Wall clock time and date at job start Sun Mar 7 2021 13:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35540 * 125.67458 * 2 1 4 4 C 1.35454 * 108.87148 * 179.97438 * 3 2 1 5 5 C 1.50692 * 126.06946 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.47335 * 120.02214 * 5 4 3 7 7 Si 1.86308 * 109.47204 * 0.02562 * 5 4 3 8 8 H 1.48502 * 109.46878 * 59.99716 * 7 5 4 9 9 H 1.48497 * 109.47124 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46887 * 300.00230 * 7 5 4 11 11 C 1.39838 * 107.86478 * 0.02562 * 4 3 2 12 12 C 1.37647 * 125.68212 * 179.69807 * 2 1 3 13 13 C 1.46683 * 126.22945 * 0.02562 * 12 2 1 14 14 O 1.21693 * 120.00242 * 5.56297 * 13 12 2 15 15 N 1.34774 * 119.99528 * 185.56622 * 13 12 2 16 16 C 1.46504 * 119.99448 * 185.06962 * 15 13 12 17 17 C 1.52524 * 109.04291 * 277.14528 * 16 15 13 18 18 C 1.53716 * 109.64030 * 162.45038 * 17 16 15 19 19 Si 1.87387 * 107.28096 * 59.12827 * 18 17 16 20 20 C 1.86305 * 109.94416 * 195.09359 * 19 18 17 21 21 C 1.86297 * 109.94639 * 73.84509 * 19 18 17 22 22 C 1.87372 * 107.00702 * 314.46748 * 19 18 17 23 23 C 1.52531 * 109.04190 * 154.99960 * 16 15 13 24 24 H 1.09003 * 109.47392 * 86.10561 * 1 2 3 25 25 H 1.09004 * 109.47369 * 326.10489 * 1 2 3 26 26 H 1.09002 * 109.46584 * 206.10454 * 1 2 3 27 27 H 1.07994 * 125.56357 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47711 * 240.02428 * 5 4 3 29 29 H 0.96693 * 114.00072 * 180.02562 * 6 5 4 30 30 H 1.08003 * 126.45897 * 180.02562 * 11 4 3 31 31 H 0.96998 * 120.00473 * 5.06684 * 15 13 12 32 32 H 1.09001 * 109.03593 * 36.04027 * 16 15 13 33 33 H 1.08992 * 109.44376 * 282.50505 * 17 16 15 34 34 H 1.09000 * 109.44175 * 42.40151 * 17 16 15 35 35 H 1.09001 * 109.89409 * 299.68445 * 18 17 16 36 36 H 1.08997 * 109.89262 * 178.57312 * 18 17 16 37 37 H 1.08994 * 109.46954 * 177.56161 * 20 19 18 38 38 H 1.09001 * 109.46993 * 297.56626 * 20 19 18 39 39 H 1.09002 * 109.46809 * 57.56233 * 20 19 18 40 40 H 1.09004 * 109.47058 * 302.43547 * 21 19 18 41 41 H 1.09000 * 109.47192 * 62.43229 * 21 19 18 42 42 H 1.09000 * 109.47194 * 182.43748 * 21 19 18 43 43 H 1.09004 * 109.89676 * 286.08657 * 22 19 18 44 44 H 1.09003 * 109.95446 * 165.00862 * 22 19 18 45 45 H 1.09005 * 109.43908 * 317.59865 * 23 16 15 46 46 H 1.08994 * 109.44455 * 77.49808 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7095 0.0006 5 6 4.7536 1.6190 0.0013 6 8 5.5398 1.3689 1.1682 7 14 4.1886 3.3944 0.0021 8 1 3.3710 3.6530 1.2146 9 1 5.3725 4.2907 0.0022 10 1 3.3716 3.6543 -1.2104 11 6 3.5781 -0.6887 0.0004 12 6 2.2679 -1.1180 0.0059 13 6 1.8125 -2.5124 0.0127 14 8 0.6265 -2.7656 -0.0886 15 7 2.7075 -3.5130 0.1313 16 6 2.2667 -4.9062 0.0267 17 6 1.7226 -5.3587 1.3779 18 6 0.8701 -6.6245 1.1938 19 14 1.9747 -7.9342 0.4351 20 6 0.9378 -9.3279 -0.2382 21 6 3.1617 -8.5841 1.7155 22 6 2.9226 -7.1126 -0.9567 23 6 3.4421 -5.7676 -0.4238 24 1 -0.3634 0.0698 -1.0253 25 1 -0.3634 0.8530 0.5731 26 1 -0.3632 -0.9229 0.4522 27 1 1.9081 2.1236 -0.0004 28 1 5.3537 1.4292 -0.8885 29 1 6.3311 1.9205 1.2350 30 1 4.4585 -1.3143 0.0011 31 1 3.6435 -3.3107 0.2858 32 1 1.4718 -4.9728 -0.7160 33 1 2.5533 -5.5752 2.0494 34 1 1.1081 -4.5664 1.8053 35 1 0.0329 -6.4143 0.5282 36 1 0.4998 -6.9660 2.1604 37 1 1.5845 -10.0640 -0.7157 38 1 0.3901 -9.8001 0.5774 39 1 0.2322 -8.9350 -0.9702 40 1 3.7486 -7.7589 2.1190 41 1 2.6025 -9.0601 2.5210 42 1 3.8286 -9.3135 1.2557 43 1 2.2616 -6.9442 -1.8070 44 1 3.7609 -7.7410 -1.2576 45 1 3.9888 -5.2513 -1.2130 46 1 4.1071 -5.9447 0.4214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:30:44 Heat of formation + Delta-G solvation = -65.921442 kcal Electronic energy + Delta-G solvation = -24020.870296 eV Core-core repulsion = 20648.412805 eV Total energy + Delta-G solvation = -3372.457491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57106 -40.55318 -37.90572 -37.53074 -34.51805 -33.65328 -32.00182 -30.93036 -29.15719 -28.39886 -28.32119 -26.71886 -25.55143 -23.64879 -23.35468 -21.58592 -21.02244 -20.35312 -18.67385 -18.24844 -17.29612 -17.08547 -16.71660 -16.11501 -15.87528 -15.51633 -15.28127 -14.95824 -14.91622 -14.66664 -14.35159 -13.98897 -13.89519 -13.71748 -13.61903 -13.36526 -13.29094 -13.28591 -13.18234 -13.14016 -13.03009 -12.88166 -12.49718 -12.43416 -12.13259 -12.06782 -11.82501 -11.74271 -11.14452 -10.71345 -10.41240 -10.32461 -10.21492 -10.02329 -9.66891 -9.27535 0.37762 1.25311 1.44304 1.52520 1.59538 1.63410 1.85938 1.99252 1.99601 2.04936 2.27690 2.32390 2.70394 3.61010 3.68123 3.80122 3.89553 3.98742 4.06258 4.14207 4.22125 4.30060 4.39765 4.41673 4.54581 4.61877 4.65858 4.68534 4.79673 4.81553 4.83261 4.85299 4.86639 4.89380 4.91673 5.16508 5.18268 5.25266 5.28124 5.38518 5.49068 5.51422 5.60979 5.66381 5.71599 5.87586 6.10533 6.47924 6.96470 7.12400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.414 5.414 3 C 0.016 3.984 4 C -0.181 4.181 5 C -0.044 4.044 6 O -0.565 6.565 7 Si 0.975 3.025 8 H -0.272 1.272 9 H -0.255 1.255 10 H -0.258 1.258 11 C -0.108 4.108 12 C -0.079 4.079 13 C 0.586 3.414 14 O -0.582 6.582 15 N -0.704 5.704 16 C 0.141 3.859 17 C -0.116 4.116 18 C -0.421 4.421 19 Si 1.060 2.940 20 C -0.464 4.464 21 C -0.454 4.454 22 C -0.409 4.409 23 C -0.114 4.114 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.186 0.814 28 H 0.090 0.910 29 H 0.395 0.605 30 H 0.164 0.836 31 H 0.415 0.585 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 0.289 -0.877 4.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.086 5.086 3 C -0.121 4.121 4 C -0.187 4.187 5 C -0.155 4.155 6 O -0.374 6.374 7 Si 0.799 3.201 8 H -0.197 1.197 9 H -0.179 1.179 10 H -0.182 1.182 11 C -0.134 4.134 12 C -0.192 4.192 13 C 0.375 3.625 14 O -0.464 6.464 15 N -0.355 5.355 16 C 0.037 3.963 17 C -0.154 4.154 18 C -0.505 4.505 19 Si 1.252 2.748 20 C -0.571 4.571 21 C -0.562 4.562 22 C -0.495 4.495 23 C -0.152 4.152 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.203 0.797 28 H 0.108 0.892 29 H 0.245 0.755 30 H 0.182 0.818 31 H 0.252 0.748 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.454 0.495 -0.861 2.648 hybrid contribution 0.399 0.285 0.039 0.492 sum 2.853 0.781 -0.822 3.070 Atomic orbital electron populations 1.22417 0.74948 1.05758 1.04709 1.43968 1.07598 1.04800 1.52256 1.22143 0.90300 0.92318 1.07347 1.19013 0.92908 0.94504 1.12263 1.24015 0.92694 1.07806 0.90946 1.86463 1.41433 1.66532 1.42924 0.85380 0.80557 0.74321 0.79826 1.19652 1.17889 1.18194 1.21439 0.94375 0.94945 1.02666 1.20179 0.91029 0.87614 1.20329 1.17174 0.85415 0.84200 0.75745 1.90767 1.17599 1.85295 1.52786 1.45748 1.11718 1.05472 1.72587 1.21120 0.98136 0.79344 0.97714 1.21553 0.99739 0.97482 0.96632 1.26541 1.07809 1.08661 1.07486 0.78631 0.65531 0.64595 0.66068 1.26277 1.09841 1.14367 1.06598 1.26182 1.11202 1.06692 1.12123 1.26296 1.09007 1.01920 1.12316 1.21482 0.96057 0.95335 1.02288 0.89674 0.87453 0.89448 0.79714 0.89245 0.75501 0.81842 0.74804 0.91302 0.89996 0.94443 0.91839 0.90566 0.90806 0.91455 0.91654 0.90774 0.91478 0.90711 0.90784 0.88763 0.90582 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 10.64 127.77 1.36 1.51 16 2 N -0.41 -2.51 3.16 -534.29 -1.69 -4.20 16 3 C 0.02 0.06 9.94 83.48 0.83 0.88 16 4 C -0.18 -0.67 5.47 -20.12 -0.11 -0.78 16 5 C -0.04 0.05 3.01 71.23 0.21 0.26 16 6 O -0.57 0.10 12.86 -148.98 -1.92 -1.81 16 7 Si 0.98 -1.97 25.87 68.60 1.77 -0.19 16 8 H -0.27 -0.44 7.11 99.48 0.71 0.27 16 9 H -0.26 0.55 7.11 99.48 0.71 1.25 16 10 H -0.26 0.28 7.11 99.48 0.71 0.98 16 11 C -0.11 -0.44 10.28 22.57 0.23 -0.21 16 12 C -0.08 -0.58 6.88 40.35 0.28 -0.30 16 13 C 0.59 5.20 7.53 86.45 0.65 5.85 16 14 O -0.58 -8.82 14.11 -4.33 -0.06 -8.88 16 15 N -0.70 -1.68 5.02 -447.99 -2.25 -3.93 16 16 C 0.14 0.22 2.01 44.68 0.09 0.31 16 17 C -0.12 -0.27 5.15 30.68 0.16 -0.11 16 18 C -0.42 -0.21 4.98 72.22 0.36 0.15 16 19 Si 1.06 -5.38 11.60 68.60 0.80 -4.58 16 20 C -0.46 1.05 8.65 113.37 0.98 2.03 16 21 C -0.45 2.01 8.65 113.37 0.98 2.99 16 22 C -0.41 1.88 4.98 72.22 0.36 2.24 16 23 C -0.11 0.45 5.05 30.68 0.15 0.61 16 24 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.11 -0.32 8.14 -2.38 -0.02 -0.34 16 26 H 0.09 0.59 6.21 -2.39 -0.01 0.58 16 27 H 0.19 -0.28 6.19 -2.91 -0.02 -0.30 16 28 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.40 -3.65 8.74 -74.06 -0.65 -4.30 16 30 H 0.16 -0.14 7.50 -2.91 -0.02 -0.16 16 31 H 0.41 -1.24 7.54 -92.71 -0.70 -1.94 16 32 H 0.07 0.41 7.42 -2.39 -0.02 0.39 16 33 H 0.08 -0.12 7.69 -2.39 -0.02 -0.13 16 34 H 0.04 0.32 7.69 -2.39 -0.02 0.30 16 35 H 0.06 0.20 7.99 -2.39 -0.02 0.18 16 36 H 0.08 0.02 7.99 -2.39 -0.02 0.00 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 39 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 40 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 41 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.07 -0.23 7.99 -2.38 -0.02 -0.25 16 44 H 0.09 -0.62 7.99 -2.39 -0.02 -0.64 16 45 H 0.08 -0.33 8.13 -2.38 -0.02 -0.35 16 46 H 0.09 -0.65 7.69 -2.39 -0.02 -0.67 16 Total: 0.00 -18.75 365.93 3.57 -15.18 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: 0.38 Total: -7.02 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.54 Total: 15.44 kcal Atomic # 7 Polarization: -4.19 SS G_CDS: -3.94 Total: -8.13 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.98 Total: -10.69 kcal Atomic # 14 Polarization: -7.35 SS G_CDS: 2.57 Total: -4.78 kcal Total: -18.75 3.57 -15.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.745 kcal (2) G-P(sol) polarization free energy of solvation -18.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds