Wall clock time and date at job start Sun Mar 7 2021 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47301 * 73.74423 * 3 2 1 5 5 H 1.09005 * 112.90786 * 316.24453 * 4 3 2 6 6 C 1.53783 * 113.61773 * 184.99935 * 4 3 2 7 7 C 1.53777 * 87.08238 * 220.01671 * 6 4 3 8 8 H 1.08999 * 113.61220 * 270.79875 * 7 6 4 9 9 N 1.46497 * 113.61565 * 139.97844 * 7 6 4 10 10 C 1.34781 * 120.00443 * 154.99988 * 9 7 6 11 11 O 1.21279 * 119.99661 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00293 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47111 * 180.02562 * 12 10 9 14 14 C 1.35906 * 116.99988 * 180.02562 * 13 12 10 15 15 C 1.38705 * 120.05367 * 359.97438 * 14 13 12 16 16 C 1.38172 * 119.94206 * 180.02562 * 15 14 13 17 17 C 1.38250 * 120.05537 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.94350 * 180.02562 * 17 16 15 19 19 O 1.42907 * 109.46603 * 245.00489 * 18 17 16 20 20 Si 1.86298 * 109.47032 * 4.99792 * 18 17 16 21 21 C 1.38283 * 120.10927 * 0.28064 * 17 16 15 22 22 C 1.38123 * 120.05817 * 359.44714 * 21 17 16 23 23 N 1.48005 * 120.03145 * 180.29616 * 22 21 17 24 24 O 1.21801 * 119.99854 * 0.25682 * 23 22 21 25 25 O 1.21799 * 120.00318 * 180.25205 * 23 22 21 26 26 C 1.53778 * 113.61763 * 87.49789 * 4 3 2 27 27 H 1.09003 * 109.47403 * 313.74055 * 3 2 1 28 28 H 1.09000 * 109.46961 * 193.74407 * 3 2 1 29 29 H 1.09004 * 113.61666 * 105.46630 * 6 4 3 30 30 H 1.08998 * 113.68882 * 334.57792 * 6 4 3 31 31 H 0.97005 * 119.99894 * 335.00103 * 9 7 6 32 32 H 1.09001 * 109.47546 * 59.99580 * 12 10 9 33 33 H 1.09001 * 109.46985 * 300.00024 * 12 10 9 34 34 H 1.08000 * 120.03287 * 359.97438 * 15 14 13 35 35 H 1.07995 * 119.97216 * 179.97438 * 16 15 14 36 36 H 1.08996 * 109.47117 * 125.00402 * 18 17 16 37 37 H 0.96697 * 114.00527 * 59.99993 * 19 18 17 38 38 H 1.48506 * 109.99834 * 58.68765 * 20 18 17 39 39 H 1.48502 * 110.00011 * 180.02562 * 20 18 17 40 40 H 1.07998 * 119.97325 * 179.70285 * 21 17 16 41 41 H 1.08996 * 113.61146 * 25.43612 * 26 4 3 42 42 H 1.08997 * 113.61822 * 254.53309 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4029 -1.3848 5 1 2.5763 -1.2494 -1.8065 6 6 4.6470 -0.5517 -1.4588 7 6 4.5667 0.1196 -2.8400 8 1 4.4222 -0.5842 -3.6597 9 7 5.6498 1.0729 -3.0930 10 6 6.0200 1.3521 -4.3586 11 8 5.4561 0.8144 -5.2879 12 6 7.1346 2.3324 -4.6188 13 8 7.3384 2.4590 -6.0275 14 6 8.3156 3.3108 -6.4354 15 6 9.0625 4.0106 -5.4993 16 6 10.0551 4.8764 -5.9167 17 6 10.3045 5.0451 -7.2660 18 6 11.3881 5.9896 -7.7183 19 8 10.8028 7.0754 -8.4399 20 14 12.2967 6.6499 -6.2320 21 6 9.5578 4.3524 -8.2013 22 6 8.5682 3.4815 -7.7891 23 7 7.7737 2.7355 -8.7906 24 8 7.9956 2.8860 -9.9787 25 8 6.8981 1.9711 -8.4266 26 6 3.2650 0.7802 -2.3561 27 1 2.9717 -0.7097 0.7425 28 1 2.9708 0.9991 0.2442 29 1 4.9836 -1.5878 -1.4957 30 1 5.1811 0.0406 -0.7159 31 1 6.1007 1.5033 -2.3497 32 1 8.0508 1.9740 -4.1495 33 1 6.8688 3.3038 -4.2018 34 1 8.8678 3.8796 -4.4451 35 1 10.6366 5.4219 -5.1882 36 1 12.0866 5.4583 -8.3648 37 1 10.1692 7.5936 -7.9251 38 1 12.8832 5.5280 -5.4555 39 1 13.3677 7.5832 -6.6646 40 1 9.7513 4.4894 -9.2550 41 1 3.4201 1.7373 -1.8581 42 1 2.4860 0.8194 -3.1174 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16663504_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:33:36 Heat of formation + Delta-G solvation = -21.386792 kcal Electronic energy + Delta-G solvation = -29303.441721 eV Core-core repulsion = 24834.282689 eV Total energy + Delta-G solvation = -4469.159032 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.28586 -41.77366 -41.06308 -39.90901 -39.09500 -37.59132 -37.47349 -37.32397 -34.83274 -33.45091 -32.25021 -31.33179 -29.55489 -27.80814 -26.58676 -26.56828 -24.65364 -23.66985 -22.76982 -21.68729 -20.62939 -20.47780 -19.76658 -19.17496 -18.69517 -18.63190 -18.28686 -18.05748 -17.52962 -17.24781 -16.82875 -16.33913 -16.24577 -16.04943 -15.80213 -15.57062 -15.29234 -15.16094 -14.68149 -14.47307 -14.00838 -13.95703 -13.84804 -13.75477 -13.47863 -13.26765 -13.20034 -12.86818 -12.70582 -12.51532 -12.34225 -12.27762 -12.22246 -12.19042 -11.99887 -11.94035 -11.51358 -11.23408 -10.90044 -10.81292 -10.54182 -10.02254 -9.77832 -4.98932 -1.30707 -0.22429 0.16683 0.36667 1.26007 1.30003 1.51377 1.67004 1.85052 1.90509 2.04805 2.06770 2.42126 3.12300 3.14024 3.29159 3.41892 3.54413 3.56781 3.68847 3.73081 3.75716 3.80752 3.90946 3.97034 3.99050 4.09520 4.29724 4.36816 4.41810 4.53411 4.60662 4.65431 4.83792 4.86040 4.89900 4.95999 4.99780 5.09352 5.12450 5.20733 5.23174 5.34156 5.66222 5.80602 6.41676 6.55979 6.70628 6.75316 7.26292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.232 3.768 3 C -0.009 4.009 4 C -0.103 4.103 5 H 0.086 0.914 6 C -0.111 4.111 7 C 0.110 3.890 8 H 0.081 0.919 9 N -0.693 5.693 10 C 0.505 3.495 11 O -0.572 6.572 12 C 0.023 3.977 13 O -0.294 6.294 14 C 0.194 3.806 15 C -0.187 4.187 16 C -0.002 4.002 17 C -0.151 4.151 18 C -0.084 4.084 19 O -0.558 6.558 20 Si 0.802 3.198 21 C -0.005 4.005 22 C -0.106 4.106 23 N 0.034 4.966 24 O -0.207 6.207 25 O -0.173 6.173 26 C -0.154 4.154 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.426 0.574 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.211 0.789 35 H 0.192 0.808 36 H 0.107 0.893 37 H 0.398 0.602 38 H -0.265 1.265 39 H -0.307 1.307 40 H 0.147 0.853 41 H 0.115 0.885 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 6.262 16.249 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.084 4.084 3 C -0.049 4.049 4 C -0.124 4.124 5 H 0.104 0.896 6 C -0.149 4.149 7 C 0.005 3.995 8 H 0.099 0.901 9 N -0.348 5.348 10 C 0.291 3.709 11 O -0.450 6.450 12 C -0.054 4.054 13 O -0.204 6.204 14 C 0.144 3.856 15 C -0.205 4.205 16 C -0.020 4.020 17 C -0.153 4.153 18 C -0.192 4.192 19 O -0.367 6.367 20 Si 0.706 3.294 21 C -0.024 4.024 22 C -0.191 4.191 23 N 0.544 4.456 24 O -0.413 6.413 25 O -0.387 6.387 26 C -0.192 4.192 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.266 0.734 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.227 0.773 35 H 0.209 0.791 36 H 0.125 0.875 37 H 0.248 0.752 38 H -0.191 1.191 39 H -0.236 1.236 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.238 5.909 15.842 19.267 hybrid contribution -0.292 -0.825 -1.657 1.874 sum 8.946 5.084 14.185 17.524 Atomic orbital electron populations 1.81327 1.16109 1.11586 1.11021 1.30230 0.96304 0.90892 0.90978 1.19711 0.77970 1.08091 0.99084 1.22245 0.97584 0.98643 0.93921 0.89604 1.23354 0.94079 1.02759 0.94694 1.22505 0.86689 0.91734 0.98572 0.90069 1.45592 1.37321 1.45172 1.06684 1.20611 0.84048 0.82533 0.83753 1.90856 1.56281 1.52889 1.44993 1.23187 1.00351 1.02497 0.79342 1.86480 1.49373 1.57752 1.26781 1.18982 0.87723 0.88575 0.90274 1.21849 0.97844 0.99439 1.01367 1.21733 0.93073 0.92537 0.94610 1.20458 1.00240 1.01156 0.93437 1.25503 0.97046 0.88677 1.07947 1.86536 1.63255 1.43330 1.43564 0.93854 0.80298 0.79145 0.76141 1.20843 0.89412 0.89358 1.02830 1.20885 1.04298 1.07905 0.86053 1.43933 1.00141 0.99623 1.01945 1.94504 1.74098 1.71319 1.01407 1.94677 1.25546 1.32971 1.85519 1.23712 0.96887 0.99723 0.98905 0.83687 0.83738 0.89759 0.84946 0.73418 0.83690 0.83519 0.77273 0.79136 0.87550 0.75164 1.19082 1.23573 0.83521 0.86710 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.72 18.54 20.01 0.37 -4.35 16 2 C 0.23 -0.34 15.42 89.44 1.38 1.04 16 3 C -0.01 0.14 5.54 28.79 0.16 0.29 16 4 C -0.10 1.23 3.61 -10.27 -0.04 1.19 16 5 H 0.09 -0.67 8.12 -2.38 -0.02 -0.69 16 6 C -0.11 1.73 7.39 31.12 0.23 1.96 16 7 C 0.11 -0.83 4.24 45.52 0.19 -0.64 16 8 H 0.08 0.06 7.46 -2.39 -0.02 0.04 16 9 N -0.69 7.51 5.35 -440.05 -2.36 5.15 16 10 C 0.50 -0.83 7.91 87.65 0.69 -0.14 16 11 O -0.57 -7.76 16.10 16.01 0.26 -7.50 16 12 C 0.02 -0.23 5.22 71.23 0.37 0.14 16 13 O -0.29 -0.86 7.68 -63.47 -0.49 -1.35 16 14 C 0.19 -0.17 6.67 22.51 0.15 -0.02 16 15 C -0.19 2.40 9.04 22.37 0.20 2.61 16 16 C 0.00 0.03 8.66 22.26 0.19 0.22 16 17 C -0.15 0.99 5.35 -19.85 -0.11 0.89 16 18 C -0.08 0.56 2.80 71.24 0.20 0.76 16 19 O -0.56 2.27 12.83 -148.98 -1.91 0.36 16 20 Si 0.80 -8.92 29.80 68.60 2.04 -6.87 16 21 C -0.01 -0.01 9.18 22.25 0.20 0.20 16 22 C -0.11 -0.68 6.87 36.47 0.25 -0.43 16 23 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 24 O -0.21 -3.90 18.45 18.88 0.35 -3.56 16 25 O -0.17 -3.72 17.24 25.61 0.44 -3.28 16 26 C -0.15 1.27 7.43 31.12 0.23 1.50 16 27 H 0.15 -2.89 8.14 -2.39 -0.02 -2.91 16 28 H 0.14 -2.99 7.84 -2.39 -0.02 -3.01 16 29 H 0.08 -1.21 8.14 -2.38 -0.02 -1.23 16 30 H 0.13 -3.00 8.08 -2.39 -0.02 -3.02 16 31 H 0.43 -8.92 8.73 -92.70 -0.81 -9.73 16 32 H 0.15 -2.76 7.66 -2.39 -0.02 -2.78 16 33 H 0.15 -2.84 7.66 -2.39 -0.02 -2.85 16 34 H 0.21 -4.97 6.30 -2.91 -0.02 -4.99 16 35 H 0.19 -4.15 4.90 -2.91 -0.01 -4.17 16 36 H 0.11 -0.47 7.96 -2.39 -0.02 -0.49 16 37 H 0.40 -5.20 8.70 -74.06 -0.64 -5.85 16 38 H -0.26 2.34 7.11 99.48 0.71 3.05 16 39 H -0.31 0.32 7.11 99.48 0.71 1.02 16 40 H 0.15 0.57 7.61 -2.91 -0.02 0.55 16 41 H 0.11 -1.50 7.90 -2.39 -0.02 -1.52 16 42 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -52.61 373.34 2.51 -50.10 By element: Atomic # 1 Polarization: -38.34 SS G_CDS: -0.30 Total: -38.64 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.31 Total: 9.58 kcal Atomic # 7 Polarization: 3.35 SS G_CDS: -2.19 Total: 1.16 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.35 Total: -15.33 kcal Atomic # 14 Polarization: -8.92 SS G_CDS: 2.04 Total: -6.87 kcal Total: -52.61 2.51 -50.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16663504_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.711 kcal (2) G-P(sol) polarization free energy of solvation -52.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds