Wall clock time and date at job start Sun Mar 7 2021 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86297 * 109.93479 * 2 1 4 4 C 1.87376 * 109.94641 * 121.17393 * 2 1 3 5 5 C 1.53713 * 107.28406 * 164.90081 * 4 2 1 6 6 C 1.52521 * 109.64532 * 300.87911 * 5 4 2 7 7 N 1.46499 * 109.04629 * 197.55066 * 6 5 4 8 8 C 1.34775 * 119.99988 * 154.99541 * 7 6 5 9 9 O 1.21692 * 120.00210 * 0.02562 * 8 7 6 10 10 C 1.46679 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.37871 * 126.23359 * 179.97438 * 10 8 7 12 12 C 1.39840 * 107.08457 * 179.76519 * 11 10 8 13 13 C 1.50703 * 126.06417 * 180.26509 * 12 11 10 14 14 O 1.42895 * 109.47303 * 65.00359 * 13 12 11 15 15 Si 1.86303 * 109.46847 * 184.99938 * 13 12 11 16 16 H 1.48501 * 109.47186 * 59.99880 * 15 13 12 17 17 H 1.48498 * 109.47128 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47180 * 299.99917 * 15 13 12 19 19 C 1.35450 * 107.86634 * 0.24155 * 12 11 10 20 20 N 1.35531 * 108.87279 * 0.02562 * 19 12 11 21 21 C 1.52521 * 111.65797 * 76.98245 * 6 5 4 22 22 C 1.53708 * 109.64661 * 283.01653 * 21 6 5 23 23 H 1.09003 * 109.46913 * 298.82625 * 1 2 3 24 24 H 1.09009 * 109.47131 * 58.82220 * 1 2 3 25 25 H 1.08993 * 109.47130 * 178.82631 * 1 2 3 26 26 H 1.09003 * 109.47540 * 181.17452 * 3 2 1 27 27 H 1.09007 * 109.47110 * 301.17399 * 3 2 1 28 28 H 1.09005 * 109.47228 * 61.17081 * 3 2 1 29 29 H 1.09000 * 109.89395 * 45.46216 * 4 2 1 30 30 H 1.08996 * 109.95737 * 284.38334 * 4 2 1 31 31 H 1.09005 * 109.44485 * 180.82273 * 5 4 2 32 32 H 1.09000 * 109.43949 * 60.92789 * 5 4 2 33 33 H 1.09005 * 109.03953 * 316.50223 * 6 5 4 34 34 H 0.96999 * 119.99627 * 334.99841 * 7 6 5 35 35 H 1.08002 * 126.45965 * 0.03548 * 11 10 8 36 36 H 1.08998 * 109.47313 * 304.99502 * 13 12 11 37 37 H 0.96698 * 114.00229 * 59.99182 * 14 13 12 38 38 H 1.07998 * 125.56795 * 179.97438 * 19 12 11 39 39 H 0.97000 * 125.68486 * 179.97438 * 20 19 12 40 40 H 1.09008 * 109.44198 * 43.06823 * 21 6 5 41 41 H 1.08999 * 109.44101 * 162.95544 * 21 6 5 42 42 H 1.09004 * 109.89248 * 299.67650 * 22 21 6 43 43 H 1.09001 * 109.89226 * 178.56889 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4982 1.7513 0.0000 4 6 2.5022 -0.9117 1.5070 5 6 3.9900 -1.2109 1.2628 6 6 4.1431 -2.0547 0.0016 7 7 5.4684 -2.6790 0.0020 8 6 5.6760 -3.8202 -0.6844 9 8 4.7626 -4.3317 -1.3049 10 6 7.0030 -4.4450 -0.6843 11 6 7.3571 -5.6062 -1.3379 12 6 8.7117 -5.8302 -1.0727 13 6 9.5371 -6.9827 -1.5842 14 8 9.6440 -6.8977 -3.0066 15 14 11.2384 -6.9117 -0.8283 16 1 11.1273 -6.9999 0.6500 17 1 12.0515 -8.0477 -1.3317 18 1 11.8922 -5.6312 -1.2000 19 6 9.1504 -4.8272 -0.2750 20 7 8.1209 -3.9810 -0.0285 21 6 3.9900 -1.2128 -1.2610 22 6 2.5022 -0.9141 -1.5056 23 1 -0.3633 0.4955 0.9004 24 1 -0.3634 0.5321 -0.8793 25 1 -0.3633 -1.0274 -0.0210 26 1 3.5879 1.7427 -0.0211 27 1 2.1219 2.2743 -0.8793 28 1 2.1562 2.2619 0.9003 29 1 1.9530 -1.8442 1.6370 30 1 2.3899 -0.2886 2.3942 31 1 4.3953 -1.7559 2.1154 32 1 4.5331 -0.2737 1.1405 33 1 3.3824 -2.8354 0.0015 34 1 6.1965 -2.2711 0.4964 35 1 6.7112 -6.2238 -1.9444 36 1 9.0573 -7.9226 -1.3113 37 1 10.0626 -6.0850 -3.3217 38 1 10.1561 -4.7198 0.1035 39 1 8.1652 -3.1795 0.5161 40 1 4.5332 -0.2754 -1.1401 41 1 4.3953 -1.7591 -2.1127 42 1 1.9529 -1.8468 -1.6342 43 1 2.3900 -0.2912 -2.3931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:30:35 Heat of formation + Delta-G solvation = -77.365995 kcal Electronic energy + Delta-G solvation = -21854.176178 eV Core-core repulsion = 18636.760033 eV Total energy + Delta-G solvation = -3217.416145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47669 -40.48166 -37.82750 -37.59333 -34.11925 -32.45976 -32.13576 -30.69908 -29.32974 -28.50858 -27.20158 -26.10507 -23.81618 -23.53428 -21.61460 -21.13531 -20.70904 -19.88139 -17.70059 -17.22215 -16.95254 -16.44084 -16.12557 -15.87077 -15.69549 -15.20240 -14.83596 -14.81331 -14.57101 -14.09815 -14.07501 -14.00428 -13.86331 -13.51531 -13.47946 -13.38994 -13.31416 -13.17603 -13.02970 -12.61049 -12.38222 -12.23382 -12.13433 -11.85861 -11.77286 -11.11099 -10.87980 -10.56485 -10.35897 -10.32466 -10.07630 -9.93698 -9.29755 0.43293 1.20654 1.42451 1.47968 1.58979 1.67114 1.78850 1.82134 1.92640 1.97512 2.09176 2.42211 2.54571 3.61123 3.64253 3.79225 3.86044 3.98344 4.04912 4.10924 4.28944 4.37206 4.41171 4.54379 4.66162 4.66984 4.69858 4.71762 4.72968 4.75037 4.82307 4.92543 5.00434 5.07348 5.13826 5.22631 5.26152 5.37512 5.41076 5.49832 5.52183 5.61778 5.81842 6.20963 6.46044 6.70144 7.18061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.991 3.009 3 C -0.445 4.445 4 C -0.403 4.403 5 C -0.116 4.116 6 C 0.137 3.863 7 N -0.731 5.731 8 C 0.590 3.410 9 O -0.522 6.522 10 C -0.058 4.058 11 C -0.073 4.073 12 C -0.210 4.210 13 C -0.046 4.046 14 O -0.540 6.540 15 Si 0.947 3.053 16 H -0.252 1.252 17 H -0.252 1.252 18 H -0.254 1.254 19 C 0.026 3.974 20 N -0.535 5.535 21 C -0.117 4.117 22 C -0.403 4.403 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.392 0.608 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.374 0.626 38 H 0.170 0.830 39 H 0.418 0.582 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 4.493 3.800 6.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.187 2.813 3 C -0.553 4.553 4 C -0.489 4.489 5 C -0.154 4.154 6 C 0.034 3.966 7 N -0.381 5.381 8 C 0.377 3.623 9 O -0.397 6.397 10 C -0.170 4.170 11 C -0.100 4.100 12 C -0.217 4.217 13 C -0.158 4.158 14 O -0.345 6.345 15 Si 0.770 3.230 16 H -0.176 1.176 17 H -0.176 1.176 18 H -0.178 1.178 19 C -0.110 4.110 20 N -0.131 5.131 21 C -0.155 4.155 22 C -0.490 4.490 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.225 0.775 35 H 0.170 0.830 36 H 0.133 0.867 37 H 0.221 0.779 38 H 0.187 0.813 39 H 0.255 0.745 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.415 3.709 3.840 5.860 hybrid contribution 0.314 1.154 0.396 1.259 sum 2.729 4.863 4.236 7.003 Atomic orbital electron populations 1.26071 1.20428 1.04600 1.04451 0.79659 0.67154 0.67277 0.67178 1.26091 1.06195 1.18530 1.04488 1.26211 0.99293 1.08612 1.14781 1.21459 0.97620 0.99775 0.96499 1.21089 0.84435 0.96043 0.95069 1.46041 1.13483 1.25814 1.52790 1.17044 0.86162 0.80004 0.79081 1.90879 1.42662 1.63235 1.42900 1.20483 0.87739 1.00920 1.07880 1.21224 0.94676 0.94831 0.99249 1.19895 0.95893 0.99922 1.05987 1.24297 1.07699 0.98384 0.85387 1.86519 1.84003 1.44743 1.19222 0.85783 0.75947 0.81395 0.79873 1.17569 1.17582 1.17752 1.21856 0.93343 0.92822 1.03023 1.41912 1.08679 1.22655 1.39873 1.21561 0.96886 0.99543 0.97524 1.26241 0.99843 1.08456 1.14422 0.91238 0.91167 0.91094 0.91327 0.91169 0.91230 0.90190 0.90098 0.91244 0.91183 0.88900 0.77453 0.83033 0.86741 0.77902 0.81273 0.74493 0.91783 0.91297 0.90205 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.64 8.65 101.05 0.87 1.52 16 2 Si 0.99 -2.77 11.60 -169.99 -1.97 -4.74 16 3 C -0.45 0.92 8.65 101.05 0.87 1.79 16 4 C -0.40 0.94 4.98 37.53 0.19 1.13 16 5 C -0.12 0.27 5.05 -26.61 -0.13 0.13 16 6 C 0.14 -0.05 2.03 -68.42 -0.14 -0.19 16 7 N -0.73 0.46 5.04 -55.59 -0.28 0.18 16 8 C 0.59 1.58 7.54 -12.85 -0.10 1.48 16 9 O -0.52 -3.50 16.55 5.20 0.09 -3.41 16 10 C -0.06 -0.08 7.06 -81.98 -0.58 -0.66 16 11 C -0.07 -0.18 10.59 -39.12 -0.41 -0.60 16 12 C -0.21 -0.10 5.43 -105.02 -0.57 -0.67 16 13 C -0.05 0.01 3.02 36.01 0.11 0.12 16 14 O -0.54 -0.54 12.88 -35.23 -0.45 -0.99 16 15 Si 0.95 -1.21 25.89 -169.99 -4.40 -5.61 16 16 H -0.25 0.22 7.11 56.52 0.40 0.62 16 17 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 18 H -0.25 0.39 7.11 56.52 0.40 0.79 16 19 C 0.03 -0.04 10.45 -16.91 -0.18 -0.21 16 20 N -0.54 1.03 5.99 -9.39 -0.06 0.97 16 21 C -0.12 0.01 5.18 -26.61 -0.14 -0.12 16 22 C -0.40 0.32 4.98 37.53 0.19 0.51 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.09 7.96 -51.92 -0.41 -0.50 16 25 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 -0.15 7.99 -51.93 -0.41 -0.56 16 30 H 0.08 -0.22 7.99 -51.93 -0.41 -0.64 16 31 H 0.07 -0.16 8.13 -51.93 -0.42 -0.59 16 32 H 0.07 -0.24 7.69 -51.93 -0.40 -0.64 16 33 H 0.09 0.15 7.34 -51.93 -0.38 -0.23 16 34 H 0.39 -1.47 7.71 -40.82 -0.31 -1.79 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.11 -0.05 7.96 -51.93 -0.41 -0.47 16 37 H 0.37 -0.87 8.70 45.56 0.40 -0.47 16 38 H 0.17 -0.67 6.21 -52.49 -0.33 -0.99 16 39 H 0.42 -2.22 8.19 -40.82 -0.33 -2.56 16 40 H 0.06 -0.10 7.69 -51.92 -0.40 -0.50 16 41 H 0.07 0.16 7.92 -51.93 -0.41 -0.25 16 42 H 0.08 0.01 7.99 -51.93 -0.41 -0.41 16 43 H 0.08 -0.07 7.99 -51.93 -0.41 -0.49 16 LS Contribution 348.22 15.07 5.25 5.25 Total: 0.00 -7.94 348.22 -8.21 -16.15 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: -6.36 Total: -12.01 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.02 Total: 4.23 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -0.34 Total: 1.15 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.37 Total: -4.40 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: -6.37 Total: -10.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -7.94 -8.21 -16.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.216 kcal (2) G-P(sol) polarization free energy of solvation -7.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds