Wall clock time and date at job start Sun Mar 7 2021 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00295 * 2 1 4 4 C 1.52998 * 112.84921 * 65.99622 * 3 2 1 5 5 F 1.39902 * 109.47238 * 283.65504 * 4 3 2 6 6 F 1.39897 * 109.47104 * 43.65473 * 4 3 2 7 7 F 1.39901 * 109.47423 * 163.65334 * 4 3 2 8 8 C 1.53781 * 113.61618 * 294.80220 * 3 2 1 9 9 C 1.53785 * 87.08021 * 270.88008 * 8 3 2 10 10 H 1.09000 * 113.61016 * 89.20045 * 9 8 3 11 11 N 1.46506 * 113.61469 * 220.01897 * 9 8 3 12 12 C 1.34770 * 119.99857 * 205.00313 * 11 9 8 13 13 O 1.21710 * 120.00089 * 359.97438 * 12 11 9 14 14 C 1.46585 * 120.00284 * 180.02562 * 12 11 9 15 15 C 1.36642 * 125.46041 * 179.97438 * 14 12 11 16 16 C 1.37481 * 113.29595 * 179.79440 * 15 14 12 17 17 C 1.50694 * 122.45102 * 180.26369 * 16 15 14 18 18 C 1.33816 * 115.09780 * 0.42325 * 16 15 14 19 19 C 1.50706 * 124.52350 * 179.85298 * 18 16 15 20 20 O 1.42894 * 109.46892 * 111.75220 * 19 18 16 21 21 Si 1.86291 * 109.47465 * 231.75490 * 19 18 16 22 22 S 1.70615 * 110.95733 * 359.58781 * 18 16 15 23 23 C 1.53784 * 87.08237 * 334.56542 * 9 8 3 24 24 H 1.09001 * 109.47576 * 62.45927 * 1 2 3 25 25 H 1.09000 * 109.47313 * 182.46115 * 1 2 3 26 26 H 1.09003 * 109.46668 * 302.46272 * 1 2 3 27 27 H 1.09001 * 113.61411 * 156.33496 * 8 3 2 28 28 H 1.08993 * 113.61653 * 25.43128 * 8 3 2 29 29 H 0.96999 * 119.99809 * 24.99848 * 11 9 8 30 30 H 1.07998 * 123.35301 * 0.04040 * 15 14 12 31 31 H 1.08997 * 109.47176 * 264.57116 * 17 16 15 32 32 H 1.09001 * 109.47258 * 24.57165 * 17 16 15 33 33 H 1.09002 * 109.47094 * 144.57439 * 17 16 15 34 34 H 1.09002 * 109.46817 * 351.75559 * 19 18 16 35 35 H 0.96701 * 114.00403 * 60.00724 * 20 19 18 36 36 H 1.48501 * 110.00008 * 58.67578 * 21 19 18 37 37 H 1.48499 * 110.00083 * 179.97438 * 21 19 18 38 38 H 1.08997 * 113.61277 * 139.97852 * 23 9 8 39 39 H 1.08997 * 113.61615 * 270.88355 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7279 2.0814 1.2880 5 9 0.4106 2.5521 1.2697 6 9 1.9063 1.2376 2.3894 7 9 2.6088 3.1642 1.3827 8 6 1.7209 2.1086 -1.2790 9 6 2.9967 1.4825 -1.8667 10 1 2.8227 0.5359 -2.3783 11 7 3.7986 2.4184 -2.6588 12 6 4.6220 1.9545 -3.6195 13 8 4.6999 0.7580 -3.8288 14 6 5.4248 2.8908 -4.4118 15 6 6.2926 2.5442 -5.4087 16 6 6.9124 3.6249 -5.9901 17 6 7.9051 3.4794 -7.1145 18 6 6.5722 4.8153 -5.4822 19 6 7.1234 6.1353 -5.9565 20 8 6.0878 6.8800 -6.6007 21 14 7.7668 7.0997 -4.4983 22 16 5.4257 4.6398 -4.2310 23 6 3.4898 1.3210 -0.4190 24 1 -0.3634 0.4752 -0.9112 25 1 -0.3634 -1.0267 0.0441 26 1 -0.3633 0.5516 0.8671 27 1 1.7877 3.1878 -1.1414 28 1 0.8085 1.8018 -1.7903 29 1 3.7367 3.3719 -2.4918 30 1 6.4708 1.5233 -5.7125 31 1 8.9162 3.4707 -6.7077 32 1 7.7189 2.5455 -7.6450 33 1 7.7981 4.3166 -7.8043 34 1 7.9355 5.9577 -6.6615 35 1 5.3310 7.0750 -6.0312 36 1 8.8222 6.3220 -3.8008 37 1 8.3136 8.4033 -4.9529 38 1 4.0054 0.3782 -0.2360 39 1 4.0401 2.1848 -0.0463 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16772210_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:45:25 Heat of formation + Delta-G solvation = -194.187940 kcal Electronic energy + Delta-G solvation = -29339.691170 eV Core-core repulsion = 24541.186246 eV Total energy + Delta-G solvation = -4798.504924 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.079 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.25346 -48.77867 -48.72192 -41.69949 -40.50158 -39.59813 -37.63915 -37.30384 -34.53452 -32.42526 -29.87397 -29.20604 -28.10793 -26.86487 -26.79887 -24.71687 -23.52625 -21.94984 -21.38903 -20.21748 -19.73023 -19.54741 -19.49636 -19.14780 -17.82370 -17.54367 -17.11580 -17.01209 -16.54172 -16.17038 -16.05129 -15.78739 -15.70664 -15.61038 -15.54601 -15.23808 -15.13820 -14.91938 -14.86938 -14.85464 -14.61084 -14.31973 -14.21834 -13.75334 -13.49458 -13.36829 -13.19826 -13.10476 -13.01754 -12.66123 -12.56792 -12.43593 -12.26660 -11.95329 -11.76180 -11.35541 -10.97211 -10.76922 -10.36240 -9.72126 -9.41707 -5.18145 -0.70625 0.30812 0.68387 1.05293 1.24537 1.43802 1.59469 1.88671 1.93543 1.99939 2.10053 2.54176 2.60876 2.83174 3.25538 3.36223 3.38055 3.50417 3.55713 3.66531 3.98686 4.06172 4.17273 4.25705 4.27902 4.39191 4.39869 4.42083 4.44692 4.59690 4.67662 4.70438 4.76397 4.81721 4.84422 4.94251 5.23240 5.24558 5.34597 5.71910 6.27376 6.60837 6.95978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.349 6.349 3 C 0.042 3.958 4 C 0.439 3.561 5 F -0.181 7.181 6 F -0.187 7.187 7 F -0.172 7.172 8 C -0.148 4.148 9 C 0.140 3.860 10 H 0.114 0.886 11 N -0.702 5.702 12 C 0.595 3.405 13 O -0.566 6.566 14 C -0.286 4.286 15 C -0.057 4.057 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.242 4.242 19 C -0.038 4.038 20 O -0.546 6.546 21 Si 0.759 3.241 22 S 0.283 5.717 23 C -0.133 4.133 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.415 0.585 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.394 0.606 36 H -0.283 1.283 37 H -0.277 1.277 38 H 0.092 0.908 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 5.151 0.310 5.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.267 6.267 3 C -0.001 4.001 4 C 0.384 3.616 5 F -0.162 7.162 6 F -0.168 7.168 7 F -0.153 7.153 8 C -0.186 4.186 9 C 0.035 3.965 10 H 0.132 0.868 11 N -0.353 5.353 12 C 0.383 3.617 13 O -0.446 6.446 14 C -0.406 4.406 15 C -0.091 4.091 16 C -0.126 4.126 17 C -0.162 4.162 18 C -0.361 4.361 19 C -0.149 4.149 20 O -0.354 6.354 21 Si 0.662 3.338 22 S 0.553 5.447 23 C -0.171 4.171 24 H 0.090 0.910 25 H 0.128 0.872 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.244 0.756 36 H -0.209 1.209 37 H -0.203 1.203 38 H 0.110 0.890 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.289 5.530 1.047 6.076 hybrid contribution 0.743 -1.086 -0.964 1.632 sum -1.546 4.444 0.082 4.706 Atomic orbital electron populations 1.23310 0.78467 1.05258 1.02064 1.88109 1.22320 1.22261 1.94024 1.23596 1.00072 0.86454 0.89967 1.21236 0.74322 0.78632 0.87397 1.93191 1.36844 1.89347 1.96815 1.93197 1.94995 1.71172 1.57458 1.93179 1.68841 1.56744 1.96571 1.24038 0.99927 1.02271 0.92348 1.22192 0.90273 0.94456 0.89615 0.86771 1.45619 1.42927 1.11052 1.35686 1.17142 0.78702 0.86811 0.79085 1.90854 1.67257 1.17090 1.69397 1.24526 1.09510 0.99025 1.07561 1.20743 0.93911 1.00756 0.93729 1.18801 1.01831 0.91126 1.00813 1.20643 0.96925 1.03598 0.94997 1.24720 1.06509 1.00503 1.04408 1.24753 0.94396 0.89403 1.06388 1.86551 1.32111 1.73891 1.42818 0.94283 0.85537 0.76915 0.77063 1.82197 1.36272 0.96850 1.29389 1.23790 0.91424 1.06182 0.95701 0.90999 0.87180 0.93222 0.84994 0.86870 0.74689 0.83581 0.90369 0.90630 0.90769 0.85833 0.75552 1.20916 1.20298 0.88970 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.34 10.33 -148.98 -1.54 -1.88 16 3 C 0.04 -0.09 0.85 -10.27 -0.01 -0.10 16 4 C 0.44 0.08 2.51 71.98 0.18 0.26 16 5 F -0.18 -0.04 15.23 44.97 0.69 0.65 16 6 F -0.19 -0.91 17.10 44.97 0.77 -0.14 16 7 F -0.17 0.17 15.82 44.97 0.71 0.89 16 8 C -0.15 1.07 6.68 31.12 0.21 1.28 16 9 C 0.14 -0.42 4.17 45.52 0.19 -0.23 16 10 H 0.11 0.18 7.46 -2.39 -0.02 0.16 16 11 N -0.70 2.55 5.35 -444.06 -2.38 0.17 16 12 C 0.60 2.17 7.78 86.42 0.67 2.85 16 13 O -0.57 -7.01 16.44 -4.38 -0.07 -7.09 16 14 C -0.29 -0.30 6.45 24.08 0.16 -0.14 16 15 C -0.06 -0.17 9.78 21.72 0.21 0.05 16 16 C -0.11 -0.08 5.78 -21.05 -0.12 -0.20 16 17 C -0.10 0.16 9.45 71.23 0.67 0.83 16 18 C -0.24 0.53 4.85 24.68 0.12 0.65 16 19 C -0.04 0.12 2.75 71.24 0.20 0.32 16 20 O -0.55 1.64 12.88 -148.98 -1.92 -0.28 16 21 Si 0.76 -3.39 32.08 68.60 2.20 -1.19 16 22 S 0.28 -1.83 20.77 -56.49 -1.17 -3.00 16 23 C -0.13 0.37 7.13 31.12 0.22 0.60 16 24 H 0.07 -0.50 6.76 -2.39 -0.02 -0.52 16 25 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.05 -0.13 6.24 -2.39 -0.01 -0.14 16 27 H 0.13 -1.53 8.04 -2.39 -0.02 -1.55 16 28 H 0.11 -1.01 6.74 -2.39 -0.02 -1.02 16 29 H 0.42 -4.08 7.84 -92.71 -0.73 -4.81 16 30 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 -0.16 8.10 -2.39 -0.02 -0.18 16 33 H 0.07 -0.15 7.05 -2.39 -0.02 -0.16 16 34 H 0.12 -0.32 6.30 -2.39 -0.02 -0.33 16 35 H 0.39 -4.51 8.70 -74.06 -0.64 -5.15 16 36 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 37 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 38 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.13 -0.76 7.02 -2.39 -0.02 -0.77 16 Total: 0.00 -19.85 351.57 0.98 -18.87 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: -0.19 Total: -14.33 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 3.88 Total: 7.32 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -2.38 Total: 0.17 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -3.53 Total: -9.24 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 2.17 Total: 1.39 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.20 Total: -1.19 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -1.17 Total: -3.00 kcal Total: -19.85 0.98 -18.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16772210_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.321 kcal (2) G-P(sol) polarization free energy of solvation -19.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds