Wall clock time and date at job start Sun Mar 7 2021 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37783 * 119.84787 * 2 1 4 4 C 1.39713 * 119.90511 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.18757 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99539 * 180.02562 * 5 4 3 7 7 N 1.34770 * 120.00312 * 359.97438 * 5 4 3 8 8 C 1.46500 * 120.00256 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46845 * 325.00694 * 8 7 5 10 10 C 1.53006 * 109.47249 * 84.99846 * 8 7 5 11 11 C 1.52997 * 109.47164 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46978 * 299.99874 * 11 10 8 13 13 H 1.08992 * 109.47056 * 300.00064 * 12 11 10 14 14 C 1.52997 * 109.46978 * 180.02562 * 12 11 10 15 15 F 1.39903 * 109.47485 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 12 11 10 17 17 C 1.52997 * 109.47473 * 205.00145 * 8 7 5 18 18 C 1.40132 * 119.61630 * 0.25438 * 4 3 2 19 19 O 1.35656 * 120.14952 * 179.72104 * 18 4 3 20 20 C 1.38714 * 119.69905 * 359.51293 * 18 4 3 21 21 C 1.50705 * 119.95380 * 180.20615 * 20 18 4 22 22 O 1.42900 * 109.47402 * 285.27914 * 21 20 18 23 23 Si 1.86300 * 109.46540 * 165.28052 * 21 20 18 24 24 C 1.38047 * 120.08360 * 0.48915 * 20 18 4 25 25 H 1.09002 * 109.47264 * 90.00154 * 1 2 3 26 26 H 1.09004 * 109.47393 * 209.99871 * 1 2 3 27 27 H 1.09002 * 109.47199 * 330.00090 * 1 2 3 28 28 H 1.07998 * 120.04739 * 0.02562 * 3 2 1 29 29 H 0.97005 * 120.00370 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47002 * 60.00085 * 10 8 7 31 31 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 32 32 H 1.09002 * 109.47045 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47375 * 59.99966 * 11 10 8 34 34 H 1.09001 * 109.47375 * 300.00092 * 14 12 11 35 35 H 1.09002 * 109.47045 * 60.00167 * 14 12 11 36 36 H 1.09004 * 109.47368 * 179.97438 * 16 12 11 37 37 H 1.09001 * 109.47372 * 59.99964 * 16 12 11 38 38 H 1.09002 * 109.47153 * 59.99757 * 17 8 7 39 39 H 1.09001 * 109.46832 * 299.99948 * 17 8 7 40 40 H 0.96701 * 113.99652 * 90.00316 * 19 18 4 41 41 H 1.08995 * 109.46951 * 45.28302 * 21 20 18 42 42 H 0.96698 * 114.00024 * 300.00020 * 22 21 20 43 43 H 1.48508 * 110.00036 * 180.02562 * 23 21 20 44 44 H 1.48502 * 110.00327 * 301.31708 * 23 21 20 45 45 H 1.08007 * 119.80105 * 179.76392 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1965 0.0005 5 6 4.3305 2.4725 0.0000 6 8 5.5464 2.4696 0.0000 7 7 3.6593 3.6412 -0.0016 8 6 4.3947 4.9082 -0.0027 9 1 5.3050 4.8005 0.5871 10 6 4.7601 5.2846 -1.4401 11 6 5.5287 6.6075 -1.4412 12 6 4.6542 7.7059 -0.8329 13 1 3.7440 7.8139 -1.4227 14 6 5.4225 9.0289 -0.8346 15 9 4.6228 10.0334 -0.2790 16 6 4.2889 7.3295 0.6043 17 6 3.5199 6.0063 0.6053 18 6 4.2836 -0.0211 -0.0043 19 8 5.6401 -0.0323 -0.0096 20 6 3.5770 -1.2147 0.0006 21 6 4.3173 -2.5274 0.0001 22 8 4.8554 -2.7704 -1.3012 23 14 3.1442 -3.9019 0.4535 24 6 2.1966 -1.2017 0.0001 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6511 2.1294 0.0004 29 1 2.6893 3.6435 -0.0020 30 1 3.8499 5.3923 -2.0300 31 1 5.3834 4.5023 -1.8732 32 1 5.7885 6.8759 -2.4652 33 1 6.4389 6.4995 -0.8513 34 1 6.3330 8.9212 -0.2450 35 1 5.6824 9.2968 -1.8587 36 1 3.6663 8.1121 1.0379 37 1 5.1992 7.2214 1.1942 38 1 3.2596 5.7381 1.6293 39 1 2.6097 6.1140 0.0154 40 1 6.0368 -0.0372 0.8723 41 1 5.1284 -2.4874 0.7271 42 1 4.1887 -2.8186 -1.9998 43 1 3.8621 -5.2019 0.4572 44 1 2.5534 -3.6448 1.7915 45 1 1.6509 -2.1338 0.0001 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16769142_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:27:21 Heat of formation + Delta-G solvation = -152.017849 kcal Electronic energy + Delta-G solvation = -27885.211910 eV Core-core repulsion = 23782.753704 eV Total energy + Delta-G solvation = -4102.458206 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.57143 -41.83255 -40.55566 -39.10954 -38.06548 -37.63201 -35.61187 -33.24261 -33.00310 -31.85129 -31.30523 -27.52437 -26.92566 -26.71324 -24.81015 -23.81696 -22.43449 -21.93372 -21.49782 -20.85260 -19.65960 -18.41088 -18.11191 -17.52022 -16.97488 -16.84860 -16.78506 -16.67810 -16.37648 -16.05813 -15.94308 -15.55250 -15.15135 -15.10198 -14.93822 -14.73114 -14.38231 -14.37115 -14.19195 -13.65532 -13.51274 -13.33903 -13.24717 -13.17038 -12.83815 -12.53266 -12.45931 -12.19806 -12.16471 -12.10556 -11.92473 -11.74892 -11.53400 -11.37909 -11.25651 -10.93137 -10.40828 -10.26911 -10.01498 -9.51014 -5.04703 -0.35602 0.06425 1.24932 1.62224 1.70565 1.93216 2.03567 2.55352 3.14989 3.39247 3.46027 3.50992 3.58777 3.61452 3.67908 3.80300 3.90944 4.00539 4.12169 4.18100 4.20209 4.25883 4.31148 4.33661 4.39586 4.45430 4.47806 4.51850 4.61064 4.73635 4.79823 4.83012 4.86269 4.93177 4.98567 5.02098 5.06609 5.10814 5.14792 5.18031 5.27535 5.30442 5.36393 5.42789 5.46956 5.68764 6.44706 6.67165 6.74718 7.14265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.182 4.182 5 C 0.555 3.445 6 O -0.565 6.565 7 N -0.711 5.711 8 C 0.147 3.853 9 H 0.065 0.935 10 C -0.123 4.123 11 C -0.106 4.106 12 C -0.115 4.115 13 H 0.088 0.912 14 C 0.057 3.943 15 F -0.235 7.235 16 C -0.113 4.113 17 C -0.116 4.116 18 C 0.158 3.842 19 O -0.491 6.491 20 C -0.160 4.160 21 C -0.076 4.076 22 O -0.555 6.555 23 Si 0.792 3.208 24 C -0.070 4.070 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.413 0.587 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.392 0.608 43 H -0.301 1.301 44 H -0.277 1.277 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -0.042 -0.456 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.186 4.186 5 C 0.343 3.657 6 O -0.444 6.444 7 N -0.363 5.363 8 C 0.043 3.957 9 H 0.083 0.917 10 C -0.162 4.162 11 C -0.145 4.145 12 C -0.134 4.134 13 H 0.106 0.894 14 C 0.002 3.998 15 F -0.217 7.217 16 C -0.151 4.151 17 C -0.154 4.154 18 C 0.112 3.888 19 O -0.303 6.303 20 C -0.161 4.161 21 C -0.184 4.184 22 O -0.363 6.363 23 Si 0.696 3.304 24 C -0.088 4.088 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.176 0.824 29 H 0.251 0.749 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.257 0.743 41 H 0.113 0.887 42 H 0.242 0.758 43 H -0.229 1.229 44 H -0.203 1.203 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.229 -0.609 -0.146 8.252 hybrid contribution 0.888 0.477 0.725 1.241 sum -7.341 -0.132 0.579 7.364 Atomic orbital electron populations 1.20936 0.87716 1.04641 1.04084 1.20160 0.98282 0.91664 0.99207 1.21441 0.90868 1.00017 0.95774 1.20443 0.95192 0.92511 1.10426 1.18356 0.86947 0.84461 0.75942 1.90805 1.15019 1.87942 1.50658 1.45887 1.10915 1.04738 1.74760 1.21004 0.95585 0.82406 0.96730 0.91655 1.21830 1.00897 0.97061 0.96406 1.21415 0.98110 0.93044 1.01882 1.21750 0.99929 0.93831 0.97856 0.89405 1.22252 0.92915 0.84458 1.00124 1.92732 1.77015 1.63868 1.88044 1.21521 1.00837 0.96794 0.95927 1.21737 0.98679 0.93051 1.01891 1.18608 0.83481 0.91020 0.95711 1.84772 1.15559 1.96102 1.33870 1.20784 0.94954 0.95077 1.05272 1.25292 1.04152 1.00052 0.88951 1.86534 1.38606 1.94253 1.16859 0.93809 0.80903 0.72920 0.82790 1.21314 0.91709 0.99520 0.96240 0.89356 0.89826 0.90061 0.82354 0.74937 0.90431 0.93726 0.90300 0.91735 0.89925 0.89335 0.90776 0.91749 0.90478 0.89563 0.74344 0.88703 0.75813 1.22903 1.20289 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.32 10.00 71.24 0.71 2.03 16 2 C -0.09 0.52 5.87 -19.90 -0.12 0.41 16 3 C -0.06 0.23 9.18 22.52 0.21 0.43 16 4 C -0.18 -0.73 5.89 -20.01 -0.12 -0.84 16 5 C 0.55 4.03 7.73 86.70 0.67 4.70 16 6 O -0.56 -9.06 14.82 16.91 0.25 -8.81 16 7 N -0.71 0.19 5.03 -445.70 -2.24 -2.05 16 8 C 0.15 0.02 2.45 44.99 0.11 0.13 16 9 H 0.07 0.36 7.58 -2.39 -0.02 0.34 16 10 C -0.12 -0.03 5.49 30.60 0.17 0.13 16 11 C -0.11 0.25 5.20 30.59 0.16 0.41 16 12 C -0.11 0.39 2.51 -10.80 -0.03 0.36 16 13 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 14 C 0.06 -0.13 6.96 71.98 0.50 0.37 16 15 F -0.24 -0.98 16.84 44.97 0.76 -0.23 16 16 C -0.11 0.34 5.08 30.61 0.16 0.50 16 17 C -0.12 0.53 5.39 30.61 0.17 0.70 16 18 C 0.16 1.06 6.69 22.84 0.15 1.21 16 19 O -0.49 -5.44 10.91 -68.79 -0.75 -6.19 16 20 C -0.16 -0.24 5.27 -19.79 -0.10 -0.34 16 21 C -0.08 -0.13 2.37 71.24 0.17 0.04 16 22 O -0.55 -2.42 12.88 -148.98 -1.92 -4.34 16 23 Si 0.79 -2.40 29.91 68.60 2.05 -0.35 16 24 C -0.07 0.30 8.30 22.30 0.19 0.49 16 25 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 26 H 0.08 -1.06 8.08 -2.39 -0.02 -1.08 16 27 H 0.08 -1.03 8.08 -2.39 -0.02 -1.05 16 28 H 0.16 -1.62 6.40 -2.91 -0.02 -1.64 16 29 H 0.41 -2.86 6.63 -92.70 -0.61 -3.48 16 30 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.07 -0.16 7.80 -2.39 -0.02 -0.18 16 37 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.40 2.02 9.06 -74.06 -0.67 1.35 16 41 H 0.10 0.38 7.83 -2.39 -0.02 0.36 16 42 H 0.39 -1.79 8.70 -74.06 -0.64 -2.43 16 43 H -0.30 -1.55 7.11 99.48 0.71 -0.85 16 44 H -0.28 -0.14 7.11 99.48 0.71 0.56 16 45 H 0.16 -1.73 5.10 -2.91 -0.01 -1.75 16 Total: 0.00 -25.15 363.85 0.28 -24.87 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: -0.86 Total: -13.63 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 2.99 Total: 10.73 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -2.24 Total: -2.05 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -2.42 Total: -19.34 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.76 Total: -0.23 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.05 Total: -0.35 kcal Total: -25.15 0.28 -24.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16769142_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.147 kcal (2) G-P(sol) polarization free energy of solvation -25.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds