Wall clock time and date at job start Sun Mar 7 2021 08:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86295 * 109.47341 * 2 1 4 4 C 1.86299 * 109.47416 * 239.99754 * 2 1 3 5 5 C 1.86806 * 109.47119 * 119.99991 * 2 1 3 6 6 C 1.38223 * 119.54228 * 89.99480 * 5 2 1 7 7 C 1.38546 * 119.23731 * 179.97438 * 6 5 2 8 8 C 1.39231 * 118.36244 * 0.02562 * 7 6 5 9 9 N 1.39957 * 120.49001 * 179.97438 * 8 7 6 10 10 C 1.34784 * 120.00045 * 34.97103 * 9 8 7 11 11 O 1.21288 * 119.99674 * 355.04885 * 10 9 8 12 12 C 1.50689 * 120.00080 * 175.32080 * 10 9 8 13 13 N 1.46497 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.36838 * 125.06277 * 265.02371 * 13 12 10 15 15 C 1.34232 * 109.93879 * 179.97438 * 14 13 12 16 16 C 1.50704 * 126.50155 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.46864 * 104.97316 * 16 15 14 18 18 Si 1.86296 * 109.46715 * 344.97296 * 16 15 14 19 19 H 1.48502 * 109.47254 * 180.02562 * 18 16 15 20 20 H 1.48498 * 109.47300 * 300.00165 * 18 16 15 21 21 H 1.48503 * 109.47165 * 60.00066 * 18 16 15 22 22 C 1.46492 * 107.00059 * 0.02562 * 15 14 13 23 23 C 1.39592 * 134.03843 * 180.02562 * 22 15 14 24 24 C 1.36663 * 119.76201 * 179.97438 * 23 22 15 25 25 C 1.38787 * 120.53078 * 0.02562 * 24 23 22 26 26 C 1.37779 * 120.66612 * 359.97438 * 25 24 23 27 27 C 1.37696 * 125.06485 * 84.72145 * 13 12 10 28 28 C 1.38889 * 119.02345 * 0.26696 * 8 7 6 29 29 N 1.31790 * 120.65713 * 359.41437 * 28 8 7 30 30 H 1.08996 * 109.47057 * 300.00132 * 1 2 3 31 31 H 1.08995 * 109.46770 * 60.00532 * 1 2 3 32 32 H 1.09002 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47556 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46936 * 299.99904 * 3 2 1 35 35 H 1.09002 * 109.47322 * 59.99523 * 3 2 1 36 36 H 1.09002 * 109.47178 * 300.00029 * 4 2 1 37 37 H 1.09001 * 109.46945 * 60.00044 * 4 2 1 38 38 H 1.09000 * 109.47284 * 180.02562 * 4 2 1 39 39 H 1.08004 * 120.38008 * 359.97438 * 6 5 2 40 40 H 1.08005 * 120.81539 * 179.97438 * 7 6 5 41 41 H 0.96993 * 120.00262 * 214.96984 * 9 8 7 42 42 H 1.09005 * 109.46924 * 300.00015 * 12 10 9 43 43 H 1.09001 * 109.47257 * 59.99974 * 12 10 9 44 44 H 1.07997 * 125.02923 * 359.96428 * 14 13 12 45 45 H 1.08997 * 109.46724 * 224.97362 * 16 15 14 46 46 H 0.96700 * 113.99356 * 180.02562 * 17 16 15 47 47 H 1.07996 * 120.12183 * 359.97438 * 23 22 15 48 48 H 1.08000 * 119.73327 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.66246 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.11339 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.67015 * 179.71014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7128 -2.2433 1.4805 7 6 3.1751 -2.8899 2.6152 8 6 3.3935 -2.1346 3.7643 9 7 3.8596 -2.7423 4.9357 10 6 4.7282 -3.7702 4.8619 11 8 5.0367 -4.2272 3.7816 12 6 5.3114 -4.3557 6.1220 13 7 6.2201 -5.4516 5.7763 14 6 5.8775 -6.7759 5.7424 15 6 6.9408 -7.5149 5.3885 16 6 6.9799 -9.0137 5.2356 17 8 6.9947 -9.3505 3.8470 18 14 5.4740 -9.7594 6.0397 19 1 5.5127 -11.2363 5.8897 20 1 5.4586 -9.4092 7.4827 21 1 4.2502 -9.2271 5.3882 22 6 8.0559 -6.5883 5.1792 23 6 9.3921 -6.7462 4.8074 24 6 10.1995 -5.6492 4.6959 25 6 9.7018 -4.3788 4.9500 26 6 8.3862 -4.2001 5.3183 27 6 7.5447 -5.3018 5.4312 28 6 3.1361 -0.7701 3.7327 29 7 2.7026 -0.1934 2.6298 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1207 2.2703 0.8899 36 1 2.1208 -1.9060 -1.5210 37 1 2.1208 -0.3645 -2.4111 38 1 3.5741 -0.8787 -1.5208 39 1 2.5319 -2.7976 0.5714 40 1 3.3607 -3.9539 2.6088 41 1 3.5575 -2.4238 5.8006 42 1 5.8617 -3.5840 6.6604 43 1 4.5072 -4.7353 6.7524 44 1 4.8968 -7.1685 5.9672 45 1 7.8782 -9.4042 5.7139 46 1 7.0195 -10.3015 3.6733 47 1 9.7864 -7.7317 4.6085 48 1 11.2331 -5.7719 4.4078 49 1 10.3522 -3.5216 4.8573 50 1 8.0084 -3.2075 5.5143 51 1 3.2974 -0.1750 4.6194 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16733946_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:52:55 Heat of formation + Delta-G solvation = 1.039088 kcal Electronic energy + Delta-G solvation = -32104.750433 eV Core-core repulsion = 27900.413815 eV Total energy + Delta-G solvation = -4204.336619 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.158 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.65809 -41.74427 -40.18883 -38.09937 -37.65627 -36.29841 -34.32342 -33.18988 -31.84947 -30.88458 -30.31821 -29.44054 -28.80217 -28.32636 -28.27717 -25.91077 -24.80690 -24.23366 -23.64967 -22.64736 -21.68989 -20.60689 -19.36075 -18.55850 -18.38784 -17.97238 -17.74488 -17.45499 -17.12985 -16.48207 -16.29442 -15.94788 -15.87646 -15.23732 -15.09640 -14.95623 -14.83143 -14.76749 -14.56485 -14.53813 -14.24498 -14.08027 -13.79720 -13.76947 -13.65284 -13.53316 -13.36478 -13.12692 -13.11930 -12.97282 -12.74761 -12.61621 -12.50903 -12.15017 -12.14043 -11.98344 -11.72070 -11.54800 -11.47343 -10.87059 -10.78576 -10.68995 -10.62142 -10.20708 -10.19289 -9.41952 -9.20579 -8.68276 -0.12781 0.09595 0.24741 0.59383 1.18320 1.20190 1.28661 1.47353 1.53248 1.63678 1.66900 1.91503 1.96147 2.01886 2.06611 2.59163 2.84590 2.90565 3.33930 3.54741 3.60514 3.71486 3.75422 3.81546 3.82426 3.99696 4.02343 4.04875 4.20543 4.25705 4.27823 4.38587 4.54963 4.59804 4.66755 4.74484 4.75799 4.82847 4.83614 4.87011 4.87170 4.88798 4.89949 4.93912 4.98357 5.11316 5.14432 5.47786 5.57622 5.62688 5.64407 5.66783 5.69165 5.71111 5.71321 6.03603 6.16696 6.26022 6.83246 6.89379 6.94536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.155 2.845 3 C -0.455 4.455 4 C -0.462 4.462 5 C -0.193 4.193 6 C -0.143 4.143 7 C -0.110 4.110 8 C 0.094 3.906 9 N -0.650 5.650 10 C 0.490 3.510 11 O -0.547 6.547 12 C 0.093 3.907 13 N -0.469 5.469 14 C 0.060 3.940 15 C -0.180 4.180 16 C -0.055 4.055 17 O -0.570 6.570 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.249 1.249 21 H -0.266 1.266 22 C -0.115 4.115 23 C -0.083 4.083 24 C -0.153 4.153 25 C -0.106 4.106 26 C -0.137 4.137 27 C 0.090 3.910 28 C 0.057 3.943 29 N -0.449 5.449 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.128 0.872 41 H 0.435 0.565 42 H 0.153 0.847 43 H 0.169 0.831 44 H 0.189 0.811 45 H 0.080 0.920 46 H 0.393 0.607 47 H 0.126 0.874 48 H 0.140 0.860 49 H 0.146 0.854 50 H 0.131 0.869 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 0.663 4.885 5.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.340 2.660 3 C -0.563 4.563 4 C -0.570 4.570 5 C -0.366 4.366 6 C -0.162 4.162 7 C -0.138 4.138 8 C -0.003 4.003 9 N -0.299 5.299 10 C 0.277 3.723 11 O -0.423 6.423 12 C -0.031 4.031 13 N -0.152 5.152 14 C -0.065 4.065 15 C -0.187 4.187 16 C -0.164 4.164 17 O -0.378 6.378 18 Si 0.809 3.191 19 H -0.176 1.176 20 H -0.173 1.173 21 H -0.191 1.191 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.172 4.172 25 C -0.125 4.125 26 C -0.157 4.157 27 C -0.015 4.015 28 C -0.104 4.104 29 N -0.158 5.158 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.276 0.724 42 H 0.171 0.829 43 H 0.186 0.814 44 H 0.206 0.794 45 H 0.098 0.902 46 H 0.242 0.758 47 H 0.144 0.856 48 H 0.158 0.842 49 H 0.163 0.837 50 H 0.149 0.851 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.769 1.664 4.712 6.259 hybrid contribution 0.724 -1.449 0.255 1.640 sum -3.045 0.215 4.967 5.830 Atomic orbital electron populations 1.26188 1.20502 1.04769 1.04956 0.76973 0.65668 0.64273 0.59128 1.26166 1.05865 1.19581 1.04652 1.26288 1.06370 1.08680 1.15667 1.30912 1.00435 0.97069 1.08221 1.22448 0.97931 0.96794 0.99070 1.21843 0.97311 1.00915 0.93693 1.18917 0.99442 0.93386 0.88550 1.43261 1.44214 1.33684 1.08739 1.21856 0.78353 0.79610 0.92493 1.90818 1.60164 1.59832 1.31443 1.21968 0.96359 0.91198 0.93605 1.43358 1.07380 1.05583 1.58881 1.21898 0.99391 0.82238 1.02933 1.19880 0.93040 0.94328 1.11441 1.24249 1.11101 0.93439 0.87625 1.86531 1.97717 1.30347 1.23217 0.85225 0.75699 0.79336 0.78845 1.17624 1.17285 1.19078 1.19347 0.94774 0.92499 1.05339 1.20490 0.91669 0.99740 0.98292 1.20949 1.00831 0.92349 1.03041 1.21151 0.94637 0.98135 0.98584 1.20235 0.93605 0.96358 1.05507 1.18424 0.84658 0.95759 1.02636 1.23335 0.98286 0.89908 0.98828 1.68149 1.09608 1.39044 0.98957 0.91517 0.89779 0.91052 0.92062 0.90286 0.91269 0.90604 0.89633 0.91527 0.83021 0.85389 0.72417 0.82905 0.81370 0.79434 0.90196 0.75750 0.85564 0.84217 0.83666 0.85076 0.80215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.08 8.65 113.37 0.98 2.06 16 2 Si 1.16 -3.10 12.77 68.60 0.88 -2.22 16 3 C -0.46 0.11 8.65 113.37 0.98 1.09 16 4 C -0.46 1.25 8.52 113.37 0.97 2.21 16 5 C -0.19 -0.72 5.36 84.68 0.45 -0.27 16 6 C -0.14 -0.68 9.32 22.34 0.21 -0.47 16 7 C -0.11 -0.80 8.81 22.58 0.20 -0.60 16 8 C 0.09 0.30 6.32 38.24 0.24 0.54 16 9 N -0.65 2.41 5.35 -303.19 -1.62 0.79 16 10 C 0.49 0.42 7.76 87.65 0.68 1.10 16 11 O -0.55 -6.75 13.89 -3.05 -0.04 -6.79 16 12 C 0.09 -0.57 6.48 85.63 0.56 -0.02 16 13 N -0.47 -1.67 2.27 -520.01 -1.18 -2.85 16 14 C 0.06 0.27 9.89 83.00 0.82 1.09 16 15 C -0.18 -1.44 5.61 -18.63 -0.10 -1.54 16 16 C -0.05 -0.17 3.05 71.24 0.22 0.04 16 17 O -0.57 -3.13 12.86 -148.98 -1.92 -5.05 16 18 Si 0.99 -0.81 26.08 68.60 1.79 0.98 16 19 H -0.25 0.28 7.11 99.48 0.71 0.98 16 20 H -0.25 0.25 7.11 99.48 0.71 0.96 16 21 H -0.27 -0.41 7.03 99.48 0.70 0.29 16 22 C -0.12 -1.27 6.35 -20.20 -0.13 -1.39 16 23 C -0.08 -0.77 10.05 22.23 0.22 -0.55 16 24 C -0.15 -0.98 9.97 22.03 0.22 -0.76 16 25 C -0.11 -0.57 10.01 22.29 0.22 -0.35 16 26 C -0.14 -0.84 10.00 22.37 0.22 -0.62 16 27 C 0.09 0.77 6.80 39.03 0.27 1.04 16 28 C 0.06 0.13 11.12 84.86 0.94 1.08 16 29 N -0.45 -2.45 9.84 -88.74 -0.87 -3.33 16 30 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 34 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.07 0.09 7.96 -2.39 -0.02 0.07 16 36 H 0.07 -0.26 7.65 -2.39 -0.02 -0.28 16 37 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 39 H 0.15 0.06 7.38 -2.91 -0.02 0.04 16 40 H 0.13 1.34 6.31 -2.91 -0.02 1.32 16 41 H 0.44 -5.58 8.82 -92.71 -0.82 -6.40 16 42 H 0.15 -1.84 8.14 -2.38 -0.02 -1.86 16 43 H 0.17 -2.48 8.12 -2.39 -0.02 -2.50 16 44 H 0.19 -0.29 6.29 -2.91 -0.02 -0.31 16 45 H 0.08 0.03 7.96 -2.39 -0.02 0.01 16 46 H 0.39 -1.74 8.74 -74.06 -0.65 -2.39 16 47 H 0.13 0.85 8.06 -2.91 -0.02 0.83 16 48 H 0.14 0.26 8.06 -2.91 -0.02 0.23 16 49 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 50 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 51 H 0.18 -0.78 8.06 -2.91 -0.02 -0.81 16 Total: 0.00 -31.12 430.46 5.45 -25.67 By element: Atomic # 1 Polarization: -11.13 SS G_CDS: 0.24 Total: -10.89 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 8.17 Total: 3.68 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -3.68 Total: -5.38 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.96 Total: -11.84 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.67 Total: -1.24 kcal Total: -31.12 5.45 -25.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16733946_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds