30 -2.91 -0.02 -1.89 16 50 H 0.18 -1.02 8.06 -2.91 -0.02 -1.05 16 Total: 0.00 -30.76 427.58 2.15 -28.62 By element: Atomic # 1 Polarization: -23.79 SS G_CDS: -0.38 Total: -24.17 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.44 Total: 11.20 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -2.00 Total: -5.49 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -2.95 Total: -8.86 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.04 Total: -1.30 kcal Total: -30.76 2.15 -28.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.823 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds