Wall clock time and date at job start Sun Mar 7 2021 08:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46728 * 2 1 4 4 C 1.52997 * 109.47402 * 240.00028 * 2 1 3 5 5 Si 1.86301 * 109.47406 * 119.99473 * 2 1 3 6 6 C 1.86306 * 109.46945 * 300.00431 * 5 2 1 7 7 C 1.86302 * 109.47372 * 180.02562 * 5 2 1 8 8 O 1.63094 * 109.47036 * 60.00229 * 5 2 1 9 9 C 1.42905 * 114.00136 * 180.02562 * 8 5 2 10 10 C 1.53005 * 109.47096 * 179.97438 * 9 8 5 11 11 H 1.08997 * 109.99590 * 173.89743 * 10 9 8 12 12 C 1.54329 * 109.88211 * 52.80916 * 10 9 8 13 13 C 1.55152 * 102.93934 * 218.38935 * 12 10 9 14 14 C 1.54686 * 101.68002 * 35.33403 * 13 12 10 15 15 N 1.47014 * 109.88150 * 295.00009 * 10 9 8 16 16 C 1.34773 * 125.65083 * 298.31775 * 15 10 9 17 17 O 1.21702 * 119.99768 * 1.88339 * 16 15 10 18 18 C 1.46677 * 120.00615 * 181.88106 * 16 15 10 19 19 C 1.37866 * 126.23779 * 172.03243 * 18 16 15 20 20 C 1.39833 * 107.08771 * 180.02562 * 19 18 16 21 21 C 1.35456 * 107.86482 * 359.97438 * 20 19 18 22 22 C 1.50701 * 125.56358 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47140 * 245.02299 * 22 21 20 24 24 Si 1.86300 * 109.47193 * 5.02935 * 22 21 20 25 25 H 1.48496 * 109.47307 * 59.99417 * 24 22 21 26 26 H 1.48501 * 109.46808 * 299.99674 * 24 22 21 27 27 H 1.48493 * 109.46989 * 179.97438 * 24 22 21 28 28 N 1.35535 * 108.87125 * 0.26531 * 21 20 19 29 29 H 1.08998 * 109.47470 * 299.99756 * 1 2 3 30 30 H 1.08992 * 109.47252 * 60.00590 * 1 2 3 31 31 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46733 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46707 * 299.99445 * 3 2 1 34 34 H 1.08988 * 109.47438 * 60.00091 * 3 2 1 35 35 H 1.08998 * 109.46644 * 299.99106 * 4 2 1 36 36 H 1.08992 * 109.47422 * 59.99486 * 4 2 1 37 37 H 1.09004 * 109.47350 * 180.02562 * 4 2 1 38 38 H 1.09008 * 109.46686 * 179.97438 * 6 5 2 39 39 H 1.09000 * 109.47185 * 299.99510 * 6 5 2 40 40 H 1.08994 * 109.47058 * 59.99857 * 6 5 2 41 41 H 1.09002 * 109.46474 * 300.00068 * 7 5 2 42 42 H 1.08997 * 109.46944 * 60.00057 * 7 5 2 43 43 H 1.08996 * 109.47181 * 180.02562 * 7 5 2 44 44 H 1.08998 * 109.46845 * 60.00223 * 9 8 5 45 45 H 1.09000 * 109.46576 * 299.99919 * 9 8 5 46 46 H 1.09003 * 110.71515 * 336.75332 * 12 10 9 47 47 H 1.08999 * 110.71909 * 99.84403 * 12 10 9 48 48 H 1.09000 * 111.00241 * 153.57646 * 13 12 10 49 49 H 1.09001 * 111.00523 * 277.42715 * 13 12 10 50 50 H 1.09005 * 110.39300 * 204.36032 * 14 13 12 51 51 H 1.09006 * 110.23634 * 82.11178 * 14 13 12 52 52 H 1.08007 * 126.45631 * 359.97438 * 19 18 16 53 53 H 1.08006 * 126.07064 * 180.02562 * 20 19 18 54 54 H 1.09003 * 109.46623 * 125.02429 * 22 21 20 55 55 H 0.96695 * 114.00045 * 60.00266 * 23 22 21 56 56 H 0.96993 * 125.67896 * 179.69769 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8781 1.5212 6 6 1.5299 0.0003 3.0423 7 6 4.0141 -0.8774 1.5216 8 8 1.6075 -2.4158 1.5213 9 6 2.0287 -3.1811 2.6522 10 6 1.4629 -4.5989 2.5480 11 1 1.8656 -5.2206 3.3476 12 6 1.8238 -5.2085 1.1769 13 6 0.5436 -6.0003 0.8009 14 6 -0.5671 -5.0942 1.3824 15 7 -0.0041 -4.5594 2.6356 16 6 -0.7164 -4.1137 3.6893 17 8 -0.1436 -3.6655 4.6651 18 6 -2.1818 -4.1688 3.6602 19 6 -3.0287 -3.8958 4.7133 20 6 -4.3350 -4.0712 4.2462 21 6 -4.2649 -4.4394 2.9445 22 6 -5.4432 -4.7313 2.0515 23 8 -5.4239 -6.1089 1.6724 24 14 -7.0229 -4.3610 2.9670 25 1 -7.0429 -2.9294 3.3609 26 1 -7.1010 -5.2101 4.1828 27 1 -8.1840 -4.6480 2.0868 28 7 -2.9619 -4.5077 2.5778 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7216 -1.2490 38 1 1.8930 -0.5138 3.9323 39 1 1.8933 1.0279 3.0423 40 1 0.4400 0.0002 3.0423 41 1 4.3777 -1.3911 0.6316 42 1 4.3770 0.1504 1.5217 43 1 4.3774 -1.3915 2.4113 44 1 1.6638 -2.7110 3.5654 45 1 3.1176 -3.2249 2.6760 46 1 2.0209 -4.4242 0.4460 47 1 2.6813 -5.8756 1.2652 48 1 0.4465 -6.0952 -0.2806 49 1 0.5350 -6.9794 1.2798 50 1 -1.4644 -5.6779 1.5882 51 1 -0.7920 -4.2823 0.6907 52 1 -2.7380 -3.6027 5.7114 53 1 -5.2394 -3.9361 4.8209 54 1 -5.3858 -4.1080 1.1591 55 1 -5.4721 -6.7227 2.4180 56 1 -2.6337 -4.7530 1.6987 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16771388_6580494.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:28:44 Heat of formation + Delta-G solvation = -106.555592 kcal Electronic energy + Delta-G solvation = -33909.786735 eV Core-core repulsion = 29750.272166 eV Total energy + Delta-G solvation = -4159.514569 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.67398 -40.93688 -38.77409 -37.66102 -37.31151 -36.85478 -33.23176 -32.14617 -31.47530 -30.85047 -29.42638 -29.10737 -27.87273 -27.41238 -27.08606 -26.23913 -24.27187 -22.74986 -21.93965 -21.22218 -20.79489 -20.38740 -18.93670 -18.32325 -17.95813 -17.22466 -16.87174 -16.59090 -16.24978 -15.90017 -15.83146 -15.56744 -15.37664 -15.05467 -14.88469 -14.80808 -14.71463 -14.46523 -14.23481 -14.09235 -14.04445 -14.00831 -13.76300 -13.66812 -13.53494 -13.40322 -13.27533 -13.11743 -12.98543 -12.94092 -12.43639 -12.28903 -12.28282 -12.13702 -12.11427 -11.90595 -11.79786 -11.70394 -11.66785 -11.53431 -11.35331 -11.15026 -10.62728 -10.34550 -10.12282 -10.09108 -9.81998 -9.25428 0.30262 1.10711 1.43176 1.48878 1.57150 1.63093 1.77265 1.78575 1.94829 2.06675 2.20115 2.26235 2.46191 3.37684 3.48722 3.52406 3.62428 3.79085 3.95780 4.07588 4.09510 4.10294 4.21357 4.26008 4.31302 4.33295 4.38635 4.44166 4.46202 4.54343 4.60147 4.63499 4.71394 4.74924 4.78267 4.78879 4.83115 4.89048 4.92618 4.96901 4.98458 5.04784 5.06800 5.08655 5.09622 5.15763 5.25685 5.31546 5.37025 5.38501 5.44186 5.48001 5.52395 5.60130 5.60871 5.78016 6.29095 6.37621 6.61822 6.97910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.142 4.142 4 C -0.133 4.133 5 Si 1.319 2.681 6 C -0.525 4.525 7 C -0.513 4.513 8 O -0.621 6.621 9 C 0.067 3.933 10 C 0.130 3.870 11 H 0.086 0.914 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.081 3.919 15 N -0.603 5.603 16 C 0.598 3.402 17 O -0.570 6.570 18 C -0.060 4.060 19 C -0.120 4.120 20 C -0.216 4.216 21 C 0.025 3.975 22 C -0.062 4.062 23 O -0.550 6.550 24 Si 1.010 2.990 25 H -0.261 1.261 26 H -0.251 1.251 27 H -0.269 1.269 28 N -0.515 5.515 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.143 0.857 53 H 0.158 0.842 54 H 0.133 0.867 55 H 0.393 0.607 56 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -3.275 -5.298 6.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.417 4.417 3 C -0.199 4.199 4 C -0.190 4.190 5 Si 1.448 2.552 6 C -0.624 4.624 7 C -0.615 4.615 8 O -0.580 6.580 9 C -0.009 4.009 10 C 0.028 3.972 11 H 0.104 0.896 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.041 4.041 15 N -0.335 5.335 16 C 0.389 3.611 17 O -0.450 6.450 18 C -0.174 4.174 19 C -0.147 4.147 20 C -0.240 4.240 21 C -0.094 4.094 22 C -0.172 4.172 23 O -0.357 6.357 24 Si 0.832 3.168 25 H -0.185 1.185 26 H -0.174 1.174 27 H -0.193 1.193 28 N -0.118 5.118 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.126 0.874 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.104 0.896 52 H 0.161 0.839 53 H 0.175 0.825 54 H 0.150 0.850 55 H 0.243 0.757 56 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.551 -2.817 -5.187 5.928 hybrid contribution 0.712 0.471 0.638 1.066 sum 0.160 -2.346 -4.549 5.120 Atomic orbital electron populations 1.21493 0.94502 1.01621 1.01389 1.25779 1.00085 1.02814 1.13019 1.21613 1.01425 0.94883 1.02020 1.21516 1.01117 1.00191 0.96220 0.76178 0.62934 0.52906 0.63204 1.27299 1.06017 1.09871 1.19232 1.27029 1.24668 1.05019 1.04821 1.85292 1.79685 1.46007 1.47046 1.22430 0.99123 0.92387 0.87004 1.21967 0.79341 0.95339 1.00587 0.89613 1.22678 0.98663 1.00214 0.94232 1.22713 0.92692 0.97796 1.02848 1.22767 0.98174 0.98000 0.85203 1.48368 1.07563 1.61878 1.15677 1.16889 0.84994 0.77408 0.81824 1.90811 1.71233 1.48472 1.34496 1.20303 0.90359 1.16414 0.90314 1.21415 0.92258 1.02553 0.98437 1.20913 0.98004 1.10476 0.94577 1.21449 0.85764 1.06065 0.96095 1.24929 1.01536 0.86800 1.03952 1.86485 1.96785 1.14486 1.37923 0.84779 0.73478 0.80596 0.77934 1.18505 1.17424 1.19325 1.42747 1.05443 1.51177 1.12433 0.93402 0.92912 0.92466 0.91602 0.92727 0.92624 0.91849 0.93198 0.91913 0.92533 0.90639 0.92579 0.90119 0.90574 0.91388 0.93354 0.89751 0.88437 0.88355 0.87407 0.90210 0.90357 0.89598 0.83871 0.82456 0.84961 0.75744 0.72566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 7.85 71.98 0.56 0.42 16 2 C -0.37 0.17 0.53 -10.79 -0.01 0.16 16 3 C -0.14 0.06 7.85 71.98 0.56 0.63 16 4 C -0.13 0.22 7.85 71.98 0.56 0.79 16 5 Si 1.32 -0.65 8.45 68.60 0.58 -0.07 16 6 C -0.53 -2.50 8.50 113.37 0.96 -1.54 16 7 C -0.51 0.68 8.50 113.37 0.96 1.65 16 8 O -0.62 -0.37 7.31 -148.98 -1.09 -1.46 16 9 C 0.07 0.11 4.78 71.98 0.34 0.45 16 10 C 0.13 0.03 3.27 45.35 0.15 0.18 16 11 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 12 C -0.12 0.70 6.37 31.78 0.20 0.90 16 13 C -0.12 0.92 7.07 31.91 0.23 1.15 16 14 C 0.08 -0.33 5.44 86.78 0.47 0.14 16 15 N -0.60 -1.57 3.02 -793.14 -2.40 -3.97 16 16 C 0.60 5.59 7.61 86.45 0.66 6.25 16 17 O -0.57 -9.35 15.79 -4.36 -0.07 -9.42 16 18 C -0.06 -0.40 6.84 40.35 0.28 -0.13 16 19 C -0.12 -0.86 10.66 22.57 0.24 -0.62 16 20 C -0.22 -0.58 9.32 22.01 0.21 -0.37 16 21 C 0.03 0.00 6.47 41.34 0.27 0.27 16 22 C -0.06 0.26 3.08 71.24 0.22 0.48 16 23 O -0.55 2.13 12.88 -148.98 -1.92 0.21 16 24 Si 1.01 -3.69 25.84 68.60 1.77 -1.92 16 25 H -0.26 0.34 7.11 99.48 0.71 1.05 16 26 H -0.25 0.79 7.11 99.48 0.71 1.50 16 27 H -0.27 0.26 7.11 99.48 0.71 0.96 16 28 N -0.51 -0.39 5.38 -171.93 -0.93 -1.31 16 29 H 0.05 0.10 7.79 -2.39 -0.02 0.09 16 30 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 32 H 0.07 -0.15 7.79 -2.38 -0.02 -0.17 16 33 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.05 -0.02 7.79 -2.39 -0.02 -0.04 16 35 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 36 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 38 H 0.06 0.38 7.48 -2.38 -0.02 0.36 16 39 H 0.07 0.24 7.79 -2.39 -0.02 0.22 16 40 H 0.05 0.41 7.79 -2.39 -0.02 0.39 16 41 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 42 H 0.08 -0.11 7.79 -2.39 -0.02 -0.13 16 43 H 0.07 -0.08 7.48 -2.39 -0.02 -0.10 16 44 H 0.05 0.34 5.72 -2.39 -0.01 0.33 16 45 H 0.08 -0.24 7.21 -2.39 -0.02 -0.26 16 46 H 0.10 -0.55 6.95 -2.39 -0.02 -0.56 16 47 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 48 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 49 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 50 H 0.08 -0.44 5.55 -2.38 -0.01 -0.45 16 51 H 0.09 -0.45 8.11 -2.38 -0.02 -0.47 16 52 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 53 H 0.16 -0.13 6.19 -2.91 -0.02 -0.14 16 54 H 0.13 -0.90 7.96 -2.39 -0.02 -0.91 16 55 H 0.39 -3.69 8.70 -74.06 -0.64 -4.33 16 56 H 0.43 -1.51 5.22 -92.71 -0.48 -2.00 16 Total: 0.00 -17.27 431.86 3.32 -13.95 By element: Atomic # 1 Polarization: -7.31 SS G_CDS: 0.49 Total: -6.82 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.88 Total: 10.80 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -3.32 Total: -5.28 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -3.08 Total: -10.66 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.35 Total: -1.99 kcal Total: -17.27 3.32 -13.95 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16771388_6580494.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.605 kcal (2) G-P(sol) polarization free energy of solvation -17.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds