Wall clock time and date at job start Sun Mar 7 2021 13:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35457 * 125.56357 * 2 1 4 4 C 1.50700 * 126.06805 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46693 * 67.45898 * 4 3 2 6 6 Si 1.86298 * 109.47297 * 307.45767 * 4 3 2 7 7 H 1.48509 * 109.47072 * 66.86080 * 6 4 3 8 8 H 1.48499 * 109.47023 * 186.85781 * 6 4 3 9 9 H 1.48501 * 109.47185 * 306.86328 * 6 4 3 10 10 C 1.39835 * 107.86314 * 180.02562 * 3 2 1 11 11 C 1.50702 * 126.45607 * 180.02562 * 10 3 2 12 12 C 1.37877 * 107.08817 * 0.02562 * 10 3 2 13 13 C 1.46672 * 126.23218 * 179.97438 * 12 10 3 14 14 O 1.21696 * 120.00218 * 359.97438 * 13 12 10 15 15 N 1.34785 * 119.99900 * 180.02562 * 13 12 10 16 16 C 1.46490 * 119.99931 * 180.02562 * 15 13 12 17 17 C 1.52528 * 109.04529 * 82.84968 * 16 15 13 18 18 C 1.53713 * 109.63797 * 197.54640 * 17 16 15 19 19 Si 1.87371 * 107.28735 * 300.87315 * 18 17 16 20 20 C 1.86296 * 109.94858 * 286.15797 * 19 18 17 21 21 C 1.86306 * 110.01967 * 164.94736 * 19 18 17 22 22 C 1.87382 * 107.01002 * 45.53241 * 19 18 17 23 23 C 1.52526 * 109.04105 * 204.99900 * 16 15 13 24 24 N 1.35533 * 125.56410 * 180.30996 * 2 1 3 25 25 H 1.08999 * 109.47465 * 86.74995 * 1 2 3 26 26 H 1.08999 * 109.47146 * 206.75468 * 1 2 3 27 27 H 1.09005 * 109.46888 * 326.75232 * 1 2 3 28 28 H 1.08995 * 109.46866 * 187.45432 * 4 3 2 29 29 H 0.96701 * 114.00294 * 303.32017 * 5 4 3 30 30 H 1.09003 * 109.47335 * 269.98195 * 11 10 3 31 31 H 1.08995 * 109.47247 * 29.98116 * 11 10 3 32 32 H 1.09000 * 109.46989 * 149.98300 * 11 10 3 33 33 H 0.97001 * 119.99621 * 359.97438 * 15 13 12 34 34 H 1.09002 * 108.97364 * 323.91696 * 16 15 13 35 35 H 1.08996 * 109.43710 * 317.59643 * 17 16 15 36 36 H 1.08998 * 109.44079 * 77.50069 * 17 16 15 37 37 H 1.09000 * 109.88912 * 181.42902 * 18 17 16 38 38 H 1.09005 * 109.89815 * 60.32501 * 18 17 16 39 39 H 1.09003 * 109.47736 * 177.56105 * 20 19 18 40 40 H 1.09007 * 109.47212 * 297.56503 * 20 19 18 41 41 H 1.09006 * 109.47247 * 57.55838 * 20 19 18 42 42 H 1.09000 * 109.47017 * 302.39283 * 21 19 18 43 43 H 1.08991 * 109.47313 * 62.39294 * 21 19 18 44 44 H 1.09002 * 109.46792 * 182.39704 * 21 19 18 45 45 H 1.08998 * 109.89512 * 195.03075 * 22 19 18 46 46 H 1.08998 * 109.95808 * 73.94632 * 22 19 18 47 47 H 1.09000 * 109.44489 * 282.50142 * 23 16 15 48 48 H 1.08997 * 109.44758 * 42.39957 * 23 16 15 49 49 H 0.97000 * 125.67795 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0005 5 8 1.1801 2.8210 1.2452 6 14 0.6099 2.7853 -1.3932 7 1 -0.6238 2.0028 -1.1260 8 1 0.2689 4.2269 -1.4970 9 1 1.2199 2.3278 -2.6675 10 6 3.6269 0.6767 -0.0006 11 6 4.8486 1.5592 -0.0003 12 6 3.6122 -0.7019 -0.0015 13 6 4.7860 -1.5814 -0.0029 14 8 5.9049 -1.1029 -0.0038 15 7 4.6253 -2.9197 -0.0043 16 6 5.7976 -3.7981 -0.0051 17 6 6.3035 -3.9544 1.4253 18 6 7.7451 -4.4875 1.4081 19 14 7.7190 -6.1345 0.5150 20 6 6.9555 -7.4372 1.6061 21 6 9.4519 -6.6338 0.0471 22 6 6.6813 -5.9048 -1.0283 23 6 5.4123 -5.1416 -0.6158 24 7 2.2952 -1.1025 -0.0060 25 1 -0.3634 0.0583 -1.0260 26 1 -0.3633 -0.9176 0.4626 27 1 -0.3633 0.8595 0.5635 28 1 2.6724 3.1980 -0.1329 29 1 0.4422 2.2320 1.4543 30 1 5.1431 1.7724 -1.0279 31 1 4.6220 2.4932 0.5139 32 1 5.6642 1.0503 0.5133 33 1 3.7334 -3.3010 -0.0039 34 1 6.5808 -3.3434 -0.6117 35 1 6.2805 -2.9865 1.9259 36 1 5.6639 -4.6552 1.9618 37 1 8.1019 -4.6248 2.4289 38 1 8.3928 -3.7887 0.8787 39 1 6.9046 -8.3814 1.0638 40 1 7.5649 -7.5645 2.5009 41 1 5.9502 -7.1279 1.8923 42 1 9.8986 -5.8572 -0.5737 43 1 10.0484 -6.7653 0.9498 44 1 9.4223 -7.5710 -0.5087 45 1 6.4117 -6.8765 -1.4420 46 1 7.2369 -5.3281 -1.7678 47 1 4.8585 -5.7280 0.1174 48 1 4.7875 -4.9755 -1.4933 49 1 1.9833 -2.0210 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:34:15 Heat of formation + Delta-G solvation = -84.321588 kcal Electronic energy + Delta-G solvation = -26178.308598 eV Core-core repulsion = 22649.515597 eV Total energy + Delta-G solvation = -3528.793000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67012 -40.50714 -37.88146 -37.64482 -34.32770 -33.74003 -32.64333 -32.12646 -29.38912 -29.27695 -28.50658 -27.90124 -26.86406 -25.57236 -23.59115 -22.41007 -21.59048 -20.68200 -20.29189 -19.26645 -17.73087 -17.20791 -16.72915 -16.50271 -16.26159 -15.84016 -15.74589 -15.30222 -14.97172 -14.83045 -14.41600 -14.24393 -14.12114 -14.04871 -13.96801 -13.88220 -13.77864 -13.47563 -13.39714 -13.31720 -13.26018 -13.25573 -13.16346 -13.01573 -12.59680 -12.50268 -12.40536 -12.22529 -12.02248 -11.84567 -11.48395 -10.95325 -10.85808 -10.55745 -10.40903 -10.33933 -10.05069 -9.51865 -8.98386 0.43571 1.17023 1.41391 1.51444 1.67433 1.71850 1.79420 1.82457 1.94576 2.03585 2.13132 2.43584 2.54930 3.59640 3.63380 3.65482 3.83688 3.91991 4.00764 4.06386 4.11988 4.28142 4.29846 4.30681 4.41821 4.55280 4.57842 4.65086 4.66586 4.68181 4.70435 4.71892 4.73095 4.75868 4.82877 4.96883 5.01207 5.08716 5.14857 5.23154 5.26620 5.29481 5.36586 5.39724 5.46924 5.50385 5.55292 5.75861 5.93120 6.28341 6.50725 6.64667 7.22806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.062 3.938 3 C -0.206 4.206 4 C -0.044 4.044 5 O -0.539 6.539 6 Si 0.940 3.060 7 H -0.243 1.243 8 H -0.254 1.254 9 H -0.253 1.253 10 C -0.044 4.044 11 C -0.096 4.096 12 C -0.063 4.063 13 C 0.591 3.409 14 O -0.520 6.520 15 N -0.732 5.732 16 C 0.138 3.862 17 C -0.116 4.116 18 C -0.403 4.403 19 Si 0.991 3.009 20 C -0.445 4.445 21 C -0.447 4.447 22 C -0.403 4.403 23 C -0.116 4.116 24 N -0.534 5.534 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.368 0.632 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.391 0.609 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -4.551 -0.640 6.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.056 4.056 3 C -0.213 4.213 4 C -0.155 4.155 5 O -0.345 6.345 6 Si 0.762 3.238 7 H -0.166 1.166 8 H -0.178 1.178 9 H -0.177 1.177 10 C -0.052 4.052 11 C -0.153 4.153 12 C -0.174 4.174 13 C 0.379 3.621 14 O -0.396 6.396 15 N -0.382 5.382 16 C 0.035 3.965 17 C -0.155 4.155 18 C -0.489 4.489 19 Si 1.187 2.813 20 C -0.553 4.553 21 C -0.555 4.555 22 C -0.489 4.489 23 C -0.154 4.154 24 N -0.131 5.131 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.216 0.784 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.341 -3.787 -1.313 5.218 hybrid contribution -0.744 -1.295 0.336 1.531 sum -4.085 -5.082 -0.977 6.593 Atomic orbital electron populations 1.20817 0.87607 1.04068 1.03740 1.20228 0.93356 0.85969 1.06077 1.19494 0.92919 0.94806 1.14110 1.24334 1.03160 0.93243 0.94753 1.86565 1.50473 1.58857 1.38578 0.86010 0.79031 0.81216 0.77570 1.16614 1.17811 1.17701 1.19781 0.94737 0.90897 0.99821 1.20426 0.94415 0.97973 1.02528 1.20135 0.82751 0.94103 1.20437 1.16997 0.87511 0.81301 0.76293 1.90840 1.24057 1.74903 1.49776 1.46042 1.09766 1.05795 1.76628 1.21072 0.88024 0.90026 0.97420 1.21559 0.96145 1.02053 0.95725 1.26237 0.98033 1.16210 1.08445 0.79664 0.67162 0.67273 0.67200 1.26093 1.07072 1.12168 1.09979 1.26068 1.18303 1.05634 1.05527 1.26211 1.04819 1.03054 1.14789 1.21460 0.98566 0.94461 1.00872 1.41757 1.05390 1.08207 1.57707 0.89753 0.90539 0.89750 0.86694 0.78403 0.91142 0.91446 0.89863 0.77545 0.88918 0.91302 0.91829 0.90412 0.90219 0.91239 0.91171 0.91330 0.91100 0.91169 0.91239 0.90130 0.90202 0.91217 0.91281 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 8.20 36.00 0.30 0.65 16 2 C 0.06 -0.03 6.74 -81.95 -0.55 -0.59 16 3 C -0.21 -0.30 4.72 -105.02 -0.50 -0.79 16 4 C -0.04 -0.03 2.86 36.01 0.10 0.08 16 5 O -0.54 -0.59 12.85 -35.23 -0.45 -1.04 16 6 Si 0.94 -0.17 25.73 -169.99 -4.37 -4.55 16 7 H -0.24 0.42 5.20 56.52 0.29 0.72 16 8 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 9 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 10 C -0.04 -0.13 6.21 -104.16 -0.65 -0.78 16 11 C -0.10 -0.27 9.46 36.01 0.34 0.07 16 12 C -0.06 -0.13 7.06 -81.98 -0.58 -0.71 16 13 C 0.59 1.70 7.54 -12.85 -0.10 1.60 16 14 O -0.52 -3.22 14.47 5.19 0.08 -3.15 16 15 N -0.73 0.25 5.04 -55.59 -0.28 -0.03 16 16 C 0.14 -0.04 2.03 -68.42 -0.14 -0.17 16 17 C -0.12 0.00 5.18 -26.60 -0.14 -0.14 16 18 C -0.40 0.30 4.98 37.53 0.19 0.49 16 19 Si 0.99 -2.68 11.60 -169.99 -1.97 -4.65 16 20 C -0.45 0.87 8.65 101.05 0.87 1.74 16 21 C -0.45 0.62 8.65 101.05 0.87 1.49 16 22 C -0.40 0.90 4.98 37.53 0.19 1.08 16 23 C -0.12 0.25 5.05 -26.60 -0.13 0.11 16 24 N -0.53 0.55 5.99 -5.70 -0.03 0.52 16 25 H 0.08 -0.30 6.89 -51.93 -0.36 -0.65 16 26 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 27 H 0.08 -0.36 4.94 -51.93 -0.26 -0.62 16 28 H 0.12 0.06 6.92 -51.93 -0.36 -0.30 16 29 H 0.37 -0.85 6.62 45.56 0.30 -0.55 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.12 7.43 -51.93 -0.39 -0.26 16 32 H 0.08 0.36 6.49 -51.93 -0.34 0.03 16 33 H 0.39 -1.27 7.71 -40.82 -0.31 -1.59 16 34 H 0.09 0.15 7.34 -51.93 -0.38 -0.23 16 35 H 0.07 0.17 7.92 -51.93 -0.41 -0.25 16 36 H 0.06 -0.08 7.69 -51.93 -0.40 -0.48 16 37 H 0.08 -0.07 7.99 -51.93 -0.41 -0.48 16 38 H 0.08 0.01 7.99 -51.93 -0.41 -0.40 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 43 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.08 -0.21 7.99 -51.93 -0.41 -0.63 16 46 H 0.08 -0.14 7.99 -51.93 -0.41 -0.55 16 47 H 0.07 -0.23 7.69 -51.93 -0.40 -0.63 16 48 H 0.07 -0.15 8.13 -51.93 -0.42 -0.57 16 49 H 0.42 -1.81 8.19 -40.82 -0.33 -2.14 16 LS Contribution 377.39 15.07 5.69 5.69 Total: 0.00 -7.53 377.39 -9.22 -16.75 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -7.95 Total: -13.66 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 0.08 Total: 4.13 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -0.31 Total: 0.49 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.38 Total: -4.19 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: -6.35 Total: -9.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -7.53 -9.22 -16.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.574 kcal (2) G-P(sol) polarization free energy of solvation -7.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds