Wall clock time and date at job start Sun Mar 7 2021 13:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86297 * 109.93479 * 2 1 4 4 C 1.87376 * 109.94641 * 121.17393 * 2 1 3 5 5 C 1.53713 * 107.28406 * 164.90081 * 4 2 1 6 6 C 1.52521 * 109.64532 * 300.87911 * 5 4 2 7 7 N 1.46499 * 109.04629 * 197.55066 * 6 5 4 8 8 C 1.34775 * 119.99988 * 154.99541 * 7 6 5 9 9 O 1.21692 * 120.00210 * 0.02562 * 8 7 6 10 10 C 1.46679 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.37871 * 126.23359 * 179.97438 * 10 8 7 12 12 C 1.39840 * 107.08457 * 179.76519 * 11 10 8 13 13 C 1.50703 * 126.06417 * 180.26509 * 12 11 10 14 14 O 1.42895 * 109.47303 * 65.00359 * 13 12 11 15 15 Si 1.86303 * 109.46847 * 184.99938 * 13 12 11 16 16 H 1.48501 * 109.47186 * 59.99880 * 15 13 12 17 17 H 1.48498 * 109.47128 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47180 * 299.99917 * 15 13 12 19 19 C 1.35450 * 107.86634 * 0.24155 * 12 11 10 20 20 N 1.35531 * 108.87279 * 0.02562 * 19 12 11 21 21 C 1.52521 * 111.65797 * 76.98245 * 6 5 4 22 22 C 1.53708 * 109.64661 * 283.01653 * 21 6 5 23 23 H 1.09003 * 109.46913 * 298.82625 * 1 2 3 24 24 H 1.09009 * 109.47131 * 58.82220 * 1 2 3 25 25 H 1.08993 * 109.47130 * 178.82631 * 1 2 3 26 26 H 1.09003 * 109.47540 * 181.17452 * 3 2 1 27 27 H 1.09007 * 109.47110 * 301.17399 * 3 2 1 28 28 H 1.09005 * 109.47228 * 61.17081 * 3 2 1 29 29 H 1.09000 * 109.89395 * 45.46216 * 4 2 1 30 30 H 1.08996 * 109.95737 * 284.38334 * 4 2 1 31 31 H 1.09005 * 109.44485 * 180.82273 * 5 4 2 32 32 H 1.09000 * 109.43949 * 60.92789 * 5 4 2 33 33 H 1.09005 * 109.03953 * 316.50223 * 6 5 4 34 34 H 0.96999 * 119.99627 * 334.99841 * 7 6 5 35 35 H 1.08002 * 126.45965 * 0.03548 * 11 10 8 36 36 H 1.08998 * 109.47313 * 304.99502 * 13 12 11 37 37 H 0.96698 * 114.00229 * 59.99182 * 14 13 12 38 38 H 1.07998 * 125.56795 * 179.97438 * 19 12 11 39 39 H 0.97000 * 125.68486 * 179.97438 * 20 19 12 40 40 H 1.09008 * 109.44198 * 43.06823 * 21 6 5 41 41 H 1.08999 * 109.44101 * 162.95544 * 21 6 5 42 42 H 1.09004 * 109.89248 * 299.67650 * 22 21 6 43 43 H 1.09001 * 109.89226 * 178.56889 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4982 1.7513 0.0000 4 6 2.5022 -0.9117 1.5070 5 6 3.9900 -1.2109 1.2628 6 6 4.1431 -2.0547 0.0016 7 7 5.4684 -2.6790 0.0020 8 6 5.6760 -3.8202 -0.6844 9 8 4.7626 -4.3317 -1.3049 10 6 7.0030 -4.4450 -0.6843 11 6 7.3571 -5.6062 -1.3379 12 6 8.7117 -5.8302 -1.0727 13 6 9.5371 -6.9827 -1.5842 14 8 9.6440 -6.8977 -3.0066 15 14 11.2384 -6.9117 -0.8283 16 1 11.1273 -6.9999 0.6500 17 1 12.0515 -8.0477 -1.3317 18 1 11.8922 -5.6312 -1.2000 19 6 9.1504 -4.8272 -0.2750 20 7 8.1209 -3.9810 -0.0285 21 6 3.9900 -1.2128 -1.2610 22 6 2.5022 -0.9141 -1.5056 23 1 -0.3633 0.4955 0.9004 24 1 -0.3634 0.5321 -0.8793 25 1 -0.3633 -1.0274 -0.0210 26 1 3.5879 1.7427 -0.0211 27 1 2.1219 2.2743 -0.8793 28 1 2.1562 2.2619 0.9003 29 1 1.9530 -1.8442 1.6370 30 1 2.3899 -0.2886 2.3942 31 1 4.3953 -1.7559 2.1154 32 1 4.5331 -0.2737 1.1405 33 1 3.3824 -2.8354 0.0015 34 1 6.1965 -2.2711 0.4964 35 1 6.7112 -6.2238 -1.9444 36 1 9.0573 -7.9226 -1.3113 37 1 10.0626 -6.0850 -3.3217 38 1 10.1561 -4.7198 0.1035 39 1 8.1652 -3.1795 0.5161 40 1 4.5332 -0.2754 -1.1401 41 1 4.3953 -1.7591 -2.1127 42 1 1.9529 -1.8468 -1.6342 43 1 2.3900 -0.2912 -2.3931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:30:34 Heat of formation + Delta-G solvation = -75.713706 kcal Electronic energy + Delta-G solvation = -21854.104529 eV Core-core repulsion = 18636.760033 eV Total energy + Delta-G solvation = -3217.344497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.50214 -40.60333 -37.90470 -37.62333 -34.20117 -32.46767 -32.03244 -30.74545 -29.18399 -28.33781 -27.19739 -26.06371 -23.88301 -23.43456 -21.62450 -21.19913 -20.71751 -19.88307 -17.70563 -17.34117 -16.92588 -16.49791 -16.07388 -15.91613 -15.70267 -15.13893 -14.92766 -14.78829 -14.55958 -14.11408 -13.99967 -13.90988 -13.74786 -13.51955 -13.39170 -13.30469 -13.15871 -13.06724 -12.96227 -12.53560 -12.33926 -12.16424 -12.04245 -11.78023 -11.72435 -11.33659 -10.73332 -10.44347 -10.38762 -10.30512 -10.07091 -9.95526 -9.31525 0.34134 1.28886 1.48572 1.56712 1.65046 1.83862 1.89329 1.98765 2.03635 2.05501 2.14528 2.25429 2.68269 3.67988 3.72456 3.81715 3.96951 4.03658 4.09917 4.18377 4.36201 4.37258 4.51607 4.60882 4.75524 4.79034 4.81334 4.82956 4.84185 4.87934 4.90070 4.90717 5.00809 5.14263 5.20900 5.24603 5.32284 5.46838 5.48191 5.57073 5.60489 5.69101 5.72683 6.34275 6.50934 6.85126 7.06809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.062 2.938 3 C -0.452 4.452 4 C -0.411 4.411 5 C -0.112 4.112 6 C 0.136 3.864 7 N -0.713 5.713 8 C 0.586 3.414 9 O -0.575 6.575 10 C -0.069 4.069 11 C -0.102 4.102 12 C -0.224 4.224 13 C -0.059 4.059 14 O -0.563 6.563 15 Si 0.997 3.003 16 H -0.250 1.250 17 H -0.283 1.283 18 H -0.239 1.239 19 C 0.047 3.953 20 N -0.515 5.515 21 C -0.116 4.116 22 C -0.424 4.424 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.387 0.613 38 H 0.205 0.795 39 H 0.437 0.563 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 6.605 5.791 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.253 2.747 3 C -0.560 4.560 4 C -0.497 4.497 5 C -0.150 4.150 6 C 0.032 3.968 7 N -0.364 5.364 8 C 0.374 3.626 9 O -0.454 6.454 10 C -0.182 4.182 11 C -0.129 4.129 12 C -0.231 4.231 13 C -0.169 4.169 14 O -0.370 6.370 15 Si 0.819 3.181 16 H -0.174 1.174 17 H -0.209 1.209 18 H -0.162 1.162 19 C -0.092 4.092 20 N -0.113 5.113 21 C -0.154 4.154 22 C -0.508 4.508 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.236 0.764 38 H 0.222 0.778 39 H 0.278 0.722 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.200 5.881 5.848 9.296 hybrid contribution -0.271 0.445 -0.285 0.594 sum 3.928 6.326 5.562 9.294 Atomic orbital electron populations 1.26309 1.22306 1.04177 1.04518 0.78605 0.65066 0.66142 0.64849 1.26159 1.06764 1.18462 1.04641 1.26297 0.99228 1.08579 1.15575 1.21469 0.98018 1.00346 0.95132 1.21131 0.83771 0.95614 0.96289 1.45898 1.14140 1.24666 1.51681 1.17286 0.86120 0.80475 0.78675 1.90846 1.44366 1.64874 1.45340 1.20192 0.88138 1.00990 1.08915 1.21242 0.95866 0.95651 1.00183 1.20008 0.95012 1.01056 1.06993 1.24591 1.09324 0.97969 0.84974 1.86477 1.84449 1.45838 1.20212 0.85079 0.73260 0.80644 0.79087 1.17371 1.20891 1.16190 1.22316 0.94337 0.91386 1.01119 1.41835 1.07383 1.23028 1.39007 1.21557 0.97407 1.00020 0.96411 1.26567 0.99551 1.08151 1.16517 0.90806 0.91474 0.91792 0.90589 0.91471 0.90687 0.90964 0.88695 0.90613 0.88884 0.91534 0.75276 0.85509 0.87570 0.76445 0.77819 0.72216 0.89590 0.94516 0.92060 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.13 8.65 113.37 0.98 2.11 16 2 Si 1.06 -6.21 11.60 68.60 0.80 -5.42 16 3 C -0.45 2.60 8.65 113.37 0.98 3.58 16 4 C -0.41 2.30 4.98 72.22 0.36 2.66 16 5 C -0.11 0.66 5.05 30.68 0.15 0.82 16 6 C 0.14 0.01 2.03 44.67 0.09 0.10 16 7 N -0.71 0.56 5.04 -448.02 -2.26 -1.70 16 8 C 0.59 4.34 7.54 86.45 0.65 4.99 16 9 O -0.57 -9.95 16.55 -4.32 -0.07 -10.02 16 10 C -0.07 -0.28 7.06 40.35 0.28 0.01 16 11 C -0.10 -0.75 10.59 22.57 0.24 -0.51 16 12 C -0.22 -0.32 5.43 -20.12 -0.11 -0.43 16 13 C -0.06 -0.02 3.02 71.24 0.22 0.19 16 14 O -0.56 -1.85 12.88 -148.98 -1.92 -3.77 16 15 Si 1.00 -3.65 25.89 68.60 1.78 -1.88 16 16 H -0.25 0.99 7.11 99.48 0.71 1.70 16 17 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 18 H -0.24 1.44 7.11 99.48 0.71 2.15 16 19 C 0.05 -0.21 10.45 83.48 0.87 0.66 16 20 N -0.52 2.62 5.99 -183.62 -1.10 1.52 16 21 C -0.12 -0.11 5.18 30.67 0.16 0.05 16 22 C -0.42 0.00 4.98 72.22 0.36 0.36 16 23 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 24 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 25 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 26 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 27 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 28 H 0.07 -0.47 7.96 -2.38 -0.02 -0.48 16 29 H 0.07 -0.26 7.99 -2.39 -0.02 -0.28 16 30 H 0.09 -0.73 7.99 -2.39 -0.02 -0.75 16 31 H 0.08 -0.50 8.13 -2.38 -0.02 -0.52 16 32 H 0.09 -0.93 7.69 -2.39 -0.02 -0.95 16 33 H 0.07 0.38 7.34 -2.38 -0.02 0.36 16 34 H 0.41 -3.57 7.71 -92.71 -0.72 -4.29 16 35 H 0.13 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.11 0.11 7.96 -2.39 -0.02 0.09 16 37 H 0.39 -1.52 8.70 -74.06 -0.64 -2.16 16 38 H 0.21 -2.38 6.21 -2.91 -0.02 -2.39 16 39 H 0.44 -5.71 8.19 -92.71 -0.76 -6.46 16 40 H 0.09 -0.33 7.69 -2.38 -0.02 -0.34 16 41 H 0.04 0.27 7.92 -2.39 -0.02 0.25 16 42 H 0.06 0.21 7.99 -2.39 -0.02 0.19 16 43 H 0.08 -0.02 7.99 -2.39 -0.02 -0.04 16 Total: 0.00 -22.38 348.22 2.12 -20.26 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.34 Total: -13.60 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.24 Total: 14.60 kcal Atomic # 7 Polarization: 3.18 SS G_CDS: -3.36 Total: -0.18 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.99 Total: -13.79 kcal Atomic # 14 Polarization: -9.86 SS G_CDS: 2.57 Total: -7.29 kcal Total: -22.38 2.12 -20.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.452 kcal (2) G-P(sol) polarization free energy of solvation -22.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds