Wall clock time and date at job start Sun Mar 7 2021 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47361 * 2 1 4 4 C 1.50704 * 109.47096 * 119.99593 * 2 1 3 5 5 C 1.38321 * 119.87700 * 64.99795 * 4 2 1 6 6 C 1.38016 * 120.12210 * 180.02562 * 5 4 2 7 7 C 1.39338 * 119.87841 * 0.02562 * 6 5 4 8 8 C 1.48392 * 120.12186 * 180.02562 * 7 6 5 9 9 C 1.39313 * 120.12138 * 56.46177 * 8 7 6 10 10 C 1.50706 * 120.06189 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.46966 * 79.89177 * 10 9 8 12 12 O 1.21285 * 119.99651 * 5.79286 * 11 10 9 13 13 N 1.34768 * 120.00242 * 185.79647 * 11 10 9 14 14 C 1.46497 * 120.00406 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47494 * 34.99163 * 14 13 11 16 16 C 1.53001 * 109.47414 * 154.99959 * 14 13 11 17 17 C 1.52998 * 109.47033 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.47147 * 299.99575 * 17 16 14 19 19 H 1.08998 * 109.46595 * 300.00414 * 18 17 16 20 20 C 1.52998 * 109.47147 * 179.97438 * 18 17 16 21 21 F 1.39906 * 109.46928 * 65.00212 * 20 18 17 22 22 C 1.53001 * 109.46807 * 60.00287 * 18 17 16 23 23 C 1.52998 * 109.47033 * 299.99783 * 22 18 17 24 24 C 1.38040 * 119.87599 * 179.72720 * 9 8 7 25 25 C 1.38303 * 120.12274 * 0.27685 * 24 9 8 26 26 C 1.38346 * 120.24102 * 359.97438 * 25 24 9 27 27 C 1.37998 * 120.12068 * 0.02562 * 26 25 24 28 28 C 1.39334 * 119.75738 * 0.26761 * 7 6 5 29 29 C 1.38018 * 119.87671 * 359.47778 * 28 7 6 30 30 H 0.96698 * 114.00678 * 300.00529 * 1 2 3 31 31 H 1.09002 * 109.47844 * 239.99577 * 2 1 3 32 32 H 1.48499 * 109.99834 * 299.99538 * 3 2 1 33 33 H 1.48494 * 109.99918 * 61.31323 * 3 2 1 34 34 H 1.08005 * 119.94089 * 0.02935 * 5 4 2 35 35 H 1.08005 * 120.06066 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47069 * 319.88997 * 10 9 8 37 37 H 1.09001 * 109.47051 * 199.88667 * 10 9 8 38 38 H 0.96999 * 120.00026 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.47346 * 59.99953 * 16 14 13 40 40 H 1.08998 * 109.46680 * 299.99793 * 16 14 13 41 41 H 1.09002 * 109.47342 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47637 * 59.99854 * 17 16 14 43 43 H 1.09000 * 109.46821 * 185.00101 * 20 18 17 44 44 H 1.08993 * 109.47611 * 305.00401 * 20 18 17 45 45 H 1.08998 * 109.47346 * 59.99862 * 22 18 17 46 46 H 1.08998 * 109.46680 * 180.02562 * 22 18 17 47 47 H 1.08999 * 109.47637 * 300.00146 * 23 22 18 48 48 H 1.09002 * 109.47342 * 179.97438 * 23 22 18 49 49 H 1.08001 * 119.93763 * 180.25278 * 24 9 8 50 50 H 1.07998 * 119.87801 * 179.97438 * 25 24 9 51 51 H 1.07996 * 119.93716 * 179.97438 * 26 25 24 52 52 H 1.08002 * 120.05860 * 179.97438 * 27 26 25 53 53 H 1.07994 * 120.06184 * 179.72004 * 28 7 6 54 54 H 1.08001 * 119.94443 * 180.22465 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6831 -2.0610 1.3961 6 6 2.1403 -2.7165 2.5213 7 6 2.8527 -2.0150 3.4918 8 6 3.3473 -2.7145 4.7035 9 6 4.1742 -3.8288 4.5789 10 6 4.5692 -4.3267 3.2124 11 6 5.6920 -3.4781 2.6738 12 8 6.1992 -2.6278 3.3743 13 7 6.1325 -3.6640 1.4138 14 6 7.2244 -2.8394 0.8903 15 1 7.9315 -2.6220 1.6908 16 6 7.9404 -3.5938 -0.2318 17 6 9.0811 -2.7328 -0.7780 18 6 8.5134 -1.4220 -1.3262 19 1 7.8064 -1.6391 -2.1269 20 6 9.6542 -0.5608 -1.8718 21 9 10.2366 -1.2004 -2.9714 22 6 7.7973 -0.6676 -0.2041 23 6 6.6566 -1.5286 0.3421 24 6 4.6359 -4.4722 5.7095 25 6 4.2746 -4.0160 6.9641 26 6 3.4495 -2.9131 7.0935 27 6 2.9821 -2.2622 5.9700 28 6 3.0946 -0.6532 3.3229 29 6 2.6373 -0.0089 2.1912 30 1 -0.3934 0.4417 0.7649 31 1 1.7925 -0.5139 -0.8899 32 1 1.5617 2.4678 -1.2085 33 1 1.5879 2.4586 1.2241 34 1 1.1305 -2.6037 0.6434 35 1 1.9455 -3.7710 2.6497 36 1 3.7125 -4.2645 2.5414 37 1 4.8995 -5.3630 3.2848 38 1 5.7270 -4.3442 0.8536 39 1 7.2333 -3.8111 -1.0324 40 1 8.3452 -4.5274 0.1588 41 1 9.5910 -3.2700 -1.5778 42 1 9.7882 -2.5158 0.0227 43 1 9.2621 0.4082 -2.1808 44 1 10.4052 -0.4179 -1.0950 45 1 8.5043 -0.4507 0.5966 46 1 7.3925 0.2659 -0.5948 47 1 5.9496 -1.7456 -0.4586 48 1 6.1467 -0.9914 1.1418 49 1 5.2803 -5.3337 5.6141 50 1 4.6378 -4.5227 7.8460 51 1 3.1701 -2.5613 8.0756 52 1 2.3378 -1.4015 6.0722 53 1 3.6424 -0.1038 4.0741 54 1 2.8274 1.0458 2.0574 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16769142_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:26:47 Heat of formation + Delta-G solvation = -78.368974 kcal Electronic energy + Delta-G solvation = -36494.628365 eV Core-core repulsion = 31890.066207 eV Total energy + Delta-G solvation = -4604.562159 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.189 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.51480 -41.54519 -40.65826 -39.76098 -38.95490 -37.68295 -35.44393 -34.31325 -33.46291 -31.99066 -31.81196 -31.59986 -30.71269 -28.73019 -26.66560 -26.19954 -24.04018 -23.71173 -23.45884 -22.96157 -22.16130 -21.64353 -21.30431 -20.72290 -18.64420 -18.13711 -17.87889 -17.41038 -17.03961 -16.79482 -16.69822 -16.57842 -16.43088 -16.23771 -16.18113 -15.87163 -15.56274 -15.47621 -15.06127 -14.94257 -14.83764 -14.67254 -14.47566 -14.25981 -14.09589 -14.04069 -13.67506 -13.48005 -13.38984 -13.18362 -13.13158 -13.09433 -12.88360 -12.39847 -12.33536 -12.31960 -12.06318 -12.03393 -11.84825 -11.75606 -11.64417 -11.47943 -11.28350 -11.14164 -10.81414 -10.62410 -10.17307 -9.95895 -9.93050 -9.73520 -9.21863 -4.97084 -0.09018 0.39350 0.41204 0.61513 1.27908 1.55091 1.73262 1.90569 2.24463 2.62624 2.88757 3.40221 3.53540 3.58128 3.65747 3.68638 3.70824 3.76241 3.90606 3.94289 3.99889 4.01388 4.08739 4.11795 4.17845 4.28079 4.32235 4.36902 4.37826 4.42090 4.50460 4.52086 4.54286 4.56483 4.56972 4.60412 4.62685 4.70036 4.83254 4.87556 4.89750 4.95269 4.98833 5.03053 5.09450 5.13452 5.19497 5.21935 5.26239 5.34994 5.40321 5.42073 5.48284 5.49105 5.53618 5.58185 5.63041 5.66477 5.94099 6.05477 6.45389 6.63627 7.35763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.073 4.073 3 Si 0.750 3.250 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.114 4.114 7 C -0.039 4.039 8 C -0.050 4.050 9 C -0.062 4.062 10 C -0.111 4.111 11 C 0.519 3.481 12 O -0.571 6.571 13 N -0.717 5.717 14 C 0.148 3.852 15 H 0.061 0.939 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.115 4.115 19 H 0.087 0.913 20 C 0.056 3.944 21 F -0.238 7.238 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.117 4.117 30 H 0.385 0.615 31 H 0.130 0.870 32 H -0.300 1.300 33 H -0.288 1.288 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.413 0.587 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.138 0.862 52 H 0.126 0.874 53 H 0.119 0.881 54 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -3.045 -1.064 3.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.183 4.183 3 Si 0.657 3.343 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.132 4.132 7 C -0.039 4.039 8 C -0.050 4.050 9 C -0.062 4.062 10 C -0.150 4.150 11 C 0.306 3.694 12 O -0.450 6.450 13 N -0.369 5.369 14 C 0.043 3.957 15 H 0.079 0.921 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.133 4.133 19 H 0.105 0.895 20 C 0.001 3.999 21 F -0.219 7.219 22 C -0.145 4.145 23 C -0.159 4.159 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.135 4.135 30 H 0.234 0.766 31 H 0.148 0.852 32 H -0.228 1.228 33 H -0.215 1.215 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.250 0.750 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.156 0.844 50 H 0.157 0.843 51 H 0.156 0.844 52 H 0.144 0.856 53 H 0.137 0.863 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.457 -1.941 -1.139 2.297 hybrid contribution -1.122 -0.187 0.622 1.297 sum -0.666 -2.128 -0.517 2.289 Atomic orbital electron populations 1.86573 1.18392 1.80243 1.50162 1.25078 0.83413 1.10933 0.98860 0.94189 0.90715 0.73155 0.76244 1.20307 0.99629 0.95071 0.96624 1.21069 0.98385 0.93708 0.97618 1.21379 0.97854 1.00588 0.93369 1.18843 0.97888 0.93309 0.93910 1.18735 0.98320 0.95324 0.92612 1.19462 0.96933 0.95037 0.94780 1.20936 0.98395 1.01034 0.94639 1.20736 0.83652 0.83469 0.81566 1.90719 1.59230 1.36051 1.58967 1.45975 1.37563 1.39541 1.13849 1.20925 0.88196 0.90875 0.95675 0.92068 1.21714 0.97887 0.98448 0.97384 1.21522 0.97565 0.95464 1.00564 1.21756 0.97070 0.95599 0.98917 0.89501 1.22290 0.95880 0.96142 0.85563 1.92732 1.86596 1.84716 1.57846 1.21430 0.97168 0.98728 0.97156 1.21803 0.98255 0.95339 1.00485 1.21238 0.99660 1.00689 0.92076 1.21473 0.97875 0.96879 0.98101 1.21354 0.97907 0.96140 0.99118 1.21350 1.00453 1.00273 0.91802 1.21193 0.99532 0.93891 0.97957 1.21068 0.98495 1.00007 0.93887 0.76556 0.85242 1.22791 1.21530 0.84426 0.84094 0.85931 0.85504 0.75014 0.89892 0.90952 0.91318 0.91872 0.89176 0.90058 0.91978 0.89783 0.90428 0.92959 0.84433 0.84275 0.84411 0.85553 0.86322 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.88 12.83 -148.98 -1.91 -2.79 16 2 C -0.07 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.75 -1.01 29.87 68.60 2.05 1.04 16 4 C -0.12 0.07 5.36 -19.82 -0.11 -0.03 16 5 C -0.09 0.11 9.67 22.24 0.21 0.32 16 6 C -0.11 0.07 7.84 22.48 0.18 0.25 16 7 C -0.04 -0.11 4.73 -20.04 -0.09 -0.21 16 8 C -0.05 -0.23 5.38 -20.04 -0.11 -0.33 16 9 C -0.06 -0.18 4.39 -19.65 -0.09 -0.27 16 10 C -0.11 0.26 5.30 29.10 0.15 0.42 16 11 C 0.52 1.14 7.56 87.66 0.66 1.80 16 12 O -0.57 -6.56 15.70 -3.04 -0.05 -6.61 16 13 N -0.72 2.43 5.08 -442.54 -2.25 0.19 16 14 C 0.15 -0.31 2.45 45.00 0.11 -0.20 16 15 H 0.06 0.23 7.58 -2.39 -0.02 0.21 16 16 C -0.12 0.63 5.39 30.59 0.16 0.79 16 17 C -0.11 0.42 5.12 30.60 0.16 0.58 16 18 C -0.11 0.53 2.49 -10.79 -0.03 0.51 16 19 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 20 C 0.06 -0.18 6.91 71.98 0.50 0.31 16 21 F -0.24 -0.90 17.04 44.97 0.77 -0.13 16 22 C -0.11 0.51 5.20 30.59 0.16 0.67 16 23 C -0.12 0.34 5.50 30.60 0.17 0.51 16 24 C -0.12 -0.30 9.66 22.24 0.21 -0.08 16 25 C -0.13 -0.30 10.04 22.31 0.22 -0.08 16 26 C -0.13 -0.38 10.03 22.24 0.22 -0.16 16 27 C -0.12 -0.54 9.62 22.48 0.22 -0.32 16 28 C -0.11 -0.37 9.62 22.48 0.22 -0.16 16 29 C -0.12 -0.08 8.65 22.24 0.19 0.11 16 30 H 0.39 -1.24 8.70 -74.06 -0.64 -1.88 16 31 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 32 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 33 H -0.29 -0.93 7.00 99.48 0.70 -0.24 16 34 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 35 H 0.14 -0.57 7.07 -2.91 -0.02 -0.59 16 36 H 0.12 -0.71 4.86 -2.39 -0.01 -0.72 16 37 H 0.13 -0.94 8.01 -2.39 -0.02 -0.96 16 38 H 0.41 -3.84 8.60 -92.71 -0.80 -4.64 16 39 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.07 -0.16 7.94 -2.39 -0.02 -0.18 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 49 H 0.14 -0.21 8.04 -2.91 -0.02 -0.24 16 50 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 51 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 52 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 53 H 0.12 0.50 8.06 -2.91 -0.02 0.48 16 54 H 0.13 -0.23 4.82 -2.91 -0.01 -0.24 16 Total: 0.00 -20.22 433.61 1.64 -18.58 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -0.49 Total: -15.01 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 3.53 Total: 4.74 kcal Atomic # 7 Polarization: 2.43 SS G_CDS: -2.25 Total: 0.19 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -1.96 Total: -9.40 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.77 Total: -0.13 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.05 Total: 1.04 kcal Total: -20.22 1.64 -18.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16769142_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.792 kcal (2) G-P(sol) polarization free energy of solvation -20.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds