Wall clock time and date at job start Sun Mar 7 2021 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99920 * 2 1 4 4 C 1.52993 * 112.85167 * 66.08343 * 3 2 1 5 5 F 1.39904 * 109.47235 * 283.55011 * 4 3 2 6 6 F 1.39898 * 109.47374 * 43.55080 * 4 3 2 7 7 F 1.39899 * 109.47278 * 163.55426 * 4 3 2 8 8 C 1.53780 * 113.61380 * 294.88331 * 3 2 1 9 9 C 1.53790 * 87.08147 * 270.80253 * 8 3 2 10 10 H 1.08997 * 113.61378 * 89.20493 * 9 8 3 11 11 N 1.46501 * 113.61052 * 220.01884 * 9 8 3 12 12 C 1.34775 * 119.99567 * 204.99779 * 11 9 8 13 13 O 1.21592 * 120.00069 * 0.02562 * 12 11 9 14 14 C 1.47538 * 120.00150 * 180.02562 * 12 11 9 15 15 C 1.40135 * 120.19463 * 179.97438 * 14 12 11 16 16 O 1.35650 * 120.14995 * 0.02562 * 15 14 12 17 17 C 1.38710 * 119.70078 * 179.76829 * 15 14 12 18 18 C 1.38051 * 120.08268 * 0.51222 * 17 15 14 19 19 C 1.50707 * 119.80472 * 179.76282 * 18 17 15 20 20 O 1.42895 * 109.46735 * 64.72899 * 19 18 17 21 21 Si 1.86302 * 109.46811 * 184.72341 * 19 18 17 22 22 C 1.38553 * 120.38938 * 359.48642 * 18 17 15 23 23 C 1.37779 * 120.30002 * 0.25839 * 22 18 17 24 24 C 1.53784 * 87.08084 * 334.56826 * 9 8 3 25 25 H 1.08998 * 109.47175 * 62.46557 * 1 2 3 26 26 H 1.09003 * 109.47319 * 182.46796 * 1 2 3 27 27 H 1.09002 * 109.47364 * 302.46725 * 1 2 3 28 28 H 1.08997 * 113.61477 * 156.25613 * 8 3 2 29 29 H 1.09001 * 113.61550 * 25.34927 * 8 3 2 30 30 H 0.96997 * 120.00796 * 25.00543 * 11 9 8 31 31 H 0.96706 * 114.00218 * 89.99733 * 16 15 14 32 32 H 1.07999 * 119.96267 * 180.25134 * 17 15 14 33 33 H 1.08992 * 109.47405 * 304.72443 * 19 18 17 34 34 H 0.96693 * 114.00662 * 60.00094 * 20 19 18 35 35 H 1.48510 * 109.99625 * 179.97438 * 21 19 18 36 36 H 1.48496 * 110.00364 * 301.31918 * 21 19 18 37 37 H 1.08001 * 119.84899 * 180.22824 * 22 18 17 38 38 H 1.08005 * 120.04898 * 179.97438 * 23 22 18 39 39 H 1.08992 * 113.61310 * 139.98078 * 24 9 8 40 40 H 1.09002 * 113.61367 * 270.88547 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7297 2.0807 1.2888 5 9 0.4130 2.5534 1.2715 6 9 1.9073 1.2356 2.3894 7 9 2.6121 3.1621 1.3840 8 6 1.7191 2.1093 -1.2782 9 6 2.9953 1.4852 -1.8672 10 1 2.8222 0.5389 -2.3795 11 7 3.7955 2.4228 -2.6590 12 6 4.6190 1.9606 -3.6206 13 8 4.6975 0.7657 -3.8312 14 6 5.4253 2.9047 -4.4177 15 6 6.2833 2.4286 -5.4182 16 8 6.3763 1.0969 -5.6590 17 6 7.0331 3.3256 -6.1647 18 6 6.9413 4.6802 -5.9150 19 6 7.7628 5.6488 -6.7263 20 8 7.3410 5.6045 -8.0908 21 14 7.5280 7.3725 -6.0595 22 6 6.0942 5.1549 -4.9266 23 6 5.3383 4.2785 -4.1791 24 6 3.4895 1.3231 -0.4199 25 1 -0.3633 0.4751 -0.9112 26 1 -0.3634 -1.0267 0.0443 27 1 -0.3634 0.5517 0.8670 28 1 1.7846 3.1885 -1.1398 29 1 0.8067 1.8017 -1.7892 30 1 3.7327 3.3761 -2.4912 31 1 5.7489 0.7717 -6.3191 32 1 7.6926 2.9636 -6.9395 33 1 8.8157 5.3748 -6.6623 34 1 6.4120 5.8376 -8.2232 35 1 8.3335 8.3372 -6.8507 36 1 6.0918 7.7461 -6.1117 37 1 6.0265 6.2167 -4.7411 38 1 4.6796 4.6529 -3.4094 39 1 4.0063 0.3809 -0.2380 40 1 4.0390 2.1874 -0.0468 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:43:28 Heat of formation + Delta-G solvation = -233.831480 kcal Electronic energy + Delta-G solvation = -31237.520929 eV Core-core repulsion = 26185.000113 eV Total energy + Delta-G solvation = -5052.520816 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.26457 -48.79005 -48.73342 -41.89125 -41.11695 -39.71895 -38.49542 -37.32250 -37.19270 -34.54424 -32.58602 -31.08996 -29.13994 -28.11432 -27.43818 -26.80148 -24.48950 -23.89789 -23.08511 -21.68217 -21.37640 -19.83002 -19.54566 -19.35781 -19.25889 -18.68843 -18.27809 -17.43297 -17.10159 -16.74992 -16.55822 -16.36619 -16.10692 -15.95519 -15.81026 -15.76219 -15.61422 -15.53225 -15.26321 -15.16498 -14.91647 -14.89338 -14.80370 -14.57605 -14.37561 -13.73789 -13.72705 -13.35117 -13.19946 -13.08899 -12.95540 -12.65568 -12.54654 -12.35751 -12.13762 -11.75752 -11.57822 -11.06625 -10.91466 -10.62352 -10.29992 -10.02403 -9.77794 -4.88264 -0.41050 0.16770 1.29265 1.44329 1.61977 1.68130 2.00029 2.00978 2.09772 2.52379 2.57304 2.62024 2.83680 3.12259 3.25554 3.39024 3.42388 3.49181 3.52154 3.69689 3.78857 4.00188 4.09981 4.25367 4.26397 4.29077 4.39509 4.42511 4.43917 4.59563 4.65403 4.71530 4.77989 4.81154 4.82840 5.04408 5.15841 5.26345 5.33055 5.61333 5.71572 6.43278 6.47871 6.71979 7.13334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.350 6.350 3 C 0.042 3.958 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.187 7.187 7 F -0.172 7.172 8 C -0.146 4.146 9 C 0.142 3.858 10 H 0.110 0.890 11 N -0.701 5.701 12 C 0.560 3.440 13 O -0.560 6.560 14 C -0.179 4.179 15 C 0.153 3.847 16 O -0.499 6.499 17 C -0.141 4.141 18 C -0.069 4.069 19 C -0.094 4.094 20 O -0.548 6.548 21 Si 0.778 3.222 22 C -0.133 4.133 23 C -0.051 4.051 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.418 0.582 31 H 0.407 0.593 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.388 0.612 35 H -0.309 1.309 36 H -0.267 1.267 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.088 0.912 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 6.377 0.370 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.268 6.268 3 C -0.002 4.002 4 C 0.384 3.616 5 F -0.162 7.162 6 F -0.169 7.169 7 F -0.153 7.153 8 C -0.184 4.184 9 C 0.036 3.964 10 H 0.128 0.872 11 N -0.354 5.354 12 C 0.348 3.652 13 O -0.439 6.439 14 C -0.183 4.183 15 C 0.107 3.893 16 O -0.312 6.312 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.202 4.202 20 O -0.356 6.356 21 Si 0.682 3.318 22 C -0.151 4.151 23 C -0.070 4.070 24 C -0.172 4.172 25 H 0.090 0.910 26 H 0.128 0.872 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.258 0.742 31 H 0.267 0.733 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.238 0.762 35 H -0.237 1.237 36 H -0.193 1.193 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.106 0.894 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.285 5.989 0.406 6.423 hybrid contribution -1.228 -0.184 -0.874 1.519 sum -3.514 5.805 -0.468 6.801 Atomic orbital electron populations 1.23303 0.78485 1.05239 1.02033 1.88109 1.22312 1.22385 1.94029 1.23626 1.00146 0.86417 0.89969 1.21261 0.74287 0.78627 0.87455 1.93189 1.36938 1.89293 1.96824 1.93196 1.95005 1.71116 1.57555 1.93176 1.68746 1.56842 1.96573 1.24019 0.99953 1.02205 0.92250 1.22087 0.90230 0.94501 0.89540 0.87235 1.45650 1.42890 1.11181 1.35674 1.18331 0.79295 0.87682 0.79872 1.90832 1.66480 1.17576 1.68963 1.20415 1.01481 0.94940 1.01445 1.18760 0.93420 0.83753 0.93394 1.84722 1.62254 1.19127 1.65050 1.21347 1.01398 0.92746 1.00450 1.20481 0.96455 0.93894 0.96159 1.25456 1.01608 1.09127 0.84001 1.86606 1.33440 1.91176 1.24392 0.93912 0.78910 0.70885 0.88067 1.21280 0.96610 1.01318 0.95847 1.21510 0.97345 0.89795 0.98304 1.23790 0.91312 1.05964 0.96085 0.91018 0.87199 0.93245 0.84993 0.87104 0.74243 0.73347 0.84923 0.85846 0.76223 1.23745 1.19278 0.82067 0.81135 0.89374 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.50 10.33 -148.98 -1.54 -2.04 16 3 C 0.04 -0.08 0.85 -10.27 -0.01 -0.09 16 4 C 0.44 0.19 2.51 71.98 0.18 0.37 16 5 F -0.18 -0.08 15.24 44.97 0.69 0.61 16 6 F -0.19 -0.98 17.09 44.97 0.77 -0.21 16 7 F -0.17 0.15 15.82 44.97 0.71 0.86 16 8 C -0.15 1.09 6.67 31.12 0.21 1.30 16 9 C 0.14 -0.46 4.18 45.52 0.19 -0.27 16 10 H 0.11 0.21 7.46 -2.39 -0.02 0.19 16 11 N -0.70 3.43 5.31 -443.18 -2.35 1.08 16 12 C 0.56 1.59 7.76 86.70 0.67 2.26 16 13 O -0.56 -6.66 14.76 16.91 0.25 -6.41 16 14 C -0.18 0.00 5.89 -20.01 -0.12 -0.12 16 15 C 0.15 0.51 6.72 22.84 0.15 0.67 16 16 O -0.50 -3.32 11.58 -68.73 -0.80 -4.12 16 17 C -0.14 -0.10 9.60 22.34 0.21 0.11 16 18 C -0.07 0.24 5.36 -19.83 -0.11 0.14 16 19 C -0.09 0.37 2.80 71.24 0.20 0.57 16 20 O -0.55 0.20 12.83 -148.98 -1.91 -1.71 16 21 Si 0.78 -5.03 29.86 68.60 2.05 -2.98 16 22 C -0.13 1.00 8.64 22.24 0.19 1.19 16 23 C -0.05 0.38 9.53 22.52 0.21 0.60 16 24 C -0.13 0.33 7.13 31.12 0.22 0.55 16 25 H 0.07 -0.48 6.75 -2.39 -0.02 -0.50 16 26 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.05 -0.11 6.25 -2.39 -0.01 -0.13 16 28 H 0.13 -1.58 8.04 -2.39 -0.02 -1.60 16 29 H 0.11 -0.98 6.73 -2.39 -0.02 -1.00 16 30 H 0.42 -5.11 6.76 -92.71 -0.63 -5.74 16 31 H 0.41 -0.05 9.06 -74.05 -0.67 -0.73 16 32 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 33 H 0.12 -0.54 7.96 -2.39 -0.02 -0.56 16 34 H 0.39 -2.60 8.70 -74.06 -0.64 -3.25 16 35 H -0.31 -0.84 7.11 99.48 0.71 -0.13 16 36 H -0.27 1.29 7.00 99.48 0.70 1.98 16 37 H 0.16 -2.03 4.81 -2.91 -0.01 -2.05 16 38 H 0.17 -2.65 6.40 -2.91 -0.02 -2.67 16 39 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.13 -0.72 7.01 -2.39 -0.02 -0.74 16 Total: 0.00 -24.26 345.27 0.51 -23.75 By element: Atomic # 1 Polarization: -16.52 SS G_CDS: -0.75 Total: -17.27 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 3.40 Total: 8.44 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -2.35 Total: 1.08 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -4.00 Total: -14.27 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 2.17 Total: 1.26 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: 2.05 Total: -2.98 kcal Total: -24.26 0.51 -23.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.080 kcal (2) G-P(sol) polarization free energy of solvation -24.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds