Wall clock time and date at job start Sun Mar 7 2021 13:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86294 * 109.93674 * 2 1 4 4 C 1.87385 * 109.94457 * 121.17286 * 2 1 3 5 5 C 1.53713 * 107.28304 * 164.90147 * 4 2 1 6 6 C 1.52525 * 109.64332 * 300.87289 * 5 4 2 7 7 N 1.46498 * 109.04694 * 197.55263 * 6 5 4 8 8 C 1.34773 * 120.00315 * 154.99649 * 7 6 5 9 9 O 1.21717 * 119.99864 * 0.02562 * 8 7 6 10 10 C 1.46567 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.40856 * 126.57835 * 180.02562 * 10 8 7 12 12 C 1.40096 * 132.86455 * 0.29300 * 11 10 8 13 13 C 1.36449 * 119.24660 * 180.17564 * 12 11 10 14 14 C 1.50707 * 120.28904 * 179.80043 * 13 12 11 15 15 O 1.42903 * 109.46442 * 119.72560 * 14 13 12 16 16 Si 1.86293 * 109.47256 * 239.72127 * 14 13 12 17 17 H 1.48499 * 109.47512 * 300.00264 * 16 14 13 18 18 H 1.48505 * 109.47075 * 60.00390 * 16 14 13 19 19 H 1.48499 * 109.47038 * 180.02562 * 16 14 13 20 20 C 1.40154 * 119.41768 * 359.52956 * 13 12 11 21 21 C 1.35189 * 120.31166 * 0.25026 * 20 13 12 22 22 N 1.36240 * 120.71092 * 359.97438 * 21 20 13 23 23 N 1.40019 * 132.01214 * 179.97438 * 22 21 20 24 24 C 1.30739 * 109.60201 * 180.02562 * 23 22 21 25 25 C 1.52519 * 111.65405 * 76.98917 * 6 5 4 26 26 C 1.53719 * 109.64449 * 283.01297 * 25 6 5 27 27 H 1.09007 * 109.47085 * 298.83457 * 1 2 3 28 28 H 1.08997 * 109.46776 * 58.82601 * 1 2 3 29 29 H 1.08998 * 109.47815 * 178.82543 * 1 2 3 30 30 H 1.09000 * 109.47083 * 181.17538 * 3 2 1 31 31 H 1.08999 * 109.47154 * 301.17149 * 3 2 1 32 32 H 1.09003 * 109.47499 * 61.16816 * 3 2 1 33 33 H 1.09004 * 109.89539 * 45.45450 * 4 2 1 34 34 H 1.09002 * 109.95354 * 284.38333 * 4 2 1 35 35 H 1.08999 * 109.43940 * 180.82560 * 5 4 2 36 36 H 1.08996 * 109.44271 * 60.92959 * 5 4 2 37 37 H 1.09005 * 109.04152 * 316.50519 * 6 5 4 38 38 H 0.97003 * 119.99819 * 335.00045 * 7 6 5 39 39 H 1.07990 * 120.37495 * 359.97438 * 12 11 10 40 40 H 1.08999 * 109.47345 * 359.72631 * 14 13 12 41 41 H 0.96700 * 114.00311 * 60.00230 * 15 14 13 42 42 H 1.07993 * 119.84582 * 180.27024 * 20 13 12 43 43 H 1.08007 * 119.64160 * 179.97438 * 21 20 13 44 44 H 1.08000 * 125.62937 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.44373 * 43.06378 * 25 6 5 46 46 H 1.08999 * 109.44276 * 162.95792 * 25 6 5 47 47 H 1.09002 * 109.89073 * 299.67742 * 26 25 6 48 48 H 1.08997 * 109.89066 * 178.56805 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4982 1.7513 0.0000 4 6 2.5022 -0.9118 1.5071 5 6 3.9900 -1.2109 1.2629 6 6 4.1431 -2.0549 0.0017 7 7 5.4683 -2.6793 0.0022 8 6 5.6759 -3.8205 -0.6840 9 8 4.7623 -4.3321 -1.3046 10 6 7.0019 -4.4448 -0.6839 11 6 7.3718 -5.6299 -1.3494 12 6 6.6666 -6.5253 -2.1640 13 6 7.3128 -7.6137 -2.6736 14 6 6.5757 -8.5944 -3.5489 15 8 7.1985 -8.6472 -4.8340 16 14 6.6239 -10.2840 -2.7656 17 1 8.0355 -10.7194 -2.6141 18 1 5.9767 -10.2290 -1.4301 19 1 5.8981 -11.2504 -3.6284 20 6 8.6694 -7.8084 -2.3805 21 6 9.3311 -6.9287 -1.5958 22 7 8.6935 -5.8415 -1.0784 23 7 9.1363 -4.7996 -0.2544 24 6 8.1484 -3.9762 -0.0193 25 6 3.9901 -1.2130 -1.2608 26 6 2.5022 -0.9142 -1.5055 27 1 -0.3634 0.4957 0.9003 28 1 -0.3633 0.5320 -0.8793 29 1 -0.3634 -1.0274 -0.0211 30 1 3.5880 1.7425 -0.0211 31 1 2.1221 2.2742 -0.8793 32 1 2.1563 2.2619 0.9003 33 1 1.9528 -1.8442 1.6372 34 1 2.3898 -0.2885 2.3943 35 1 4.3952 -1.7559 2.1155 36 1 4.5332 -0.2738 1.1406 37 1 3.3823 -2.8356 0.0018 38 1 6.1965 -2.2714 0.4966 39 1 5.6226 -6.3578 -2.3834 40 1 5.5396 -8.2748 -3.6601 41 1 8.1245 -8.9250 -4.8112 42 1 9.1888 -8.6651 -2.7838 43 1 10.3764 -7.0895 -1.3765 44 1 8.2037 -3.0837 0.5863 45 1 4.5332 -0.2757 -1.1400 46 1 4.3953 -1.7594 -2.1125 47 1 1.9529 -1.8469 -1.6341 48 1 2.3901 -0.2914 -2.3930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:34:02 Heat of formation + Delta-G solvation = -16.466463 kcal Electronic energy + Delta-G solvation = -28148.410859 eV Core-core repulsion = 24327.993564 eV Total energy + Delta-G solvation = -3820.417295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.28448 -40.53581 -39.37021 -37.65099 -37.25000 -34.25207 -33.70735 -32.09518 -32.02130 -30.34851 -29.25393 -28.44658 -27.51534 -26.39093 -24.91630 -23.61144 -23.40165 -23.02786 -21.40397 -21.00896 -19.02015 -18.61672 -18.01511 -17.53276 -16.95925 -16.90347 -16.64388 -16.13234 -15.90296 -15.55077 -15.46601 -15.15408 -14.91591 -14.83492 -14.44113 -14.09252 -14.02188 -13.95987 -13.78435 -13.56598 -13.38207 -13.32404 -13.24889 -13.24570 -13.10351 -12.91006 -12.50974 -12.43760 -12.25023 -12.12614 -12.08814 -11.90189 -11.73006 -11.49187 -10.84274 -10.79326 -10.72461 -10.44586 -10.33814 -10.21883 -9.86900 -8.74914 -0.55569 -0.15263 0.98167 1.00637 1.12128 1.30792 1.45090 1.75097 1.81321 1.87084 1.89743 2.06375 2.34086 2.62408 2.65946 3.07292 3.17603 3.33947 3.46154 3.64532 3.78930 3.86036 4.00344 4.09823 4.15729 4.24049 4.26888 4.38901 4.40424 4.51781 4.52330 4.66805 4.72001 4.72724 4.76725 4.77174 4.78772 4.81961 4.94201 5.08173 5.12114 5.16984 5.23216 5.29045 5.36392 5.37251 5.46084 5.53535 5.57277 5.64548 5.71266 6.32246 6.35335 6.70281 7.47987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.989 3.011 3 C -0.445 4.445 4 C -0.402 4.402 5 C -0.116 4.116 6 C 0.140 3.860 7 N -0.727 5.727 8 C 0.601 3.399 9 O -0.548 6.548 10 C -0.315 4.315 11 C 0.168 3.832 12 C -0.090 4.090 13 C -0.072 4.072 14 C -0.082 4.082 15 O -0.530 6.530 16 Si 0.952 3.048 17 H -0.247 1.247 18 H -0.247 1.247 19 H -0.243 1.243 20 C -0.163 4.163 21 C 0.122 3.878 22 N -0.267 5.267 23 N -0.313 5.313 24 C 0.120 3.880 25 C -0.116 4.116 26 C -0.402 4.402 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.397 0.603 39 H 0.165 0.835 40 H 0.126 0.874 41 H 0.375 0.625 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.199 0.801 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -0.276 1.536 2.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.186 2.814 3 C -0.553 4.553 4 C -0.488 4.488 5 C -0.154 4.154 6 C 0.036 3.964 7 N -0.377 5.377 8 C 0.389 3.611 9 O -0.426 6.426 10 C -0.329 4.329 11 C 0.047 3.953 12 C -0.110 4.110 13 C -0.078 4.078 14 C -0.191 4.191 15 O -0.335 6.335 16 Si 0.771 3.229 17 H -0.170 1.170 18 H -0.171 1.171 19 H -0.166 1.166 20 C -0.185 4.185 21 C -0.004 4.004 22 N -0.031 5.031 23 N -0.134 5.134 24 C -0.061 4.061 25 C -0.155 4.155 26 C -0.489 4.489 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.182 0.818 40 H 0.144 0.856 41 H 0.223 0.777 42 H 0.178 0.822 43 H 0.195 0.805 44 H 0.215 0.785 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.016 -1.403 1.594 2.928 hybrid contribution 0.268 0.783 0.172 0.845 sum 2.284 -0.620 1.766 2.953 Atomic orbital electron populations 1.26074 1.20543 1.04530 1.04386 0.79679 0.67028 0.67331 0.67377 1.26087 1.06281 1.18519 1.04405 1.26202 0.99515 1.08483 1.14617 1.21460 0.97349 0.99874 0.96712 1.21009 0.84794 0.95840 0.94772 1.45846 1.13210 1.25707 1.52964 1.16817 0.86117 0.79773 0.78353 1.90781 1.44117 1.63801 1.43938 1.19677 0.96485 1.01350 1.15413 1.19304 0.84424 0.95404 0.96180 1.20726 1.02089 0.91771 0.96380 1.20489 0.94164 0.96030 0.97079 1.25096 0.99777 1.06923 0.87316 1.86620 1.29793 1.91325 1.25761 0.85684 0.82215 0.74882 0.80152 1.17019 1.17068 1.16553 1.20755 0.94743 1.01357 1.01604 1.21544 0.99530 0.84385 0.94955 1.46089 1.07961 1.17239 1.31836 1.77637 1.22237 0.98842 1.14665 1.24072 0.89229 0.97550 0.95286 1.21564 0.96593 0.99602 0.97734 1.26233 1.00075 1.08312 1.14254 0.91280 0.91231 0.91142 0.91244 0.91246 0.91275 0.90292 0.90207 0.91155 0.91177 0.89153 0.76957 0.81768 0.85616 0.77736 0.82173 0.80506 0.78477 0.91825 0.91344 0.90319 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.48 8.65 101.05 0.87 1.36 16 2 Si 0.99 -2.30 11.60 -169.99 -1.97 -4.27 16 3 C -0.45 0.70 8.65 101.05 0.87 1.57 16 4 C -0.40 0.73 4.98 37.53 0.19 0.92 16 5 C -0.12 0.19 5.05 -26.60 -0.13 0.06 16 6 C 0.14 0.04 2.03 -68.42 -0.14 -0.10 16 7 N -0.73 -0.25 5.04 -55.63 -0.28 -0.53 16 8 C 0.60 2.07 7.54 -12.90 -0.10 1.97 16 9 O -0.55 -3.58 15.37 5.17 0.08 -3.50 16 10 C -0.31 -0.90 6.17 -104.68 -0.65 -1.54 16 11 C 0.17 0.53 6.76 -84.07 -0.57 -0.04 16 12 C -0.09 -0.18 9.35 -39.53 -0.37 -0.55 16 13 C -0.07 0.03 4.53 -104.54 -0.47 -0.45 16 14 C -0.08 0.12 2.84 36.01 0.10 0.22 16 15 O -0.53 0.49 12.88 -35.23 -0.45 0.04 16 16 Si 0.95 -1.74 27.26 -169.99 -4.63 -6.38 16 17 H -0.25 0.64 7.04 56.52 0.40 1.03 16 18 H -0.25 0.07 7.11 56.52 0.40 0.47 16 19 H -0.24 0.10 7.11 56.52 0.40 0.50 16 20 C -0.16 0.35 8.38 -39.95 -0.33 0.01 16 21 C 0.12 -0.10 11.17 -16.68 -0.19 -0.29 16 22 N -0.27 -0.61 3.86 -10.54 -0.04 -0.65 16 23 N -0.31 -0.89 12.57 30.75 0.39 -0.50 16 24 C 0.12 0.12 11.44 -17.14 -0.20 -0.08 16 25 C -0.12 -0.06 5.18 -26.60 -0.14 -0.19 16 26 C -0.40 0.14 4.98 37.53 0.19 0.33 16 27 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.08 -0.11 7.99 -51.93 -0.41 -0.52 16 34 H 0.08 -0.18 7.99 -51.93 -0.41 -0.59 16 35 H 0.07 -0.12 8.13 -51.93 -0.42 -0.54 16 36 H 0.07 -0.19 7.69 -51.93 -0.40 -0.59 16 37 H 0.09 0.19 7.34 -51.93 -0.38 -0.19 16 38 H 0.40 -1.00 7.50 -40.82 -0.31 -1.30 16 39 H 0.16 0.38 7.01 -52.49 -0.37 0.01 16 40 H 0.13 -0.22 7.71 -51.93 -0.40 -0.62 16 41 H 0.38 -1.85 8.08 45.56 0.37 -1.48 16 42 H 0.16 -0.90 7.25 -52.49 -0.38 -1.28 16 43 H 0.18 -0.66 8.06 -52.48 -0.42 -1.09 16 44 H 0.20 -0.65 7.46 -52.49 -0.39 -1.04 16 45 H 0.06 -0.05 7.69 -51.93 -0.40 -0.45 16 46 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 47 H 0.08 0.04 7.99 -51.93 -0.41 -0.38 16 48 H 0.08 -0.04 7.99 -51.93 -0.41 -0.45 16 LS Contribution 389.12 15.07 5.86 5.86 Total: 0.00 -9.50 389.12 -8.96 -18.46 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: -6.85 Total: -11.73 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.06 Total: 3.21 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: 0.07 Total: -1.69 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.37 Total: -3.46 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: -6.60 Total: -10.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -9.50 -8.96 -18.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.992 kcal (2) G-P(sol) polarization free energy of solvation -9.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds