Wall clock time and date at job start Sun Mar 7 2021 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00086 * 2 1 4 4 C 1.52993 * 112.91045 * 294.01232 * 3 2 1 5 5 F 1.39897 * 109.47488 * 196.28195 * 4 3 2 6 6 F 1.39905 * 109.46977 * 316.27946 * 4 3 2 7 7 F 1.39894 * 109.47331 * 76.27709 * 4 3 2 8 8 C 1.53785 * 113.61403 * 162.76017 * 3 2 1 9 9 C 1.53787 * 87.08274 * 270.88538 * 8 3 2 10 10 H 1.08994 * 113.69382 * 89.12266 * 9 8 3 11 11 N 1.46496 * 113.61557 * 220.02309 * 9 8 3 12 12 C 1.34781 * 119.99606 * 252.49456 * 11 9 8 13 13 O 1.21576 * 119.99936 * 359.97438 * 12 11 9 14 14 C 1.47605 * 119.99734 * 179.97438 * 12 11 9 15 15 C 1.39713 * 120.09009 * 359.96005 * 14 12 11 16 16 C 1.37720 * 119.91377 * 180.02562 * 15 14 12 17 17 C 1.50694 * 119.95666 * 180.02562 * 16 15 14 18 18 C 1.38976 * 120.08701 * 0.03915 * 16 15 14 19 19 O 1.35707 * 119.91242 * 180.02562 * 18 16 15 20 20 C 1.39021 * 120.17326 * 359.97438 * 18 16 15 21 21 C 1.50708 * 119.95176 * 179.97438 * 20 18 16 22 22 O 1.42895 * 109.47026 * 285.02342 * 21 20 18 23 23 Si 1.86299 * 109.46976 * 165.02592 * 21 20 18 24 24 C 1.37670 * 120.09120 * 0.02562 * 20 18 16 25 25 C 1.53781 * 87.07772 * 334.56842 * 9 8 3 26 26 H 1.08998 * 109.47618 * 183.54921 * 1 2 3 27 27 H 1.09000 * 109.47261 * 303.55478 * 1 2 3 28 28 H 1.08998 * 109.47013 * 63.55000 * 1 2 3 29 29 H 1.08994 * 113.61700 * 156.33775 * 8 3 2 30 30 H 1.09003 * 113.61814 * 25.42785 * 8 3 2 31 31 H 0.96998 * 120.00366 * 72.48863 * 11 9 8 32 32 H 1.08002 * 120.04094 * 0.03448 * 15 14 12 33 33 H 1.08999 * 109.47416 * 270.01754 * 17 16 15 34 34 H 1.09000 * 109.47420 * 30.02294 * 17 16 15 35 35 H 1.09001 * 109.47129 * 150.02184 * 17 16 15 36 36 H 0.96699 * 114.00027 * 269.97787 * 19 18 16 37 37 H 1.08995 * 109.46850 * 45.02649 * 21 20 18 38 38 H 0.96704 * 114.00123 * 179.97438 * 22 21 20 39 39 H 1.48499 * 110.00021 * 298.68264 * 23 21 20 40 40 H 1.48502 * 109.99963 * 59.99827 * 23 21 20 41 41 H 1.08007 * 120.04621 * 179.72092 * 24 20 18 42 42 H 1.09006 * 113.61581 * 139.98184 * 25 9 8 43 43 H 1.09003 * 113.61320 * 270.88302 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7286 2.0828 -1.2873 5 9 2.6089 3.1661 -1.3800 6 9 1.9084 1.2402 -2.3896 7 9 0.4110 2.5527 -1.2696 8 6 3.4902 1.3208 0.4176 9 6 2.9985 1.4816 1.8659 10 1 2.8251 0.5348 2.3772 11 7 3.8011 2.4171 2.6576 12 6 4.6256 1.9527 3.6174 13 8 4.7029 0.7575 3.8262 14 6 5.4347 2.8952 4.4147 15 6 5.3478 4.2690 4.1757 16 6 6.1047 5.1451 4.9215 17 6 6.0114 6.6270 4.6648 18 6 6.9547 4.6642 5.9103 19 8 7.6986 5.5307 6.6434 20 6 7.0442 3.2979 6.1510 21 6 7.9680 2.7819 7.2241 22 8 9.3192 2.8554 6.7651 23 14 7.5398 1.0110 7.6132 24 6 6.2908 2.4157 5.4098 25 6 1.7222 2.1079 1.2798 26 1 -0.3634 -1.0256 0.0636 27 1 -0.3634 0.5680 0.8564 28 1 -0.3633 0.4577 -0.9201 29 1 4.0401 2.1848 0.0448 30 1 4.0057 0.3781 0.2337 31 1 3.7391 3.3707 2.4912 32 1 4.6879 4.6434 3.4071 33 1 6.7489 6.9131 3.9149 34 1 5.0124 6.8711 4.3036 35 1 6.2055 7.1690 5.5904 36 1 8.5678 5.7209 6.2648 37 1 7.8559 3.3886 8.1226 38 1 9.9702 2.5390 7.4065 39 1 6.1472 0.9251 8.1217 40 1 7.6886 0.1733 6.3961 41 1 6.3642 1.3540 5.5944 42 1 0.8102 1.8008 1.7918 43 1 1.7888 3.1873 1.1426 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:43:11 Heat of formation + Delta-G solvation = -241.538597 kcal Electronic energy + Delta-G solvation = -33442.883668 eV Core-core repulsion = 28234.491027 eV Total energy + Delta-G solvation = -5208.392641 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.122 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.30789 -48.83444 -48.77559 -42.03581 -41.32460 -40.18111 -37.78902 -37.65262 -37.40178 -34.74322 -34.10958 -31.91628 -29.10986 -28.17154 -28.07488 -26.91165 -26.86182 -25.45141 -23.57849 -22.08834 -21.74294 -21.30909 -19.85375 -19.59671 -19.57544 -19.29938 -18.70725 -18.41012 -17.87035 -17.27781 -16.85171 -16.72796 -16.55030 -16.15056 -15.97974 -15.84489 -15.66048 -15.60163 -15.46693 -15.21391 -15.16785 -15.03926 -14.94770 -14.89248 -14.64337 -14.33782 -13.99015 -13.82656 -13.74492 -13.54309 -13.39708 -13.19741 -13.05022 -12.89864 -12.74833 -12.65968 -12.59847 -12.19037 -11.83030 -11.54880 -11.35388 -11.03495 -10.43768 -10.36760 -10.09064 -9.77286 -5.08753 -0.54043 -0.06660 1.20528 1.37408 1.41533 1.54484 1.85963 1.91046 2.02680 2.38022 2.48459 2.54867 2.76152 3.04442 3.18895 3.23279 3.32154 3.43017 3.44341 3.52023 3.77563 3.84776 3.92375 4.08171 4.18578 4.22475 4.30413 4.32071 4.34321 4.36621 4.51923 4.53747 4.63605 4.65445 4.72684 4.75649 4.79616 4.91528 4.97463 5.13115 5.18699 5.23697 5.50835 5.65945 6.24604 6.65101 6.83980 6.91683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.350 6.350 3 C 0.043 3.957 4 C 0.440 3.560 5 F -0.172 7.172 6 F -0.186 7.186 7 F -0.180 7.180 8 C -0.132 4.132 9 C 0.137 3.863 10 H 0.110 0.890 11 N -0.695 5.695 12 C 0.563 3.437 13 O -0.579 6.579 14 C -0.154 4.154 15 C -0.053 4.053 16 C -0.116 4.116 17 C -0.111 4.111 18 C 0.160 3.840 19 O -0.491 6.491 20 C -0.125 4.125 21 C -0.059 4.059 22 O -0.557 6.557 23 Si 0.763 3.237 24 C -0.081 4.081 25 C -0.146 4.146 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.420 0.580 32 H 0.172 0.828 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.096 0.904 38 H 0.406 0.594 39 H -0.298 1.298 40 H -0.301 1.301 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 6.383 2.587 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.268 6.268 3 C -0.001 4.001 4 C 0.385 3.615 5 F -0.154 7.154 6 F -0.168 7.168 7 F -0.162 7.162 8 C -0.171 4.171 9 C 0.032 3.968 10 H 0.128 0.872 11 N -0.347 5.347 12 C 0.352 3.648 13 O -0.459 6.459 14 C -0.157 4.157 15 C -0.071 4.071 16 C -0.117 4.117 17 C -0.167 4.167 18 C 0.114 3.886 19 O -0.305 6.305 20 C -0.125 4.125 21 C -0.170 4.170 22 O -0.367 6.367 23 Si 0.671 3.329 24 C -0.100 4.100 25 C -0.184 4.184 26 H 0.130 0.870 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.148 0.852 30 H 0.108 0.892 31 H 0.260 0.740 32 H 0.189 0.811 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.276 0.724 37 H 0.114 0.886 38 H 0.257 0.743 39 H -0.225 1.225 40 H -0.230 1.230 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.292 4.975 2.383 5.523 hybrid contribution -0.154 0.487 -1.034 1.153 sum -0.446 5.461 1.348 5.643 Atomic orbital electron populations 1.23302 0.78405 1.05417 1.01896 1.88113 1.22384 1.22259 1.94018 1.23585 0.99957 0.86472 0.90041 1.21199 0.74339 0.78628 0.87338 1.93176 1.68895 1.56709 1.96578 1.93200 1.94980 1.71242 1.57360 1.93195 1.36784 1.89380 1.96808 1.23779 0.91503 1.06092 0.95687 1.22183 0.90462 0.94519 0.89682 0.87218 1.45618 1.42375 1.11394 1.35345 1.18378 0.79328 0.87448 0.79680 1.90799 1.67536 1.18044 1.69571 1.19780 1.01475 0.94598 0.99860 1.21425 0.97443 0.89819 0.98452 1.20536 0.97482 0.98809 0.94831 1.20795 1.04387 0.88081 1.03475 1.18399 0.93197 0.87028 0.89974 1.84603 1.33261 1.62610 1.49983 1.19860 0.99885 0.93514 0.99290 1.24431 0.84883 1.10927 0.96767 1.86383 1.14442 1.88867 1.47020 0.94741 0.81555 0.75140 0.81463 1.20967 0.95428 0.98975 0.94586 1.24023 0.99768 1.02289 0.92308 0.87050 0.91014 0.93300 0.85173 0.89195 0.74029 0.81113 0.89448 0.89258 0.90759 0.72420 0.88590 0.74278 1.22520 1.22965 0.86954 0.86939 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.82 10.33 -148.98 -1.54 -2.36 16 3 C 0.04 -0.04 0.85 -10.27 -0.01 -0.04 16 4 C 0.44 0.55 2.52 71.98 0.18 0.73 16 5 F -0.17 -0.01 15.81 44.97 0.71 0.70 16 6 F -0.19 -1.10 17.10 44.97 0.77 -0.33 16 7 F -0.18 -0.21 15.39 44.97 0.69 0.48 16 8 C -0.13 0.15 7.13 31.12 0.22 0.37 16 9 C 0.14 -0.15 4.17 45.52 0.19 0.04 16 10 H 0.11 0.45 7.46 -2.39 -0.02 0.44 16 11 N -0.70 1.31 5.30 -443.14 -2.35 -1.04 16 12 C 0.56 3.96 7.76 86.72 0.67 4.63 16 13 O -0.58 -9.64 15.94 -3.96 -0.06 -9.70 16 14 C -0.15 -0.80 5.88 -20.08 -0.12 -0.92 16 15 C -0.05 0.12 9.18 22.50 0.21 0.33 16 16 C -0.12 0.17 5.89 -19.81 -0.12 0.06 16 17 C -0.11 0.76 9.78 71.23 0.70 1.46 16 18 C 0.16 0.33 6.66 22.63 0.15 0.48 16 19 O -0.49 0.54 11.84 -90.28 -1.07 -0.53 16 20 C -0.12 -0.70 5.30 -19.81 -0.11 -0.81 16 21 C -0.06 -0.07 2.36 71.24 0.17 0.10 16 22 O -0.56 0.58 12.86 -148.98 -1.92 -1.33 16 23 Si 0.76 1.94 30.20 68.60 2.07 4.01 16 24 C -0.08 -0.76 8.19 22.50 0.18 -0.57 16 25 C -0.15 0.86 6.66 31.12 0.21 1.07 16 26 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H 0.07 -0.42 6.58 -2.39 -0.02 -0.43 16 28 H 0.05 -0.07 6.63 -2.39 -0.02 -0.09 16 29 H 0.13 -0.56 7.01 -2.39 -0.02 -0.58 16 30 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.42 -3.96 6.75 -92.71 -0.63 -4.58 16 32 H 0.17 -1.85 6.39 -2.91 -0.02 -1.87 16 33 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.09 -0.89 8.08 -2.39 -0.02 -0.91 16 35 H 0.07 -0.39 7.52 -2.39 -0.02 -0.41 16 36 H 0.41 -3.34 9.06 -74.06 -0.67 -4.01 16 37 H 0.10 -0.18 7.82 -2.39 -0.02 -0.19 16 38 H 0.41 -4.52 8.74 -74.05 -0.65 -5.17 16 39 H -0.30 -2.86 7.11 99.48 0.71 -2.16 16 40 H -0.30 -3.50 6.74 99.48 0.67 -2.83 16 41 H 0.11 1.56 4.47 -2.91 -0.01 1.55 16 42 H 0.11 -0.84 6.68 -2.38 -0.02 -0.86 16 43 H 0.13 -1.41 8.03 -2.39 -0.02 -1.43 16 Total: 0.00 -26.88 366.95 0.20 -26.69 By element: Atomic # 1 Polarization: -23.86 SS G_CDS: -0.81 Total: -24.68 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 3.70 Total: 8.08 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: -2.35 Total: -1.04 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -4.59 Total: -13.92 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 2.17 Total: 0.86 kcal Atomic # 14 Polarization: 1.94 SS G_CDS: 2.07 Total: 4.01 kcal Total: -26.88 0.20 -26.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.852 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds