Wall clock time and date at job start Sun Mar 7 2021 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00045 * 2 1 4 4 C 1.53000 * 112.85322 * 66.08182 * 3 2 1 5 5 F 1.39905 * 109.47261 * 283.55877 * 4 3 2 6 6 F 1.39904 * 109.46941 * 43.55423 * 4 3 2 7 7 F 1.39899 * 109.47790 * 163.55771 * 4 3 2 8 8 C 1.53782 * 113.61313 * 294.88588 * 3 2 1 9 9 C 1.53774 * 87.08472 * 270.79769 * 8 3 2 10 10 H 1.08999 * 113.61272 * 89.19326 * 9 8 3 11 11 N 1.46497 * 113.61997 * 220.01918 * 9 8 3 12 12 C 1.34778 * 120.00360 * 204.99963 * 11 9 8 13 13 O 1.21628 * 119.99303 * 359.97438 * 12 11 9 14 14 C 1.47254 * 120.00159 * 180.02562 * 12 11 9 15 15 C 1.36774 * 126.94130 * 359.96935 * 14 12 11 16 16 N 1.34664 * 108.39559 * 180.02562 * 15 14 12 17 17 C 1.46496 * 124.85024 * 180.26554 * 16 15 14 18 18 C 1.36451 * 110.29787 * 359.97438 * 16 15 14 19 19 C 1.50700 * 125.56825 * 179.97438 * 18 16 15 20 20 O 1.42895 * 109.47446 * 330.00510 * 19 18 16 21 21 Si 1.86294 * 109.47066 * 210.00110 * 19 18 16 22 22 C 1.34486 * 108.85420 * 0.02562 * 18 16 15 23 23 C 1.53780 * 113.69590 * 197.35237 * 3 2 1 24 24 H 1.08999 * 109.46867 * 182.46862 * 1 2 3 25 25 H 1.09003 * 109.46992 * 302.46641 * 1 2 3 26 26 H 1.08996 * 109.47208 * 62.46910 * 1 2 3 27 27 H 1.09004 * 113.61621 * 156.24719 * 8 3 2 28 28 H 1.09003 * 113.61841 * 25.34936 * 8 3 2 29 29 H 0.97002 * 119.99542 * 24.99923 * 11 9 8 30 30 H 1.08000 * 125.80634 * 0.07147 * 15 14 12 31 31 H 1.08999 * 109.47479 * 269.69978 * 17 16 15 32 32 H 1.09002 * 109.46788 * 29.70231 * 17 16 15 33 33 H 1.09006 * 109.47185 * 149.69369 * 17 16 15 34 34 H 1.09000 * 109.46842 * 90.00793 * 19 18 16 35 35 H 0.96700 * 113.99664 * 180.02562 * 20 19 18 36 36 H 1.48505 * 110.00140 * 298.68720 * 21 19 18 37 37 H 1.48504 * 109.99980 * 60.00163 * 21 19 18 38 38 H 1.08004 * 126.83077 * 180.02562 * 22 18 16 39 39 H 1.09008 * 113.60825 * 334.57697 * 23 3 2 40 40 H 1.09001 * 113.61800 * 203.67503 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7297 2.0808 1.2888 5 9 0.4130 2.5533 1.2716 6 9 1.9074 1.2356 2.3895 7 9 2.6121 3.1622 1.3840 8 6 1.7191 2.1093 -1.2782 9 6 2.9952 1.4854 -1.8672 10 1 2.8222 0.5390 -2.3794 11 7 3.7954 2.4229 -2.6590 12 6 4.6190 1.9608 -3.6207 13 8 4.6981 0.7655 -3.8307 14 6 5.4237 2.9032 -4.4162 15 6 5.4461 4.2658 -4.3010 16 7 6.3106 4.7551 -5.2102 17 6 6.6162 6.1758 -5.3950 18 6 6.8661 3.7379 -5.9304 19 6 7.8770 3.8973 -7.0366 20 8 7.6731 5.1509 -7.6913 21 14 7.6741 2.5136 -8.2674 22 6 6.3631 2.5701 -5.4924 23 6 3.4895 1.3233 -0.4200 24 1 -0.3633 -1.0267 0.0443 25 1 -0.3633 0.5517 0.8671 26 1 -0.3633 0.4750 -0.9112 27 1 1.7845 3.1886 -1.1397 28 1 0.8067 1.8018 -1.7892 29 1 3.7325 3.3762 -2.4912 30 1 4.8691 4.8502 -3.5995 31 1 5.9329 6.6019 -6.1296 32 1 6.5012 6.6987 -4.4455 33 1 7.6421 6.2840 -5.7474 34 1 8.8826 3.8657 -6.6171 35 1 8.2899 5.3208 -8.4165 36 1 7.9150 1.2060 -7.6059 37 1 6.3070 2.5454 -8.8466 38 1 6.6035 1.5832 -5.8596 39 1 4.0064 0.3810 -0.2380 40 1 4.0390 2.1876 -0.0468 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:43:08 Heat of formation + Delta-G solvation = -172.782331 kcal Electronic energy + Delta-G solvation = -29648.019898 eV Core-core repulsion = 24824.091174 eV Total energy + Delta-G solvation = -4823.928724 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.29610 -48.82233 -48.76160 -42.55260 -41.53841 -39.92439 -37.66714 -37.35799 -34.51649 -33.74107 -31.60768 -29.16776 -28.14472 -27.57522 -26.83259 -26.27307 -24.57931 -23.16602 -21.53543 -21.09269 -20.44624 -19.79456 -19.57466 -19.23915 -18.55766 -18.29168 -17.32122 -17.28548 -16.82782 -16.54644 -16.39047 -15.96631 -15.81922 -15.66666 -15.60860 -15.47342 -15.36920 -15.19472 -14.94476 -14.92446 -14.92226 -14.74866 -14.53434 -13.77980 -13.75217 -13.42226 -13.34334 -13.23786 -13.17345 -13.13594 -12.74695 -12.67889 -12.56927 -12.04093 -11.78470 -11.22378 -10.98342 -10.62429 -10.28362 -9.72832 -9.28862 -5.03282 0.60557 0.92976 1.37390 1.41745 1.64554 1.89003 2.02932 2.06479 2.14916 2.36625 2.51276 2.58905 2.81040 3.20908 3.22872 3.37919 3.49164 3.68060 3.75390 3.88372 3.96871 4.22364 4.23687 4.25092 4.31917 4.35868 4.40139 4.40760 4.52730 4.56123 4.65944 4.69803 4.76112 4.77873 4.85969 4.91034 5.32803 5.48217 5.68783 5.86254 6.15142 6.50538 6.83558 7.19927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.351 6.351 3 C 0.043 3.957 4 C 0.440 3.560 5 F -0.180 7.180 6 F -0.186 7.186 7 F -0.172 7.172 8 C -0.146 4.146 9 C 0.140 3.860 10 H 0.105 0.895 11 N -0.701 5.701 12 C 0.592 3.408 13 O -0.594 6.594 14 C -0.263 4.263 15 C 0.078 3.922 16 N -0.421 5.421 17 C 0.070 3.930 18 C 0.021 3.979 19 C -0.040 4.040 20 O -0.557 6.557 21 Si 0.798 3.202 22 C -0.187 4.187 23 C -0.131 4.131 24 H 0.110 0.890 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.109 0.891 29 H 0.418 0.582 30 H 0.219 0.781 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.410 0.590 36 H -0.302 1.302 37 H -0.312 1.312 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 9.414 -3.269 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.269 6.269 3 C 0.000 4.000 4 C 0.385 3.615 5 F -0.162 7.162 6 F -0.168 7.168 7 F -0.153 7.153 8 C -0.183 4.183 9 C 0.034 3.966 10 H 0.123 0.877 11 N -0.352 5.352 12 C 0.383 3.617 13 O -0.476 6.476 14 C -0.273 4.273 15 C -0.060 4.060 16 N -0.095 5.095 17 C -0.069 4.069 18 C -0.089 4.089 19 C -0.151 4.151 20 O -0.368 6.368 21 Si 0.705 3.295 22 C -0.211 4.211 23 C -0.170 4.170 24 H 0.129 0.871 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.128 0.872 29 H 0.256 0.744 30 H 0.235 0.765 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.263 0.737 36 H -0.230 1.230 37 H -0.240 1.240 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.832 8.142 -3.257 8.959 hybrid contribution -0.649 0.158 1.083 1.273 sum 1.182 8.300 -2.173 8.661 Atomic orbital electron populations 1.23308 0.78453 1.05283 1.02025 1.88109 1.22357 1.22357 1.94032 1.23602 1.00047 0.86419 0.89971 1.21213 0.74293 0.78597 0.87374 1.93189 1.36884 1.89286 1.96820 1.93198 1.95004 1.71089 1.57477 1.93174 1.68769 1.56838 1.96567 1.24007 0.99826 1.02193 0.92319 1.22076 0.90430 0.94475 0.89620 0.87710 1.45500 1.43056 1.10959 1.35698 1.17637 0.78382 0.86910 0.78784 1.90764 1.68188 1.18433 1.70189 1.20249 1.08086 0.93441 1.05486 1.22527 0.95239 0.92758 0.95446 1.43810 1.31355 1.08406 1.25892 1.22431 1.04603 0.75368 1.04506 1.20150 1.02870 0.87275 0.98622 1.24272 0.98078 0.96704 0.96001 1.86366 1.62397 1.34980 1.53080 0.94928 0.81389 0.73442 0.79756 1.21634 1.01758 0.96866 1.00892 1.23776 0.91375 1.05917 0.95916 0.87127 0.93104 0.91155 0.84990 0.87224 0.74387 0.76480 0.90062 0.87489 0.88158 0.87770 0.73698 1.23024 1.24010 0.85765 0.89389 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.18 16 2 O -0.35 -1.26 10.33 -148.98 -1.54 -2.80 16 3 C 0.04 0.02 0.85 -10.27 -0.01 0.01 16 4 C 0.44 0.93 2.52 71.98 0.18 1.11 16 5 F -0.18 -0.35 15.24 44.97 0.69 0.34 16 6 F -0.19 -1.23 17.09 44.97 0.77 -0.46 16 7 F -0.17 -0.14 15.82 44.97 0.71 0.57 16 8 C -0.15 0.64 6.67 31.12 0.21 0.85 16 9 C 0.14 0.11 4.18 45.52 0.19 0.30 16 10 H 0.10 0.69 7.46 -2.39 -0.02 0.67 16 11 N -0.70 0.02 5.34 -443.47 -2.37 -2.35 16 12 C 0.59 5.69 7.81 86.61 0.68 6.37 16 13 O -0.59 -11.80 16.57 -4.12 -0.07 -11.87 16 14 C -0.26 -1.92 6.29 -19.04 -0.12 -2.04 16 15 C 0.08 -0.10 10.83 83.92 0.91 0.80 16 16 N -0.42 0.10 3.09 -533.23 -1.65 -1.54 16 17 C 0.07 -0.53 9.80 127.77 1.25 0.73 16 18 C 0.02 0.09 6.17 40.98 0.25 0.35 16 19 C -0.04 0.11 2.85 71.24 0.20 0.31 16 20 O -0.56 3.58 10.31 -148.98 -1.54 2.04 16 21 Si 0.80 -0.46 31.23 68.60 2.14 1.69 16 22 C -0.19 -1.97 9.49 23.62 0.22 -1.75 16 23 C -0.13 -0.04 7.13 31.12 0.22 0.18 16 24 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.05 -0.04 6.25 -2.39 -0.01 -0.05 16 26 H 0.07 -0.32 6.75 -2.39 -0.02 -0.33 16 27 H 0.13 -1.21 8.04 -2.38 -0.02 -1.23 16 28 H 0.11 -0.63 6.73 -2.39 -0.02 -0.65 16 29 H 0.42 -3.36 7.67 -92.71 -0.71 -4.07 16 30 H 0.22 -2.56 7.45 -2.91 -0.02 -2.59 16 31 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.11 -1.35 8.13 -2.39 -0.02 -1.37 16 33 H 0.10 -0.78 6.75 -2.38 -0.02 -0.79 16 34 H 0.10 -0.73 7.96 -2.39 -0.02 -0.75 16 35 H 0.41 -6.78 8.74 -74.06 -0.65 -7.43 16 36 H -0.30 -2.29 6.89 99.48 0.69 -1.60 16 37 H -0.31 -2.87 7.11 99.48 0.71 -2.16 16 38 H 0.12 1.77 6.74 -2.91 -0.02 1.75 16 39 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.13 -0.39 7.01 -2.39 -0.02 -0.41 16 Total: 0.00 -30.01 344.15 2.30 -27.71 By element: Atomic # 1 Polarization: -21.50 SS G_CDS: -0.22 Total: -21.72 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.37 Total: 8.39 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -4.02 Total: -3.89 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -3.14 Total: -12.62 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 2.17 Total: 0.45 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.14 Total: 1.69 kcal Total: -30.01 2.30 -27.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.068 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds