Wall clock time and date at job start Sun Mar 7 2021 13:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 110.00099 * 2 1 4 4 C 1.87378 * 109.94345 * 121.22161 * 2 1 3 5 5 C 1.53717 * 107.27887 * 164.90175 * 4 2 1 6 6 C 1.52521 * 109.64410 * 300.87301 * 5 4 2 7 7 N 1.46505 * 109.04397 * 197.54894 * 6 5 4 8 8 C 1.34770 * 120.00080 * 155.00082 * 7 6 5 9 9 O 1.21574 * 119.99975 * 0.02562 * 8 7 6 10 10 C 1.47692 * 120.00414 * 180.02562 * 8 7 6 11 11 C 1.39616 * 120.16262 * 359.72069 * 10 8 7 12 12 C 1.37905 * 119.87835 * 180.32007 * 11 10 8 13 13 C 1.50700 * 119.89034 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.47193 * 299.97858 * 13 12 11 15 15 Si 1.86295 * 109.47007 * 179.97438 * 13 12 11 16 16 H 1.48506 * 109.47362 * 59.99662 * 15 13 12 17 17 H 1.48503 * 109.47322 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47287 * 299.99923 * 15 13 12 19 19 C 1.38408 * 120.21473 * 359.93550 * 12 11 10 20 20 C 1.38244 * 120.34301 * 0.04187 * 19 12 11 21 21 C 1.38273 * 120.11844 * 0.02562 * 20 19 12 22 22 F 1.35100 * 120.11629 * 179.97438 * 21 20 19 23 23 C 1.52525 * 111.65553 * 76.99372 * 6 5 4 24 24 C 1.53711 * 109.63735 * 283.01021 * 23 6 5 25 25 H 1.08991 * 109.46746 * 298.78144 * 1 2 3 26 26 H 1.09008 * 109.46860 * 58.78285 * 1 2 3 27 27 H 1.09002 * 109.46763 * 178.77716 * 1 2 3 28 28 H 1.08998 * 109.47173 * 181.21502 * 3 2 1 29 29 H 1.08999 * 109.47517 * 301.22306 * 3 2 1 30 30 H 1.09000 * 109.47055 * 61.22191 * 3 2 1 31 31 H 1.08997 * 109.89802 * 45.46496 * 4 2 1 32 32 H 1.08991 * 109.95818 * 284.38112 * 4 2 1 33 33 H 1.09003 * 109.44322 * 180.81666 * 5 4 2 34 34 H 1.09005 * 109.44150 * 60.92976 * 5 4 2 35 35 H 1.09000 * 109.04698 * 316.50431 * 6 5 4 36 36 H 0.97001 * 119.99711 * 335.00727 * 7 6 5 37 37 H 1.08004 * 120.06290 * 0.27950 * 11 10 8 38 38 H 1.08997 * 109.47204 * 59.97708 * 13 12 11 39 39 H 0.96704 * 113.99899 * 299.99833 * 14 13 12 40 40 H 1.08006 * 119.83162 * 180.02562 * 19 12 11 41 41 H 1.08006 * 119.94194 * 179.97438 * 20 19 12 42 42 H 1.09005 * 109.44428 * 43.05991 * 23 6 5 43 43 H 1.08998 * 109.44137 * 162.95915 * 23 6 5 44 44 H 1.09004 * 109.89312 * 299.67718 * 24 23 6 45 45 H 1.09010 * 109.89304 * 178.57041 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5022 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2618 6 6 4.1431 -2.0548 -0.0001 7 7 5.4685 -2.6791 -0.0002 8 6 5.6761 -3.8196 -0.6875 9 8 4.7637 -4.3301 -1.3078 10 6 7.0121 -4.4493 -0.6871 11 6 8.0639 -3.8628 0.0193 12 6 9.3106 -4.4523 0.0102 13 6 10.4462 -3.8192 0.7722 14 8 10.6820 -2.5026 0.2690 15 14 11.9846 -4.8488 0.5630 16 1 12.3369 -4.9254 -0.8776 17 1 13.1035 -4.2253 1.3144 18 1 11.7395 -6.2170 1.0860 19 6 9.5220 -5.6238 -0.6958 20 6 8.4868 -6.2125 -1.3980 21 6 7.2316 -5.6327 -1.3996 22 9 6.2201 -6.2077 -2.0863 23 6 3.9901 -1.2118 -1.2620 24 6 2.5023 -0.9129 -1.5064 25 1 -0.3632 0.4948 0.9007 26 1 -0.3633 0.5327 -0.8789 27 1 -0.3633 -1.0275 -0.0219 28 1 3.5900 1.7406 -0.0218 29 1 2.1240 2.2743 -0.8788 30 1 2.1596 2.2612 0.9007 31 1 1.9530 -1.8456 1.6355 32 1 2.3899 -0.2907 2.3940 33 1 4.3954 -1.7575 2.1140 34 1 4.5332 -0.2746 1.1403 35 1 3.3825 -2.8355 -0.0008 36 1 6.1966 -2.2715 0.4946 37 1 7.9016 -2.9488 0.5714 38 1 10.1876 -3.7631 1.8296 39 1 10.9177 -2.4762 -0.6685 40 1 10.5008 -6.0804 -0.6983 41 1 8.6592 -7.1265 -1.9471 42 1 4.5333 -0.2745 -1.1404 43 1 4.3954 -1.7574 -2.1141 44 1 1.9530 -1.8455 -1.6357 45 1 2.3900 -0.2893 -2.3934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:37:56 Heat of formation + Delta-G solvation = -136.400440 kcal Electronic energy + Delta-G solvation = -25761.819880 eV Core-core repulsion = 22009.589604 eV Total energy + Delta-G solvation = -3752.230276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.83626 -41.36404 -40.10447 -37.92845 -37.48404 -34.25915 -32.52680 -32.23165 -32.07806 -29.29766 -28.47349 -26.99360 -26.72888 -25.09735 -23.53919 -23.10617 -21.50228 -21.35689 -19.26131 -18.41892 -18.30987 -17.54790 -16.86051 -16.75680 -16.40724 -16.21668 -16.05478 -15.74113 -15.61398 -15.33062 -15.02274 -14.66545 -14.35875 -14.07493 -14.01527 -13.86613 -13.78616 -13.44780 -13.38577 -13.28562 -13.23611 -13.12446 -12.98262 -12.87048 -12.55458 -12.44432 -12.24561 -12.18346 -11.83772 -11.77362 -11.03141 -10.84286 -10.62010 -10.49418 -10.41794 -10.27206 -9.99485 -9.82141 -0.50329 -0.10111 0.97425 1.29328 1.35819 1.69494 1.71313 1.77750 1.82684 1.86164 2.06204 2.51282 2.58518 3.02722 3.21382 3.35737 3.45563 3.52844 3.73394 3.86603 4.00653 4.03568 4.17449 4.32045 4.33920 4.45595 4.47023 4.59831 4.66416 4.70330 4.71125 4.74220 4.74842 4.76437 4.77837 4.85777 4.88061 5.02753 5.06550 5.18831 5.27589 5.31199 5.41720 5.46138 5.52807 5.53834 5.59253 6.35479 6.44830 7.19928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.990 3.010 3 C -0.445 4.445 4 C -0.402 4.402 5 C -0.116 4.116 6 C 0.137 3.863 7 N -0.722 5.722 8 C 0.558 3.442 9 O -0.519 6.519 10 C -0.174 4.174 11 C -0.029 4.029 12 C -0.141 4.141 13 C -0.079 4.079 14 O -0.537 6.537 15 Si 0.946 3.054 16 H -0.249 1.249 17 H -0.250 1.250 18 H -0.248 1.248 19 C -0.069 4.069 20 C -0.156 4.156 21 C 0.166 3.834 22 F -0.111 7.111 23 C -0.117 4.117 24 C -0.403 4.403 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.379 0.621 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 2.245 2.475 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.186 2.814 3 C -0.553 4.553 4 C -0.489 4.489 5 C -0.154 4.154 6 C 0.033 3.967 7 N -0.374 5.374 8 C 0.344 3.656 9 O -0.395 6.395 10 C -0.178 4.178 11 C -0.048 4.048 12 C -0.142 4.142 13 C -0.190 4.190 14 O -0.342 6.342 15 Si 0.768 3.232 16 H -0.172 1.172 17 H -0.174 1.174 18 H -0.172 1.172 19 C -0.087 4.087 20 C -0.175 4.175 21 C 0.146 3.854 22 F -0.089 7.089 23 C -0.155 4.155 24 C -0.490 4.490 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.235 0.765 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.226 0.774 40 H 0.153 0.847 41 H 0.166 0.834 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.440 1.515 2.518 4.524 hybrid contribution -0.069 0.069 -0.425 0.436 sum 3.371 1.583 2.093 4.273 Atomic orbital electron populations 1.26071 1.20471 1.04560 1.04428 0.79674 0.67104 0.67346 0.67233 1.26083 1.06290 1.18447 1.04458 1.26205 0.99360 1.08564 1.14723 1.21462 0.97529 0.99893 0.96501 1.21097 0.84449 0.96012 0.95129 1.46029 1.13627 1.25469 1.52276 1.17961 0.87312 0.80733 0.79554 1.90872 1.43635 1.62903 1.42095 1.20128 0.95612 0.97633 1.04428 1.21033 0.90498 0.98314 0.94943 1.20309 0.96235 0.96642 1.00987 1.24973 1.02874 0.90201 1.00910 1.86529 1.91782 1.25341 1.30556 0.85718 0.77002 0.78740 0.81735 1.17235 1.17377 1.17189 1.21117 0.99025 0.94319 0.94252 1.21143 0.91095 1.02386 1.02877 1.17748 0.85228 0.91024 0.91437 1.91630 1.58271 1.82979 1.75992 1.21561 0.96830 0.99619 0.97497 1.26245 0.99895 1.08387 1.14427 0.91236 0.91197 0.91132 0.91232 0.91206 0.91230 0.90256 0.90074 0.91100 0.91037 0.89018 0.76528 0.84089 0.85936 0.77410 0.84731 0.83363 0.91631 0.91405 0.90296 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.51 8.65 101.05 0.87 1.38 16 2 Si 0.99 -2.41 11.60 -169.99 -1.97 -4.38 16 3 C -0.44 0.77 8.65 101.05 0.87 1.65 16 4 C -0.40 0.78 4.98 37.53 0.19 0.97 16 5 C -0.12 0.21 5.05 -26.60 -0.13 0.07 16 6 C 0.14 0.03 2.03 -68.42 -0.14 -0.11 16 7 N -0.72 -0.10 5.00 -55.27 -0.28 -0.37 16 8 C 0.56 1.82 7.52 -12.40 -0.09 1.73 16 9 O -0.52 -3.80 15.01 5.30 0.08 -3.72 16 10 C -0.17 -0.28 5.88 -104.91 -0.62 -0.89 16 11 C -0.03 0.03 9.09 -39.19 -0.36 -0.32 16 12 C -0.14 0.25 5.38 -104.68 -0.56 -0.31 16 13 C -0.08 0.23 2.82 36.01 0.10 0.33 16 14 O -0.54 1.19 12.76 -35.23 -0.45 0.74 16 15 Si 0.95 -2.47 25.06 -169.99 -4.26 -6.73 16 16 H -0.25 0.60 7.11 56.52 0.40 1.00 16 17 H -0.25 0.21 7.11 56.52 0.40 0.61 16 18 H -0.25 0.51 7.11 56.52 0.40 0.91 16 19 C -0.07 0.11 8.66 -39.52 -0.34 -0.23 16 20 C -0.16 0.04 10.01 -39.57 -0.40 -0.35 16 21 C 0.17 0.40 7.29 -38.96 -0.28 0.12 16 22 F -0.11 -0.58 15.55 2.25 0.04 -0.54 16 23 C -0.12 -0.04 5.18 -26.60 -0.14 -0.18 16 24 C -0.40 0.16 4.98 37.53 0.19 0.35 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.08 -0.12 7.99 -51.93 -0.41 -0.53 16 32 H 0.08 -0.20 7.99 -51.93 -0.41 -0.61 16 33 H 0.07 -0.13 8.13 -51.93 -0.42 -0.55 16 34 H 0.07 -0.21 7.69 -51.93 -0.40 -0.61 16 35 H 0.09 0.19 7.34 -51.93 -0.38 -0.19 16 36 H 0.40 -1.06 6.62 -40.82 -0.27 -1.33 16 37 H 0.14 -0.47 6.40 -52.48 -0.34 -0.81 16 38 H 0.12 -0.47 7.96 -51.93 -0.41 -0.89 16 39 H 0.38 -1.94 8.70 45.56 0.40 -1.55 16 40 H 0.14 -0.44 4.86 -52.48 -0.25 -0.70 16 41 H 0.15 -0.31 8.06 -52.48 -0.42 -0.74 16 42 H 0.07 -0.07 7.69 -51.93 -0.40 -0.47 16 43 H 0.07 0.19 7.92 -51.93 -0.41 -0.23 16 44 H 0.08 0.04 7.99 -51.93 -0.41 -0.37 16 45 H 0.08 -0.04 7.99 -51.92 -0.41 -0.46 16 LS Contribution 363.59 15.07 5.48 5.48 Total: 0.00 -7.43 363.59 -8.45 -15.88 By element: Atomic # 1 Polarization: -4.31 SS G_CDS: -6.25 Total: -10.56 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.84 Total: 4.19 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -0.28 Total: -0.37 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: -0.37 Total: -2.98 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.04 Total: -0.54 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: -6.23 Total: -11.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -7.43 -8.45 -15.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.517 kcal (2) G-P(sol) polarization free energy of solvation -7.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds