Wall clock time and date at job start Sun Mar 7 2021 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99870 * 2 1 4 4 C 1.39158 * 120.06828 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07367 * 359.97438 * 4 3 2 6 6 C 1.42903 * 116.99587 * 179.72863 * 5 4 3 7 7 C 1.50701 * 109.46878 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.85056 * 25.34023 * 10 9 7 12 12 C 1.53784 * 113.61126 * 156.53132 * 10 9 7 13 13 C 1.53786 * 87.07801 * 139.98073 * 12 10 9 14 14 H 1.09004 * 113.61331 * 89.12262 * 13 12 10 15 15 C 1.53003 * 113.61179 * 219.93463 * 13 12 10 16 16 C 1.47204 * 109.46693 * 185.00321 * 15 13 12 17 17 N 9.79078 * 140.57452 * 332.15242 * 5 1 2 18 18 C 1.53787 * 113.61653 * 254.13757 * 10 9 7 19 19 C 1.38562 * 119.85085 * 179.72762 * 4 3 2 20 20 C 1.38251 * 120.00023 * 0.27042 * 19 4 3 21 21 N 1.48005 * 119.92581 * 180.02562 * 20 19 4 22 22 O 1.21796 * 120.00416 * 359.97438 * 21 20 19 23 23 O 1.21798 * 119.99717 * 180.02562 * 21 20 19 24 24 C 1.38250 * 120.14258 * 359.97438 * 20 19 4 25 25 C 1.50701 * 119.92404 * 180.02562 * 24 20 19 26 26 O 1.42900 * 109.47213 * 74.99909 * 25 24 20 27 27 Si 1.86295 * 109.47211 * 195.00131 * 25 24 20 28 28 C 1.38234 * 120.15167 * 0.02562 * 24 20 19 29 29 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46964 * 299.99907 * 1 2 3 31 31 H 1.08998 * 109.47234 * 59.99942 * 1 2 3 32 32 H 1.09002 * 109.47382 * 60.00075 * 6 5 4 33 33 H 1.09001 * 109.46938 * 300.00061 * 6 5 4 34 34 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 35 35 H 1.08998 * 113.61799 * 254.52676 * 12 10 9 36 36 H 1.09002 * 113.61278 * 25.35275 * 12 10 9 37 37 H 1.09004 * 109.47385 * 304.99895 * 15 13 12 38 38 H 1.08994 * 109.47258 * 65.00296 * 15 13 12 39 39 H 1.08995 * 113.61076 * 334.57310 * 18 10 9 40 40 H 1.08995 * 113.61025 * 105.47189 * 18 10 9 41 41 H 1.07999 * 120.00493 * 180.25096 * 19 4 3 42 42 H 1.09005 * 109.47345 * 315.00241 * 25 24 20 43 43 H 0.96705 * 113.99964 * 60.00028 * 26 25 24 44 44 H 1.48497 * 110.00355 * 58.68233 * 27 25 24 45 45 H 1.48506 * 110.00231 * 180.02562 * 27 25 24 46 46 H 1.08001 * 120.00702 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3006 -0.0071 7 6 6.2519 -1.0583 -0.0068 8 8 5.5669 -2.0592 -0.0018 9 7 7.5957 -1.1613 -0.0129 10 6 8.2290 -2.4823 -0.0131 11 1 7.5913 -3.2573 -0.4383 12 6 9.6581 -2.4801 -0.5811 13 6 10.0214 -3.4665 0.5414 14 1 9.8742 -4.5116 0.2689 15 6 11.3919 -3.2034 1.1687 16 6 11.6977 -4.2644 2.1422 17 7 11.9317 -5.0693 2.9231 18 6 8.8491 -2.8684 1.3402 19 6 4.0603 2.5233 -0.0062 20 6 3.3030 3.6798 -0.0057 21 7 3.9716 5.0003 -0.0124 22 8 5.1877 5.0671 -0.0179 23 8 3.3056 6.0200 -0.0115 24 6 1.9225 3.6057 -0.0001 25 6 1.1017 4.8696 -0.0001 26 8 1.1296 5.4556 -1.3032 27 14 -0.6576 4.4676 0.4625 28 6 1.2933 2.3748 0.0056 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 5.9104 0.8529 0.8799 33 1 5.9026 0.8479 -0.9000 34 1 8.1434 -0.3608 -0.0172 35 1 9.7316 -2.9095 -1.5803 36 1 10.1601 -1.5163 -0.4966 37 1 12.1532 -3.1958 0.3885 38 1 11.3806 -2.2382 1.6748 39 1 9.1299 -2.0113 1.9522 40 1 8.2702 -3.6107 1.8897 41 1 5.1386 2.5840 -0.0108 42 1 1.5161 5.5720 0.7230 43 1 0.7749 4.8850 -1.9987 44 1 -0.6971 3.8285 1.8023 45 1 -1.4776 5.7057 0.4655 46 1 0.2147 2.3196 0.0096 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16663504_4549636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:33:32 Heat of formation + Delta-G solvation = -48.770915 kcal Electronic energy + Delta-G solvation = -34028.337812 eV Core-core repulsion = 29083.771504 eV Total energy + Delta-G solvation = -4944.566308 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.140 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.38758 -42.09994 -41.26655 -40.12876 -39.32622 -39.06931 -37.72019 -37.29126 -37.11049 -34.86124 -32.66524 -32.54725 -31.32102 -29.60853 -28.71699 -27.90000 -26.60970 -25.86711 -24.51182 -23.60966 -23.12839 -21.73992 -20.75139 -20.64680 -19.81920 -19.49372 -18.78270 -18.70323 -18.63823 -18.21044 -17.71777 -17.64082 -17.35793 -16.88483 -16.83497 -16.38219 -16.25036 -16.07440 -15.74847 -15.64511 -15.20911 -15.11888 -14.81923 -14.43493 -14.36309 -13.95907 -13.90538 -13.85668 -13.52315 -13.44058 -13.29677 -13.01554 -12.87398 -12.66064 -12.52426 -12.45304 -12.42493 -12.31488 -12.25568 -12.21184 -12.01182 -11.76932 -11.53739 -11.25784 -10.96775 -10.52649 -10.44678 -10.07454 -9.47434 -5.13356 -1.34942 -0.41926 0.17869 0.31912 1.13382 1.29782 1.42845 1.57517 1.77922 1.82464 1.90799 1.91406 1.94029 2.42178 2.99283 3.08484 3.19723 3.29131 3.48040 3.52161 3.56362 3.60436 3.71864 3.87108 3.91163 3.95254 3.96037 4.01938 4.07872 4.12487 4.23657 4.38913 4.39650 4.42052 4.56029 4.57884 4.74728 4.81139 4.82292 4.87310 4.92835 4.97213 5.08911 5.20595 5.26771 5.30676 5.57452 5.66414 6.07866 6.47393 6.48603 6.67774 6.72264 7.15632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.170 3.830 4 C 0.101 3.899 5 O -0.292 6.292 6 C 0.025 3.975 7 C 0.514 3.486 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.111 3.889 11 H 0.088 0.912 12 C -0.113 4.113 13 C -0.101 4.101 14 H 0.091 0.909 15 C -0.009 4.009 16 C 0.231 3.769 17 N -0.522 5.522 18 C -0.155 4.155 19 C -0.109 4.109 20 C -0.046 4.046 21 N 0.036 4.964 22 O -0.182 6.182 23 O -0.169 6.169 24 C -0.041 4.041 25 C -0.090 4.090 26 O -0.536 6.536 27 Si 0.785 3.215 28 C -0.163 4.163 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.424 0.576 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.185 0.815 42 H 0.115 0.885 43 H 0.393 0.607 44 H -0.272 1.272 45 H -0.291 1.291 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 0.615 -5.491 5.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.219 6.219 3 C 0.121 3.879 4 C 0.054 3.946 5 O -0.204 6.204 6 C -0.053 4.053 7 C 0.300 3.700 8 O -0.449 6.449 9 N -0.350 5.350 10 C 0.007 3.993 11 H 0.106 0.894 12 C -0.151 4.151 13 C -0.122 4.122 14 H 0.109 0.891 15 C -0.048 4.048 16 C -0.085 4.085 17 N -0.201 5.201 18 C -0.194 4.194 19 C -0.128 4.128 20 C -0.130 4.130 21 N 0.549 4.451 22 O -0.394 6.394 23 O -0.382 6.382 24 C -0.043 4.043 25 C -0.199 4.199 26 O -0.343 6.343 27 Si 0.688 3.312 28 C -0.182 4.182 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.202 0.798 42 H 0.132 0.868 43 H 0.242 0.758 44 H -0.199 1.199 45 H -0.218 1.218 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.197 -1.708 -3.437 4.422 hybrid contribution 0.908 1.184 0.263 1.515 sum -1.289 -0.525 -3.173 3.465 Atomic orbital electron populations 1.23804 0.74736 1.07027 1.04168 1.86334 1.24820 1.24555 1.86214 1.18695 0.89237 0.86349 0.93628 1.17968 0.88802 0.85170 1.02710 1.86310 1.18659 1.26778 1.88686 1.22966 0.78680 0.96312 1.07307 1.20376 0.83527 0.90238 0.75840 1.90785 1.64138 1.39946 1.50079 1.45673 1.04827 1.10397 1.74080 1.22561 0.94080 0.84806 0.97885 0.89371 1.23358 0.91971 1.01236 0.98539 1.22279 0.92207 1.00515 0.97150 0.89067 1.19712 0.98535 0.92404 0.94181 1.30613 0.90964 0.93772 0.93119 1.81727 1.11605 1.13777 1.12981 1.23738 0.97135 1.01527 0.96991 1.20911 1.03061 0.88048 1.00830 1.20560 0.92738 0.81955 1.17768 1.43713 1.00829 1.03431 0.97163 1.94494 0.96494 1.94107 1.54310 1.94582 1.64429 1.25409 1.53767 1.20210 0.91127 0.97606 0.95347 1.25744 1.10487 0.92829 0.90792 1.86670 1.87005 1.44619 1.15994 0.94403 0.71916 0.82165 0.82758 1.21074 1.01753 0.88130 1.07226 0.86147 0.90242 0.88807 0.85517 0.85209 0.73700 0.89349 0.85455 0.83587 0.84073 0.87288 0.93466 0.79767 0.86803 0.75803 1.19855 1.21802 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 0.25 10.28 -79.66 -0.82 -0.57 16 3 C 0.17 -0.30 6.70 22.57 0.15 -0.15 16 4 C 0.10 -0.04 6.70 22.57 0.15 0.11 16 5 O -0.29 -0.62 9.45 -67.08 -0.63 -1.26 16 6 C 0.02 -0.15 5.22 71.24 0.37 0.22 16 7 C 0.51 -0.41 7.91 87.66 0.69 0.28 16 8 O -0.57 -6.49 16.12 16.01 0.26 -6.24 16 9 N -0.70 6.21 5.36 -440.02 -2.36 3.85 16 10 C 0.11 -0.81 4.21 45.52 0.19 -0.62 16 11 H 0.09 -0.06 7.50 -2.39 -0.02 -0.07 16 12 C -0.11 1.67 7.39 31.12 0.23 1.90 16 13 C -0.10 1.17 3.61 -10.21 -0.04 1.13 16 14 H 0.09 -0.78 8.12 -2.38 -0.02 -0.80 16 15 C -0.01 0.12 5.54 28.79 0.16 0.28 16 16 C 0.23 -0.22 15.45 89.33 1.38 1.16 16 17 N -0.52 -4.95 18.60 20.13 0.37 -4.57 16 18 C -0.16 1.20 7.45 31.18 0.23 1.43 16 19 C -0.11 0.20 8.54 22.35 0.19 0.39 16 20 C -0.05 -0.11 6.85 36.38 0.25 0.14 16 21 N 0.04 0.30 4.45 -46.46 -0.21 0.10 16 22 O -0.18 -1.69 18.44 18.89 0.35 -1.35 16 23 O -0.17 -2.05 14.62 25.10 0.37 -1.68 16 24 C -0.04 0.05 5.26 -19.86 -0.10 -0.05 16 25 C -0.09 0.04 1.74 71.24 0.12 0.16 16 26 O -0.54 -0.34 11.80 -129.63 -1.53 -1.87 16 27 Si 0.79 -4.38 29.91 68.60 2.05 -2.33 16 28 C -0.16 0.95 7.64 22.35 0.17 1.12 16 29 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 30 H 0.08 -1.05 7.65 -2.39 -0.02 -1.07 16 31 H 0.09 -1.45 7.67 -2.39 -0.02 -1.47 16 32 H 0.13 -1.53 7.66 -2.39 -0.02 -1.55 16 33 H 0.13 -1.63 7.66 -2.39 -0.02 -1.65 16 34 H 0.42 -7.28 8.71 -92.71 -0.81 -8.09 16 35 H 0.09 -1.27 8.14 -2.39 -0.02 -1.29 16 36 H 0.13 -2.62 8.07 -2.39 -0.02 -2.64 16 37 H 0.15 -2.78 8.14 -2.39 -0.02 -2.80 16 38 H 0.14 -2.67 7.86 -2.39 -0.02 -2.69 16 39 H 0.11 -1.22 7.91 -2.39 -0.02 -1.24 16 40 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.19 -1.25 5.85 -2.91 -0.02 -1.27 16 42 H 0.11 0.51 6.07 -2.38 -0.01 0.49 16 43 H 0.39 -3.68 8.70 -74.05 -0.64 -4.32 16 44 H -0.27 0.57 7.11 99.48 0.71 1.28 16 45 H -0.29 -0.74 7.11 99.48 0.71 -0.04 16 46 H 0.19 -2.48 3.36 -2.91 -0.01 -2.49 16 Total: 0.00 -43.26 398.64 2.79 -40.47 By element: Atomic # 1 Polarization: -32.89 SS G_CDS: -0.32 Total: -33.21 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.27 Total: 8.66 kcal Atomic # 7 Polarization: 1.57 SS G_CDS: -2.19 Total: -0.62 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -2.01 Total: -12.96 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.33 kcal Total: -43.26 2.79 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_4549636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.306 kcal (2) G-P(sol) polarization free energy of solvation -43.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds