Wall clock time and date at job start Sun Mar 7 2021 13:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35457 * 125.56357 * 2 1 4 4 C 1.50700 * 126.06805 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46693 * 67.45898 * 4 3 2 6 6 Si 1.86298 * 109.47297 * 307.45767 * 4 3 2 7 7 H 1.48509 * 109.47072 * 66.86080 * 6 4 3 8 8 H 1.48499 * 109.47023 * 186.85781 * 6 4 3 9 9 H 1.48501 * 109.47185 * 306.86328 * 6 4 3 10 10 C 1.39835 * 107.86314 * 180.02562 * 3 2 1 11 11 C 1.50702 * 126.45607 * 180.02562 * 10 3 2 12 12 C 1.37877 * 107.08817 * 0.02562 * 10 3 2 13 13 C 1.46672 * 126.23218 * 179.97438 * 12 10 3 14 14 O 1.21696 * 120.00218 * 359.97438 * 13 12 10 15 15 N 1.34785 * 119.99900 * 180.02562 * 13 12 10 16 16 C 1.46490 * 119.99931 * 180.02562 * 15 13 12 17 17 C 1.52528 * 109.04529 * 82.84968 * 16 15 13 18 18 C 1.53713 * 109.63797 * 197.54640 * 17 16 15 19 19 Si 1.87371 * 107.28735 * 300.87315 * 18 17 16 20 20 C 1.86296 * 109.94858 * 286.15797 * 19 18 17 21 21 C 1.86306 * 110.01967 * 164.94736 * 19 18 17 22 22 C 1.87382 * 107.01002 * 45.53241 * 19 18 17 23 23 C 1.52526 * 109.04105 * 204.99900 * 16 15 13 24 24 N 1.35533 * 125.56410 * 180.30996 * 2 1 3 25 25 H 1.08999 * 109.47465 * 86.74995 * 1 2 3 26 26 H 1.08999 * 109.47146 * 206.75468 * 1 2 3 27 27 H 1.09005 * 109.46888 * 326.75232 * 1 2 3 28 28 H 1.08995 * 109.46866 * 187.45432 * 4 3 2 29 29 H 0.96701 * 114.00294 * 303.32017 * 5 4 3 30 30 H 1.09003 * 109.47335 * 269.98195 * 11 10 3 31 31 H 1.08995 * 109.47247 * 29.98116 * 11 10 3 32 32 H 1.09000 * 109.46989 * 149.98300 * 11 10 3 33 33 H 0.97001 * 119.99621 * 359.97438 * 15 13 12 34 34 H 1.09002 * 108.97364 * 323.91696 * 16 15 13 35 35 H 1.08996 * 109.43710 * 317.59643 * 17 16 15 36 36 H 1.08998 * 109.44079 * 77.50069 * 17 16 15 37 37 H 1.09000 * 109.88912 * 181.42902 * 18 17 16 38 38 H 1.09005 * 109.89815 * 60.32501 * 18 17 16 39 39 H 1.09003 * 109.47736 * 177.56105 * 20 19 18 40 40 H 1.09007 * 109.47212 * 297.56503 * 20 19 18 41 41 H 1.09006 * 109.47247 * 57.55838 * 20 19 18 42 42 H 1.09000 * 109.47017 * 302.39283 * 21 19 18 43 43 H 1.08991 * 109.47313 * 62.39294 * 21 19 18 44 44 H 1.09002 * 109.46792 * 182.39704 * 21 19 18 45 45 H 1.08998 * 109.89512 * 195.03075 * 22 19 18 46 46 H 1.08998 * 109.95808 * 73.94632 * 22 19 18 47 47 H 1.09000 * 109.44489 * 282.50142 * 23 16 15 48 48 H 1.08997 * 109.44758 * 42.39957 * 23 16 15 49 49 H 0.97000 * 125.67795 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0005 5 8 1.1801 2.8210 1.2452 6 14 0.6099 2.7853 -1.3932 7 1 -0.6238 2.0028 -1.1260 8 1 0.2689 4.2269 -1.4970 9 1 1.2199 2.3278 -2.6675 10 6 3.6269 0.6767 -0.0006 11 6 4.8486 1.5592 -0.0003 12 6 3.6122 -0.7019 -0.0015 13 6 4.7860 -1.5814 -0.0029 14 8 5.9049 -1.1029 -0.0038 15 7 4.6253 -2.9197 -0.0043 16 6 5.7976 -3.7981 -0.0051 17 6 6.3035 -3.9544 1.4253 18 6 7.7451 -4.4875 1.4081 19 14 7.7190 -6.1345 0.5150 20 6 6.9555 -7.4372 1.6061 21 6 9.4519 -6.6338 0.0471 22 6 6.6813 -5.9048 -1.0283 23 6 5.4123 -5.1416 -0.6158 24 7 2.2952 -1.1025 -0.0060 25 1 -0.3634 0.0583 -1.0260 26 1 -0.3633 -0.9176 0.4626 27 1 -0.3633 0.8595 0.5635 28 1 2.6724 3.1980 -0.1329 29 1 0.4422 2.2320 1.4543 30 1 5.1431 1.7724 -1.0279 31 1 4.6220 2.4932 0.5139 32 1 5.6642 1.0503 0.5133 33 1 3.7334 -3.3010 -0.0039 34 1 6.5808 -3.3434 -0.6117 35 1 6.2805 -2.9865 1.9259 36 1 5.6639 -4.6552 1.9618 37 1 8.1019 -4.6248 2.4289 38 1 8.3928 -3.7887 0.8787 39 1 6.9046 -8.3814 1.0638 40 1 7.5649 -7.5645 2.5009 41 1 5.9502 -7.1279 1.8923 42 1 9.8986 -5.8572 -0.5737 43 1 10.0484 -6.7653 0.9498 44 1 9.4223 -7.5710 -0.5087 45 1 6.4117 -6.8765 -1.4420 46 1 7.2369 -5.3281 -1.7678 47 1 4.8585 -5.7280 0.1174 48 1 4.7875 -4.9755 -1.4933 49 1 1.9833 -2.0210 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:34:14 Heat of formation + Delta-G solvation = -80.956232 kcal Electronic energy + Delta-G solvation = -26178.162665 eV Core-core repulsion = 22649.515597 eV Total energy + Delta-G solvation = -3528.647068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.71282 -40.63269 -37.93907 -37.70731 -34.40549 -33.81256 -32.58456 -32.03652 -29.31705 -29.20994 -28.34567 -27.96541 -26.90340 -25.54872 -23.53079 -22.44637 -21.61978 -20.71949 -20.36378 -19.30285 -17.75759 -17.25594 -16.78155 -16.56788 -16.22776 -15.82810 -15.79357 -15.28051 -14.94361 -14.89600 -14.41967 -14.32590 -14.05414 -13.96385 -13.90696 -13.72944 -13.68889 -13.40201 -13.37085 -13.31432 -13.21931 -13.16268 -13.06627 -12.95725 -12.63141 -12.53196 -12.41364 -12.16608 -12.07841 -11.77932 -11.37953 -11.14639 -10.73739 -10.47383 -10.42242 -10.36072 -10.06093 -9.58923 -9.02324 0.33232 1.15647 1.42490 1.50392 1.70123 1.83314 1.90251 1.98064 2.01925 2.03685 2.14107 2.26047 2.67738 3.66690 3.69816 3.78824 3.83166 3.98459 4.01926 4.06319 4.18397 4.36078 4.38171 4.51023 4.51353 4.60391 4.63490 4.65197 4.78110 4.79260 4.81018 4.82514 4.83876 4.87080 4.89094 4.95380 5.01357 5.12713 5.13945 5.20006 5.24285 5.26052 5.36115 5.46344 5.49178 5.59663 5.67994 5.70316 5.80141 6.36655 6.53104 6.80623 7.10412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.079 3.921 3 C -0.227 4.227 4 C -0.049 4.049 5 O -0.555 6.555 6 Si 0.973 3.027 7 H -0.208 1.208 8 H -0.279 1.279 9 H -0.278 1.278 10 C -0.074 4.074 11 C -0.092 4.092 12 C -0.079 4.079 13 C 0.586 3.414 14 O -0.565 6.565 15 N -0.716 5.716 16 C 0.138 3.862 17 C -0.115 4.115 18 C -0.423 4.423 19 Si 1.061 2.939 20 C -0.453 4.453 21 C -0.466 4.466 22 C -0.411 4.411 23 C -0.112 4.112 24 N -0.517 5.517 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.383 0.617 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.408 0.592 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -6.628 -0.666 9.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.041 4.041 3 C -0.234 4.234 4 C -0.159 4.159 5 O -0.363 6.363 6 Si 0.796 3.204 7 H -0.129 1.129 8 H -0.205 1.205 9 H -0.203 1.203 10 C -0.082 4.082 11 C -0.149 4.149 12 C -0.191 4.191 13 C 0.375 3.625 14 O -0.444 6.444 15 N -0.367 5.367 16 C 0.034 3.966 17 C -0.153 4.153 18 C -0.507 4.507 19 Si 1.253 2.747 20 C -0.561 4.561 21 C -0.572 4.572 22 C -0.496 4.496 23 C -0.150 4.150 24 N -0.116 5.116 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.233 0.767 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.244 0.756 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.089 -5.914 -1.311 8.589 hybrid contribution 0.142 -0.605 0.366 0.721 sum -5.946 -6.519 -0.945 8.874 Atomic orbital electron populations 1.21039 0.84957 1.06026 1.04832 1.20685 0.94761 0.85210 1.03403 1.19646 0.92489 0.95853 1.15368 1.24438 1.03471 0.92770 0.95175 1.86530 1.51279 1.59601 1.38862 0.85574 0.79564 0.79838 0.75451 1.12916 1.20453 1.20267 1.20003 0.95458 0.91674 1.01098 1.20326 0.94265 0.98134 1.02186 1.19969 0.83738 0.93771 1.21581 1.17212 0.87185 0.82260 0.75853 1.90813 1.25743 1.75832 1.52035 1.45911 1.10792 1.04792 1.75214 1.21105 0.87509 0.90993 0.97001 1.21548 0.97110 1.00876 0.95785 1.26556 0.97265 1.18036 1.08834 0.78612 0.65579 0.64618 0.65902 1.26166 1.07445 1.12473 1.09985 1.26296 1.19746 1.05745 1.05450 1.26299 1.04858 1.03565 1.14920 1.21467 0.98896 0.93121 1.01496 1.41702 1.04111 1.09227 1.56542 0.88812 0.88142 0.88462 0.87710 0.76720 0.91302 0.90958 0.91993 0.75563 0.91425 0.94512 0.89808 0.90531 0.91958 0.90694 0.91457 0.90675 0.91742 0.91453 0.90804 0.88760 0.90924 0.89040 0.90749 0.72654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.09 8.20 71.23 0.58 1.67 16 2 C 0.08 -0.18 6.74 41.34 0.28 0.10 16 3 C -0.23 -0.75 4.72 -20.12 -0.09 -0.85 16 4 C -0.05 -0.09 2.86 71.24 0.20 0.11 16 5 O -0.55 -1.16 12.85 -148.98 -1.91 -3.08 16 6 Si 0.97 -0.69 25.73 68.60 1.77 1.07 16 7 H -0.21 1.34 5.20 99.48 0.52 1.86 16 8 H -0.28 -0.92 7.11 99.48 0.71 -0.21 16 9 H -0.28 -0.89 7.11 99.48 0.71 -0.18 16 10 C -0.07 -0.59 6.21 -19.56 -0.12 -0.71 16 11 C -0.09 -0.83 9.46 71.24 0.67 -0.16 16 12 C -0.08 -0.42 7.06 40.35 0.28 -0.14 16 13 C 0.59 4.60 7.54 86.44 0.65 5.25 16 14 O -0.57 -9.11 14.47 -4.33 -0.06 -9.18 16 15 N -0.72 -0.01 5.04 -448.01 -2.26 -2.27 16 16 C 0.14 0.06 2.03 44.68 0.09 0.15 16 17 C -0.11 -0.15 5.18 30.68 0.16 0.01 16 18 C -0.42 -0.06 4.98 72.22 0.36 0.30 16 19 Si 1.06 -5.96 11.60 68.60 0.80 -5.16 16 20 C -0.45 2.44 8.65 113.37 0.98 3.42 16 21 C -0.47 1.10 8.65 113.37 0.98 2.08 16 22 C -0.41 2.16 4.98 72.22 0.36 2.52 16 23 C -0.11 0.60 5.05 30.68 0.15 0.76 16 24 N -0.52 1.48 5.99 -171.93 -1.03 0.45 16 25 H 0.09 -0.99 6.89 -2.39 -0.02 -1.01 16 26 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 27 H 0.10 -1.15 4.94 -2.38 -0.01 -1.16 16 28 H 0.10 0.32 6.92 -2.39 -0.02 0.30 16 29 H 0.38 -2.24 6.62 -74.06 -0.49 -2.73 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.49 7.43 -2.39 -0.02 0.47 16 32 H 0.06 0.81 6.49 -2.39 -0.02 0.79 16 33 H 0.41 -2.98 7.71 -92.71 -0.72 -3.70 16 34 H 0.07 0.39 7.34 -2.39 -0.02 0.37 16 35 H 0.04 0.28 7.92 -2.39 -0.02 0.26 16 36 H 0.08 -0.26 7.69 -2.39 -0.02 -0.28 16 37 H 0.08 -0.01 7.99 -2.39 -0.02 -0.03 16 38 H 0.06 0.21 7.99 -2.38 -0.02 0.19 16 39 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 40 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 41 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 42 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 43 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 44 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 45 H 0.09 -0.69 7.99 -2.39 -0.02 -0.71 16 46 H 0.07 -0.24 7.99 -2.39 -0.02 -0.26 16 47 H 0.09 -0.85 7.69 -2.39 -0.02 -0.86 16 48 H 0.07 -0.43 8.13 -2.39 -0.02 -0.45 16 49 H 0.43 -4.56 8.19 -92.71 -0.76 -5.32 16 Total: 0.00 -21.29 377.39 2.41 -18.89 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: -0.43 Total: -15.25 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.55 Total: 14.51 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -3.29 Total: -1.82 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.98 Total: -12.25 kcal Atomic # 14 Polarization: -6.65 SS G_CDS: 2.56 Total: -4.09 kcal Total: -21.29 2.41 -18.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.069 kcal (2) G-P(sol) polarization free energy of solvation -21.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds