Wall clock time and date at job start Sun Mar 7 2021 09:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86294 * 109.93097 * 2 1 4 4 C 1.87381 * 109.94509 * 238.83112 * 2 1 3 5 5 C 1.53967 * 107.17299 * 286.08700 * 4 2 1 6 6 C 1.52524 * 109.68082 * 300.90489 * 5 4 2 7 7 C 1.53006 * 109.04376 * 316.44048 * 6 5 4 8 8 N 1.46494 * 109.47261 * 183.05747 * 7 6 5 9 9 C 1.34778 * 119.99933 * 179.80379 * 8 7 6 10 10 O 1.21691 * 120.00410 * 359.97438 * 9 8 7 11 11 C 1.46679 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.37875 * 126.23428 * 179.68704 * 11 9 8 13 13 C 1.39837 * 107.08640 * 179.84645 * 12 11 9 14 14 C 1.35445 * 107.86440 * 0.42259 * 13 12 11 15 15 C 1.50699 * 125.56793 * 179.72008 * 14 13 12 16 16 O 1.42896 * 109.47633 * 120.01665 * 15 14 13 17 17 Si 1.86301 * 109.46707 * 0.02562 * 15 14 13 18 18 H 1.48499 * 109.47358 * 59.99772 * 17 15 14 19 19 H 1.48502 * 109.47500 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47358 * 300.00052 * 17 15 14 21 21 N 1.35543 * 108.87381 * 359.73739 * 14 13 12 22 22 C 1.50698 * 109.04547 * 197.56374 * 6 5 4 23 23 C 1.38239 * 119.99981 * 243.82300 * 22 6 5 24 24 C 1.38237 * 120.00128 * 179.80831 * 23 22 6 25 25 C 1.38236 * 119.99753 * 0.41974 * 24 23 22 26 26 C 1.38233 * 120.00197 * 359.81382 * 25 24 23 27 27 C 1.38236 * 119.99992 * 359.97438 * 26 25 24 28 28 C 1.52522 * 111.65502 * 77.00036 * 6 5 4 29 29 C 1.53713 * 109.64157 * 283.00968 * 28 6 5 30 30 H 1.08999 * 109.47008 * 60.00040 * 1 2 3 31 31 H 1.08997 * 109.47027 * 299.99110 * 1 2 3 32 32 H 1.09007 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47277 * 60.00679 * 3 2 1 34 34 H 1.09003 * 109.47352 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47552 * 300.00068 * 3 2 1 36 36 H 1.09001 * 109.89685 * 45.59305 * 4 2 1 37 37 H 1.08998 * 109.89473 * 166.71405 * 4 2 1 38 38 H 1.09005 * 109.41527 * 180.84988 * 5 4 2 39 39 H 1.08997 * 109.43186 * 60.97240 * 5 4 2 40 40 H 1.08999 * 109.47134 * 303.06279 * 7 6 5 41 41 H 1.08997 * 109.46937 * 63.05832 * 7 6 5 42 42 H 0.96999 * 120.00337 * 359.80236 * 8 7 6 43 43 H 1.08003 * 126.45208 * 0.02562 * 12 11 9 44 44 H 1.08001 * 126.06566 * 180.15262 * 13 12 11 45 45 H 1.09002 * 109.47370 * 240.02522 * 15 14 13 46 46 H 0.96702 * 113.99970 * 300.00555 * 16 15 14 47 47 H 0.96995 * 125.67529 * 179.97438 * 21 14 13 48 48 H 1.07998 * 119.99805 * 0.02562 * 23 22 6 49 49 H 1.08000 * 119.99648 * 180.21205 * 24 23 22 50 50 H 1.08000 * 119.99939 * 179.78584 * 25 24 23 51 51 H 1.07999 * 120.00000 * 179.97438 * 26 25 24 52 52 H 1.07997 * 120.00034 * 179.97438 * 27 26 25 53 53 H 1.09006 * 109.44359 * 162.96301 * 28 6 5 54 54 H 1.09000 * 109.44130 * 43.06624 * 28 6 5 55 55 H 1.08998 * 109.89557 * 299.68323 * 29 28 6 56 56 H 1.09007 * 109.89229 * 178.57107 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4981 1.7514 0.0000 4 6 2.5022 -0.9116 -1.5072 5 6 2.2741 -2.4142 -1.2602 6 6 3.0139 -2.8454 0.0020 7 6 4.4096 -2.2184 0.0015 8 7 5.1548 -2.6847 1.1733 9 6 6.4184 -2.2636 1.3798 10 8 6.9404 -1.4964 0.5925 11 6 7.1648 -2.7310 2.5528 12 6 8.4587 -2.3896 2.8845 13 6 8.7670 -3.0556 4.0748 14 6 7.6836 -3.7836 4.4362 15 6 7.5845 -4.6605 5.6578 16 8 6.5199 -4.1979 6.4913 17 14 9.1882 -4.5914 6.6035 18 1 9.4577 -3.1915 7.0194 19 1 9.0909 -5.4559 7.8070 20 1 10.2946 -5.0721 5.7375 21 7 6.7030 -3.5951 3.5197 22 6 3.1511 -4.3461 0.0030 23 6 2.5320 -5.0961 0.9855 24 6 2.6545 -6.4730 0.9842 25 6 3.4034 -7.0993 0.0055 26 6 4.0266 -6.3491 -0.9741 27 6 3.9004 -4.9725 -0.9754 28 6 2.2742 -2.4124 1.2636 29 6 2.5023 -0.9119 1.5069 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.1390 2.2681 0.8900 34 1 3.5881 1.7427 0.0005 35 1 2.1389 2.2682 -0.8900 36 1 1.9546 -0.5922 -2.3938 37 1 3.5664 -0.7145 -1.6362 38 1 2.6483 -2.9823 -2.1120 39 1 1.2077 -2.6039 -1.1384 40 1 4.9388 -2.5104 -0.9056 41 1 4.3201 -1.1327 0.0363 42 1 4.7389 -3.2966 1.8007 43 1 9.1102 -1.7296 2.3310 44 1 9.7044 -3.0027 4.6086 45 1 7.3867 -5.6880 5.3525 46 1 6.6297 -3.2884 6.8010 47 1 5.8227 -4.0017 3.5413 48 1 1.9496 -4.6065 1.7520 49 1 2.1680 -7.0592 1.7498 50 1 3.5021 -8.1748 0.0065 51 1 4.6120 -6.8383 -1.7385 52 1 4.3875 -4.3863 -1.7405 53 1 2.6484 -2.9791 2.1162 54 1 1.2078 -2.6023 1.1421 55 1 3.5665 -0.7146 1.6360 56 1 1.9547 -0.5925 2.3937 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16806646_6580494.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:53 Heat of formation + Delta-G solvation = -35.506636 kcal Electronic energy + Delta-G solvation = -35285.461644 eV Core-core repulsion = 31090.343238 eV Total energy + Delta-G solvation = -4195.118406 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.194 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.57351 -41.60410 -39.98929 -38.34248 -37.65849 -35.08174 -32.57102 -32.23909 -31.92018 -31.50832 -31.34583 -29.24315 -28.64482 -28.13954 -26.77823 -25.93529 -24.24834 -23.05533 -22.84602 -22.42511 -21.56647 -21.20348 -20.25464 -19.32808 -18.20764 -18.10001 -17.24210 -16.82388 -16.51348 -16.38629 -16.01270 -15.72513 -15.68668 -15.26085 -15.19542 -15.15961 -14.83073 -14.69838 -14.40063 -14.34148 -14.27695 -14.09009 -13.93421 -13.83186 -13.71387 -13.52061 -13.27090 -13.24828 -13.18383 -13.13358 -12.97565 -12.66160 -12.36088 -12.29722 -12.15771 -12.09623 -11.91072 -11.82690 -11.58459 -11.46434 -11.31795 -10.71849 -10.64498 -10.42659 -10.24835 -10.09808 -10.06717 -9.82156 -9.62435 -9.27540 0.29989 0.42182 0.48762 1.10690 1.50298 1.57742 1.63449 1.85743 1.90863 1.94190 1.99860 2.04310 2.19969 2.27972 2.68282 2.84301 3.47547 3.50273 3.59801 3.62357 3.79181 3.92018 4.06039 4.13986 4.17468 4.22079 4.27310 4.31425 4.39775 4.49574 4.53976 4.57115 4.58049 4.64063 4.73386 4.75474 4.76968 4.78946 4.84921 4.86000 4.87146 4.93207 4.94717 5.05765 5.12120 5.14210 5.20044 5.23197 5.24107 5.28696 5.48567 5.51048 5.54988 5.57602 5.61277 5.64514 5.67669 5.70718 5.76241 6.10100 6.27433 6.45401 6.61047 7.04127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.041 2.959 3 C -0.469 4.469 4 C -0.423 4.423 5 C -0.092 4.092 6 C -0.023 4.023 7 C 0.126 3.874 8 N -0.707 5.707 9 C 0.586 3.414 10 O -0.571 6.571 11 C -0.063 4.063 12 C -0.118 4.118 13 C -0.217 4.217 14 C 0.032 3.968 15 C -0.061 4.061 16 O -0.550 6.550 17 Si 1.010 2.990 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.259 1.259 21 N -0.509 5.509 22 C -0.077 4.077 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.103 4.103 29 C -0.416 4.416 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.404 0.596 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.133 0.867 46 H 0.392 0.608 47 H 0.427 0.573 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.130 0.870 51 H 0.124 0.876 52 H 0.116 0.884 53 H 0.075 0.925 54 H 0.088 0.912 55 H 0.069 0.931 56 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -2.873 3.558 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.234 2.766 3 C -0.575 4.575 4 C -0.508 4.508 5 C -0.129 4.129 6 C -0.023 4.023 7 C 0.004 3.996 8 N -0.358 5.358 9 C 0.375 3.625 10 O -0.450 6.450 11 C -0.177 4.177 12 C -0.145 4.145 13 C -0.242 4.242 14 C -0.087 4.087 15 C -0.171 4.171 16 O -0.357 6.357 17 Si 0.832 3.168 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.183 1.183 21 N -0.106 5.106 22 C -0.077 4.077 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.501 4.501 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.241 0.759 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.151 0.849 46 H 0.242 0.758 47 H 0.267 0.733 48 H 0.165 0.835 49 H 0.155 0.845 50 H 0.147 0.853 51 H 0.142 0.858 52 H 0.134 0.866 53 H 0.093 0.907 54 H 0.106 0.894 55 H 0.088 0.912 56 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.500 -2.926 3.277 5.618 hybrid contribution -0.373 0.143 -0.465 0.613 sum -3.873 -2.783 2.812 5.537 Atomic orbital electron populations 1.26159 1.20580 1.04839 1.04415 0.78883 0.66578 0.64823 0.66326 1.26356 1.05960 1.20821 1.04342 1.26609 1.06287 1.02283 1.15584 1.21280 1.00833 0.95722 0.95114 1.19653 0.94104 0.90620 0.97950 1.21739 0.90799 0.99812 0.87285 1.45730 1.13233 1.48981 1.27861 1.17205 0.81403 0.80197 0.83734 1.90837 1.69709 1.37339 1.47152 1.20331 0.97075 1.05078 0.95170 1.21436 0.93905 1.01648 0.97526 1.20898 1.00014 1.03580 0.99663 1.21364 0.89598 1.02991 0.94789 1.24923 1.03849 0.99383 0.88979 1.86487 1.45757 1.36100 1.67377 0.84784 0.73301 0.80898 0.77828 1.17614 1.19481 1.18317 1.41859 1.14911 1.35523 1.18277 1.19825 0.97792 0.94587 0.95487 1.21471 1.00003 0.93878 0.99060 1.21445 0.98621 0.95097 0.98906 1.21411 0.97790 1.00653 0.95207 1.21333 1.00020 0.94199 0.99285 1.21111 0.99343 0.94792 0.98982 1.21440 1.01239 0.95758 0.95587 1.26479 1.06033 1.02421 1.15172 0.91432 0.91193 0.90537 0.91307 0.92155 0.91353 0.89841 0.90934 0.92002 0.89779 0.92516 0.89846 0.75950 0.83840 0.82524 0.84898 0.75784 0.73321 0.83514 0.84471 0.85252 0.85811 0.86629 0.90702 0.89365 0.91227 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.10 8.65 113.37 0.98 3.08 16 2 Si 1.04 -5.61 10.51 68.60 0.72 -4.89 16 3 C -0.47 0.36 8.65 113.37 0.98 1.34 16 4 C -0.42 1.41 4.73 72.31 0.34 1.75 16 5 C -0.09 0.32 4.65 30.76 0.14 0.46 16 6 C -0.02 0.08 0.37 -53.24 -0.02 0.06 16 7 C 0.13 0.09 2.52 86.38 0.22 0.31 16 8 N -0.71 -0.58 4.71 -467.09 -2.20 -2.79 16 9 C 0.59 4.42 7.79 86.45 0.67 5.09 16 10 O -0.57 -8.94 16.88 -4.32 -0.07 -9.02 16 11 C -0.06 -0.31 7.06 40.35 0.28 -0.03 16 12 C -0.12 -0.72 10.65 22.57 0.24 -0.48 16 13 C -0.22 -0.39 9.32 22.01 0.21 -0.18 16 14 C 0.03 -0.03 6.47 41.34 0.27 0.23 16 15 C -0.06 0.30 3.08 71.24 0.22 0.52 16 16 O -0.55 2.42 12.88 -148.98 -1.92 0.50 16 17 Si 1.01 -4.14 25.82 68.60 1.77 -2.36 16 18 H -0.25 0.82 7.11 99.48 0.71 1.53 16 19 H -0.27 0.31 7.11 99.48 0.71 1.02 16 20 H -0.26 0.53 7.11 99.48 0.71 1.23 16 21 N -0.51 0.54 5.99 -171.93 -1.03 -0.49 16 22 C -0.08 0.16 3.85 -19.86 -0.08 0.09 16 23 C -0.13 0.48 8.88 22.27 0.20 0.68 16 24 C -0.12 0.34 10.05 22.27 0.22 0.56 16 25 C -0.13 0.10 10.05 22.27 0.22 0.32 16 26 C -0.13 -0.11 10.05 22.27 0.22 0.12 16 27 C -0.12 -0.10 8.46 22.27 0.19 0.09 16 28 C -0.10 0.66 3.03 30.68 0.09 0.75 16 29 C -0.42 2.07 4.71 72.22 0.34 2.41 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.08 -0.43 7.96 -2.38 -0.02 -0.45 16 33 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 34 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 35 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 36 H 0.08 -0.33 7.99 -2.39 -0.02 -0.34 16 37 H 0.07 -0.08 6.32 -2.39 -0.02 -0.10 16 38 H 0.06 -0.10 7.15 -2.38 -0.02 -0.12 16 39 H 0.08 -0.46 7.69 -2.39 -0.02 -0.48 16 40 H 0.06 0.23 7.15 -2.39 -0.02 0.21 16 41 H 0.08 0.11 4.04 -2.39 -0.01 0.10 16 42 H 0.40 -1.44 6.17 -92.71 -0.57 -2.01 16 43 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 -0.22 6.17 -2.91 -0.02 -0.24 16 45 H 0.13 -0.97 7.96 -2.39 -0.02 -0.99 16 46 H 0.39 -3.83 8.70 -74.06 -0.64 -4.47 16 47 H 0.43 -2.48 8.19 -92.71 -0.76 -3.24 16 48 H 0.15 -1.16 5.91 -2.91 -0.02 -1.18 16 49 H 0.14 -0.85 8.06 -2.91 -0.02 -0.87 16 50 H 0.13 -0.42 8.06 -2.91 -0.02 -0.45 16 51 H 0.12 -0.09 8.06 -2.91 -0.02 -0.12 16 52 H 0.12 0.13 7.02 -2.91 -0.02 0.11 16 53 H 0.07 -0.59 5.83 -2.38 -0.01 -0.61 16 54 H 0.09 -0.76 7.65 -2.39 -0.02 -0.78 16 55 H 0.07 -0.13 5.99 -2.39 -0.01 -0.15 16 56 H 0.09 -0.53 7.99 -2.38 -0.02 -0.55 16 Total: 0.00 -17.47 429.06 2.92 -14.55 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: -0.30 Total: -12.69 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 5.95 Total: 17.18 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -3.23 Total: -3.27 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.99 Total: -8.52 kcal Atomic # 14 Polarization: -9.75 SS G_CDS: 2.49 Total: -7.26 kcal Total: -17.47 2.92 -14.55 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16806646_6580494.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.953 kcal (2) G-P(sol) polarization free energy of solvation -17.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds