Wall clock time and date at job start Sun Mar 7 2021 08:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.52999 * 109.47192 * 239.99877 * 2 1 3 5 5 Si 1.86305 * 109.47054 * 120.00121 * 2 1 3 6 6 C 1.86298 * 109.47097 * 59.99826 * 5 2 1 7 7 C 1.86304 * 109.47052 * 299.99835 * 5 2 1 8 8 O 1.63098 * 109.47220 * 180.02562 * 5 2 1 9 9 C 1.42895 * 114.00315 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47333 * 180.02562 * 9 8 5 11 11 H 1.09002 * 109.86979 * 306.01128 * 10 9 8 12 12 C 1.54327 * 109.88091 * 184.99637 * 10 9 8 13 13 C 1.55154 * 102.94230 * 218.38850 * 12 10 9 14 14 C 1.54906 * 101.58217 * 35.50375 * 13 12 10 15 15 N 1.47017 * 109.88474 * 67.18883 * 10 9 8 16 16 C 1.34776 * 125.65235 * 298.33994 * 15 10 9 17 17 O 1.21641 * 119.99323 * 353.53765 * 16 15 10 18 18 C 1.47190 * 120.00744 * 173.53706 * 16 15 10 19 19 C 1.36003 * 123.46289 * 172.01498 * 18 16 15 20 20 S 1.70455 * 110.81432 * 179.97438 * 19 18 16 21 21 C 1.75499 * 92.44478 * 359.97438 * 20 19 18 22 22 C 1.50698 * 124.71165 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47190 * 244.97378 * 22 21 20 24 24 Si 1.86302 * 109.47001 * 4.97441 * 22 21 20 25 25 H 1.48499 * 109.47213 * 60.00079 * 24 22 21 26 26 H 1.48499 * 109.47082 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47181 * 299.99841 * 24 22 21 28 28 C 1.32769 * 110.57830 * 359.73724 * 21 20 19 29 29 H 1.08997 * 109.46646 * 299.99962 * 1 2 3 30 30 H 1.08995 * 109.46734 * 59.99914 * 1 2 3 31 31 H 1.08995 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47377 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47200 * 300.00295 * 3 2 1 34 34 H 1.09004 * 109.47058 * 60.00003 * 3 2 1 35 35 H 1.08995 * 109.47263 * 300.00233 * 4 2 1 36 36 H 1.09007 * 109.46901 * 60.00008 * 4 2 1 37 37 H 1.08994 * 109.47296 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47206 * 300.00222 * 6 5 2 39 39 H 1.09004 * 109.47139 * 60.00042 * 6 5 2 40 40 H 1.08997 * 109.47154 * 179.97438 * 6 5 2 41 41 H 1.08995 * 109.47240 * 179.97438 * 7 5 2 42 42 H 1.09005 * 109.46928 * 300.00444 * 7 5 2 43 43 H 1.09006 * 109.46940 * 59.99969 * 7 5 2 44 44 H 1.09010 * 109.46868 * 299.99713 * 9 8 5 45 45 H 1.09000 * 109.47187 * 59.99617 * 9 8 5 46 46 H 1.09004 * 110.72230 * 336.75561 * 12 10 9 47 47 H 1.09003 * 110.71715 * 99.84814 * 12 10 9 48 48 H 1.08996 * 111.00252 * 153.57950 * 13 12 10 49 49 H 1.09002 * 111.00219 * 277.42659 * 13 12 10 50 50 H 1.08997 * 110.36689 * 81.82890 * 14 13 12 51 51 H 1.09004 * 110.36756 * 204.04169 * 14 13 12 52 52 H 1.07996 * 124.59346 * 359.97438 * 19 18 16 53 53 H 1.09004 * 109.47515 * 124.97244 * 22 21 20 54 54 H 0.96705 * 114.00271 * 59.99868 * 23 22 21 55 55 H 1.07999 * 123.45908 * 180.23110 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 -2.6347 1.5211 7 6 1.5300 0.0000 3.0423 8 8 3.7820 -0.8777 1.5215 9 6 4.3633 -1.5309 2.6518 10 6 5.8885 -1.4693 2.5478 11 1 6.2109 -1.8714 1.5874 12 6 6.5259 -2.2792 3.6966 13 6 7.7545 -1.4169 4.0895 14 6 7.2078 0.0172 3.8800 15 7 6.3436 -0.0786 2.6894 16 6 6.0240 0.9402 1.8669 17 8 5.3979 0.7244 0.8466 18 6 6.4326 2.3137 2.2031 19 6 6.2881 3.3677 1.3558 20 16 6.8652 4.8033 2.0710 21 6 7.3148 3.9741 3.5510 22 6 7.9403 4.6380 4.7505 23 8 9.2620 4.1294 4.9413 24 14 8.0174 6.4785 4.4718 25 1 6.6439 7.0071 4.2737 26 1 8.6344 7.1326 5.6536 27 1 8.8360 6.7626 3.2658 28 6 7.0216 2.6818 3.4694 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 0.4399 -2.6347 1.5211 39 1 1.8933 -3.1486 0.6311 40 1 1.8937 -3.1487 2.4109 41 1 1.8930 -0.5141 3.9323 42 1 1.8934 1.0277 3.0423 43 1 0.4400 0.0000 3.0423 44 1 4.0413 -1.0312 3.5655 45 1 4.0420 -2.5722 2.6746 46 1 5.8345 -2.3699 4.5344 47 1 6.8379 -3.2635 3.3475 48 1 8.0303 -1.5817 5.1311 49 1 8.5979 -1.6142 3.4278 50 1 6.6263 0.3319 4.7465 51 1 8.0273 0.7132 3.7009 52 1 5.8651 3.3037 0.3642 53 1 7.3395 4.4295 5.6358 54 1 9.8534 4.2798 4.1911 55 1 7.2080 1.9774 4.2666 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16771388_6894386.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:29 Heat of formation + Delta-G solvation = -112.524457 kcal Electronic energy + Delta-G solvation = -33787.857122 eV Core-core repulsion = 29654.435741 eV Total energy + Delta-G solvation = -4133.421382 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.34672 -39.13302 -38.35227 -37.30867 -36.93102 -36.81002 -32.61938 -31.62906 -31.17545 -29.40305 -29.09303 -27.86446 -27.41201 -27.01608 -26.26148 -25.68275 -23.33740 -21.78533 -21.17330 -20.44446 -19.95900 -18.84600 -18.00237 -17.65980 -17.41947 -16.87212 -16.61182 -16.27074 -15.88679 -15.73005 -15.54411 -15.27003 -15.20328 -14.87604 -14.76406 -14.71702 -14.38022 -14.20068 -14.05193 -13.78304 -13.63281 -13.53686 -13.44228 -13.39936 -13.20017 -13.10110 -12.99469 -12.96806 -12.90872 -12.60529 -12.42458 -12.39811 -12.34531 -12.19364 -11.96595 -11.80220 -11.71495 -11.61383 -11.53703 -11.41758 -11.16706 -10.76624 -10.47934 -10.24273 -10.03986 -9.97723 -9.55411 -9.38880 -0.27066 0.36258 0.69780 0.94937 1.13849 1.41001 1.52108 1.62933 1.81165 1.90414 2.13677 2.16463 2.43829 2.51845 3.39221 3.58220 3.68127 3.69542 3.97281 3.99261 4.11112 4.11303 4.12758 4.23201 4.29716 4.37518 4.42877 4.44610 4.53654 4.60384 4.61828 4.69135 4.69807 4.74440 4.76265 4.77676 4.79737 4.80074 4.82434 4.96162 4.97256 5.02198 5.05117 5.06714 5.07033 5.17456 5.18689 5.21085 5.30289 5.37059 5.38275 5.45495 5.48084 5.53120 5.59874 5.75711 6.64644 6.65900 7.36677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.380 4.380 3 C -0.129 4.129 4 C -0.129 4.129 5 Si 1.299 2.701 6 C -0.510 4.510 7 C -0.510 4.510 8 O -0.612 6.612 9 C 0.066 3.934 10 C 0.133 3.867 11 H 0.066 0.934 12 C -0.124 4.124 13 C -0.127 4.127 14 C 0.080 3.920 15 N -0.610 5.610 16 C 0.579 3.421 17 O -0.527 6.527 18 C -0.171 4.171 19 C -0.184 4.184 20 S 0.178 5.822 21 C -0.238 4.238 22 C -0.028 4.028 23 O -0.541 6.541 24 Si 0.907 3.093 25 H -0.245 1.245 26 H -0.239 1.239 27 H -0.236 1.236 28 C -0.095 4.095 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.169 0.831 53 H 0.141 0.859 54 H 0.390 0.610 55 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -1.297 6.214 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.422 4.422 3 C -0.186 4.186 4 C -0.186 4.186 5 Si 1.428 2.572 6 C -0.612 4.612 7 C -0.612 4.612 8 O -0.571 6.571 9 C -0.011 4.011 10 C 0.029 3.971 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.165 4.165 14 C -0.041 4.041 15 N -0.344 5.344 16 C 0.366 3.634 17 O -0.404 6.404 18 C -0.189 4.189 19 C -0.322 4.322 20 S 0.444 5.556 21 C -0.355 4.355 22 C -0.141 4.141 23 O -0.348 6.348 24 Si 0.729 3.271 25 H -0.169 1.169 26 H -0.161 1.161 27 H -0.159 1.159 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.126 0.874 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.108 0.892 52 H 0.186 0.814 53 H 0.159 0.841 54 H 0.240 0.760 55 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.663 0.987 5.392 6.094 hybrid contribution -0.712 -1.565 -0.598 1.821 sum 1.951 -0.578 4.793 5.208 Atomic orbital electron populations 1.21595 0.93761 1.02215 1.01983 1.25884 1.00217 1.02618 1.13451 1.21445 1.01044 0.95340 1.00772 1.21446 1.00475 0.99928 0.96786 0.76497 0.52041 0.64779 0.63859 1.27020 1.07288 1.22379 1.04555 1.27054 1.07209 1.08544 1.18361 1.85661 1.47884 1.76529 1.47076 1.22634 0.93814 0.97183 0.87428 1.21811 0.93037 0.81802 1.00403 0.91628 1.22710 0.97642 0.98889 0.96923 1.22816 0.97316 0.92456 1.03946 1.22992 0.94045 0.99540 0.87552 1.48321 1.49926 1.08262 1.27941 1.17437 0.79516 0.83572 0.82883 1.90820 1.39997 1.84348 1.25240 1.20412 1.08228 0.94156 0.96087 1.25666 1.04263 0.97428 1.04882 1.83190 1.56362 1.08867 1.07137 1.24980 1.11227 0.98321 1.00950 1.24287 0.85727 1.07572 0.96551 1.86508 1.20015 1.82742 1.45569 0.86072 0.82743 0.75385 0.82894 1.16878 1.16139 1.15897 1.21998 0.97306 0.96021 0.97015 0.92057 0.93250 0.91651 0.92760 0.93878 0.93043 0.92033 0.93678 0.93396 0.90535 0.91323 0.90688 0.90996 0.92306 0.90559 0.92173 0.90258 0.88626 0.88414 0.87353 0.90738 0.89602 0.89225 0.81376 0.84137 0.76032 0.79914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.42 7.85 71.98 0.56 0.14 16 2 C -0.38 -2.04 0.53 -10.79 -0.01 -2.05 16 3 C -0.13 -1.04 7.85 71.98 0.56 -0.47 16 4 C -0.13 -0.87 7.85 71.98 0.56 -0.30 16 5 Si 1.30 3.32 8.45 68.60 0.58 3.90 16 6 C -0.51 -0.42 8.50 113.37 0.96 0.54 16 7 C -0.51 -1.21 8.50 113.37 0.96 -0.25 16 8 O -0.61 -3.86 5.50 -126.56 -0.70 -4.56 16 9 C 0.07 0.04 4.54 71.98 0.33 0.37 16 10 C 0.13 0.06 3.26 45.34 0.15 0.20 16 11 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 12 C -0.12 0.87 6.48 31.78 0.21 1.08 16 13 C -0.13 1.01 7.08 31.98 0.23 1.23 16 14 C 0.08 -0.38 4.97 86.85 0.43 0.05 16 15 N -0.61 -1.43 3.06 -792.14 -2.43 -3.86 16 16 C 0.58 4.86 7.44 86.59 0.64 5.51 16 17 O -0.53 -7.83 13.58 18.26 0.25 -7.58 16 18 C -0.17 -0.88 5.92 -19.87 -0.12 -0.99 16 19 C -0.18 -0.89 10.53 67.30 0.71 -0.18 16 20 S 0.18 0.12 20.20 -56.49 -1.14 -1.02 16 21 C -0.24 0.30 5.65 24.51 0.14 0.43 16 22 C -0.03 0.12 2.94 71.24 0.21 0.33 16 23 O -0.54 2.18 12.88 -148.98 -1.92 0.27 16 24 Si 0.91 -2.58 26.20 68.60 1.80 -0.78 16 25 H -0.25 0.21 7.11 99.48 0.71 0.92 16 26 H -0.24 0.19 7.11 99.48 0.71 0.89 16 27 H -0.24 0.56 7.11 99.48 0.71 1.27 16 28 C -0.09 0.01 8.50 22.67 0.19 0.21 16 29 H 0.06 0.09 7.79 -2.39 -0.02 0.07 16 30 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.05 7.79 -2.39 -0.02 0.04 16 32 H 0.05 0.66 7.14 -2.39 -0.02 0.64 16 33 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.05 0.34 7.79 -2.39 -0.02 0.32 16 35 H 0.06 0.25 7.79 -2.39 -0.02 0.24 16 36 H 0.04 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.05 0.47 7.97 -2.39 -0.02 0.45 16 38 H 0.08 0.00 7.79 -2.38 -0.02 -0.02 16 39 H 0.07 0.13 7.79 -2.39 -0.02 0.11 16 40 H 0.07 -0.09 7.48 -2.39 -0.02 -0.11 16 41 H 0.07 0.04 7.48 -2.39 -0.02 0.02 16 42 H 0.06 0.28 7.79 -2.38 -0.02 0.26 16 43 H 0.08 0.09 7.79 -2.38 -0.02 0.08 16 44 H 0.06 -0.07 7.21 -2.38 -0.02 -0.09 16 45 H 0.08 -0.30 7.21 -2.39 -0.02 -0.31 16 46 H 0.10 -0.93 7.85 -2.38 -0.02 -0.95 16 47 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 49 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H 0.09 -0.64 7.46 -2.39 -0.02 -0.66 16 51 H 0.09 -0.45 6.00 -2.38 -0.01 -0.46 16 52 H 0.17 0.96 8.03 -2.91 -0.02 0.93 16 53 H 0.14 -0.99 7.96 -2.39 -0.02 -1.01 16 54 H 0.39 -3.74 8.70 -74.05 -0.64 -4.39 16 55 H 0.18 -0.78 4.26 -2.91 -0.01 -0.79 16 Total: 0.00 -16.03 433.66 4.15 -11.88 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: 0.98 Total: -4.10 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.73 Total: 5.85 kcal Atomic # 7 Polarization: -1.43 SS G_CDS: -2.43 Total: -3.86 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -2.37 Total: -11.87 kcal Atomic # 14 Polarization: 0.74 SS G_CDS: 2.38 Total: 3.11 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.14 Total: -1.02 kcal Total: -16.03 4.15 -11.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16771388_6894386.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.648 kcal (2) G-P(sol) polarization free energy of solvation -16.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds