Wall clock time and date at job start Sun Mar 7 2021 13:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 110.00099 * 2 1 4 4 C 1.87378 * 109.94345 * 121.22161 * 2 1 3 5 5 C 1.53717 * 107.27887 * 164.90175 * 4 2 1 6 6 C 1.52521 * 109.64410 * 300.87301 * 5 4 2 7 7 N 1.46505 * 109.04397 * 197.54894 * 6 5 4 8 8 C 1.34770 * 120.00080 * 155.00082 * 7 6 5 9 9 O 1.21574 * 119.99975 * 0.02562 * 8 7 6 10 10 C 1.47692 * 120.00414 * 180.02562 * 8 7 6 11 11 C 1.39616 * 120.16262 * 359.72069 * 10 8 7 12 12 C 1.37905 * 119.87835 * 180.32007 * 11 10 8 13 13 C 1.50700 * 119.89034 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.47193 * 299.97858 * 13 12 11 15 15 Si 1.86295 * 109.47007 * 179.97438 * 13 12 11 16 16 H 1.48506 * 109.47362 * 59.99662 * 15 13 12 17 17 H 1.48503 * 109.47322 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47287 * 299.99923 * 15 13 12 19 19 C 1.38408 * 120.21473 * 359.93550 * 12 11 10 20 20 C 1.38244 * 120.34301 * 0.04187 * 19 12 11 21 21 C 1.38273 * 120.11844 * 0.02562 * 20 19 12 22 22 F 1.35100 * 120.11629 * 179.97438 * 21 20 19 23 23 C 1.52525 * 111.65553 * 76.99372 * 6 5 4 24 24 C 1.53711 * 109.63735 * 283.01021 * 23 6 5 25 25 H 1.08991 * 109.46746 * 298.78144 * 1 2 3 26 26 H 1.09008 * 109.46860 * 58.78285 * 1 2 3 27 27 H 1.09002 * 109.46763 * 178.77716 * 1 2 3 28 28 H 1.08998 * 109.47173 * 181.21502 * 3 2 1 29 29 H 1.08999 * 109.47517 * 301.22306 * 3 2 1 30 30 H 1.09000 * 109.47055 * 61.22191 * 3 2 1 31 31 H 1.08997 * 109.89802 * 45.46496 * 4 2 1 32 32 H 1.08991 * 109.95818 * 284.38112 * 4 2 1 33 33 H 1.09003 * 109.44322 * 180.81666 * 5 4 2 34 34 H 1.09005 * 109.44150 * 60.92976 * 5 4 2 35 35 H 1.09000 * 109.04698 * 316.50431 * 6 5 4 36 36 H 0.97001 * 119.99711 * 335.00727 * 7 6 5 37 37 H 1.08004 * 120.06290 * 0.27950 * 11 10 8 38 38 H 1.08997 * 109.47204 * 59.97708 * 13 12 11 39 39 H 0.96704 * 113.99899 * 299.99833 * 14 13 12 40 40 H 1.08006 * 119.83162 * 180.02562 * 19 12 11 41 41 H 1.08006 * 119.94194 * 179.97438 * 20 19 12 42 42 H 1.09005 * 109.44428 * 43.05991 * 23 6 5 43 43 H 1.08998 * 109.44137 * 162.95915 * 23 6 5 44 44 H 1.09004 * 109.89312 * 299.67718 * 24 23 6 45 45 H 1.09010 * 109.89304 * 178.57041 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5022 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2618 6 6 4.1431 -2.0548 -0.0001 7 7 5.4685 -2.6791 -0.0002 8 6 5.6761 -3.8196 -0.6875 9 8 4.7637 -4.3301 -1.3078 10 6 7.0121 -4.4493 -0.6871 11 6 8.0639 -3.8628 0.0193 12 6 9.3106 -4.4523 0.0102 13 6 10.4462 -3.8192 0.7722 14 8 10.6820 -2.5026 0.2690 15 14 11.9846 -4.8488 0.5630 16 1 12.3369 -4.9254 -0.8776 17 1 13.1035 -4.2253 1.3144 18 1 11.7395 -6.2170 1.0860 19 6 9.5220 -5.6238 -0.6958 20 6 8.4868 -6.2125 -1.3980 21 6 7.2316 -5.6327 -1.3996 22 9 6.2201 -6.2077 -2.0863 23 6 3.9901 -1.2118 -1.2620 24 6 2.5023 -0.9129 -1.5064 25 1 -0.3632 0.4948 0.9007 26 1 -0.3633 0.5327 -0.8789 27 1 -0.3633 -1.0275 -0.0219 28 1 3.5900 1.7406 -0.0218 29 1 2.1240 2.2743 -0.8788 30 1 2.1596 2.2612 0.9007 31 1 1.9530 -1.8456 1.6355 32 1 2.3899 -0.2907 2.3940 33 1 4.3954 -1.7575 2.1140 34 1 4.5332 -0.2746 1.1403 35 1 3.3825 -2.8355 -0.0008 36 1 6.1966 -2.2715 0.4946 37 1 7.9016 -2.9488 0.5714 38 1 10.1876 -3.7631 1.8296 39 1 10.9177 -2.4762 -0.6685 40 1 10.5008 -6.0804 -0.6983 41 1 8.6592 -7.1265 -1.9471 42 1 4.5333 -0.2745 -1.1404 43 1 4.3954 -1.7574 -2.1141 44 1 1.9530 -1.8455 -1.6357 45 1 2.3900 -0.2893 -2.3934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:37:55 Heat of formation + Delta-G solvation = -132.112320 kcal Electronic energy + Delta-G solvation = -25761.633933 eV Core-core repulsion = 22009.589604 eV Total energy + Delta-G solvation = -3752.044329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.05191 -41.46506 -40.11280 -37.96150 -37.39364 -34.37866 -32.49070 -32.18428 -32.01740 -29.17651 -28.32756 -27.00025 -26.60363 -25.09011 -23.50112 -23.06131 -21.58267 -21.39539 -19.27020 -18.40425 -18.32188 -17.54727 -16.99537 -16.87865 -16.34927 -16.12112 -16.01469 -15.78256 -15.68065 -15.18167 -15.02103 -14.70389 -14.41635 -14.02302 -13.91226 -13.75407 -13.68886 -13.38718 -13.32131 -13.22197 -13.14528 -13.05494 -12.95819 -12.83612 -12.51443 -12.25827 -12.15153 -12.06456 -11.76466 -11.65967 -11.22104 -10.72207 -10.48016 -10.46169 -10.41025 -10.24126 -10.02324 -9.82775 -0.53253 -0.05998 1.19710 1.51140 1.54765 1.60504 1.84587 1.90969 1.97902 2.02053 2.06791 2.45852 2.69306 3.01605 3.36103 3.44204 3.56147 3.65601 3.76537 3.95210 4.04581 4.07617 4.20423 4.37978 4.45742 4.52878 4.61766 4.64098 4.76573 4.78229 4.81074 4.82339 4.84045 4.87591 4.89719 4.90794 4.92124 5.09868 5.15748 5.23364 5.26227 5.34355 5.47565 5.50519 5.56201 5.60724 5.71190 6.39089 6.72706 7.07254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.060 2.940 3 C -0.452 4.452 4 C -0.410 4.410 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.706 5.706 8 C 0.551 3.449 9 O -0.572 6.572 10 C -0.187 4.187 11 C -0.020 4.020 12 C -0.132 4.132 13 C -0.072 4.072 14 O -0.548 6.548 15 Si 0.972 3.028 16 H -0.249 1.249 17 H -0.276 1.276 18 H -0.254 1.254 19 C -0.065 4.065 20 C -0.154 4.154 21 C 0.131 3.869 22 F -0.138 7.138 23 C -0.115 4.115 24 C -0.424 4.424 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.391 0.609 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.059 0.941 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 3.784 4.077 7.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.252 2.748 3 C -0.560 4.560 4 C -0.496 4.496 5 C -0.150 4.150 6 C 0.031 3.969 7 N -0.358 5.358 8 C 0.339 3.661 9 O -0.453 6.453 10 C -0.191 4.191 11 C -0.039 4.039 12 C -0.133 4.133 13 C -0.182 4.182 14 O -0.355 6.355 15 Si 0.797 3.203 16 H -0.173 1.173 17 H -0.201 1.201 18 H -0.178 1.178 19 C -0.083 4.083 20 C -0.172 4.172 21 C 0.111 3.889 22 F -0.116 7.116 23 C -0.154 4.154 24 C -0.508 4.508 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.240 0.760 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.050 3.065 4.110 7.196 hybrid contribution -0.498 -0.409 -0.935 1.136 sum 4.552 2.656 3.175 6.152 Atomic orbital electron populations 1.26296 1.22221 1.04153 1.04546 0.78632 0.65112 0.66222 0.64835 1.26146 1.06814 1.18354 1.04661 1.26295 0.99192 1.08554 1.15583 1.21478 0.98018 1.00421 0.95125 1.21146 0.83764 0.95585 0.96379 1.45941 1.14218 1.24435 1.51195 1.18348 0.87540 0.81144 0.79049 1.90838 1.45374 1.64513 1.44533 1.20124 0.95500 0.97868 1.05626 1.21237 0.89816 0.98750 0.94089 1.20518 0.96285 0.96257 1.00236 1.24970 1.01829 0.89912 1.01521 1.86510 1.91733 1.25404 1.31833 0.85351 0.75970 0.77984 0.81038 1.17284 1.20135 1.17757 1.21384 0.99369 0.94234 0.93295 1.21330 0.90218 1.02794 1.02877 1.18199 0.85747 0.92186 0.92812 1.91555 1.59610 1.83547 1.76892 1.21557 0.97408 1.00062 0.96345 1.26576 0.99531 1.08069 1.16589 0.90748 0.91457 0.91832 0.90557 0.91452 0.90641 0.91019 0.88622 0.90505 0.88817 0.91663 0.74632 0.81726 0.84464 0.75977 0.82758 0.81938 0.89466 0.94655 0.92200 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.86 8.65 113.37 0.98 1.84 16 2 Si 1.06 -5.34 11.60 68.60 0.80 -4.54 16 3 C -0.45 2.28 8.65 113.37 0.98 3.26 16 4 C -0.41 1.92 4.98 72.22 0.36 2.28 16 5 C -0.11 0.52 5.05 30.68 0.15 0.68 16 6 C 0.14 0.20 2.03 44.67 0.09 0.29 16 7 N -0.71 -0.73 5.00 -447.06 -2.23 -2.96 16 8 C 0.55 4.83 7.52 86.74 0.65 5.48 16 9 O -0.57 -10.65 15.01 -3.95 -0.06 -10.71 16 10 C -0.19 -0.82 5.88 -20.05 -0.12 -0.94 16 11 C -0.02 0.07 9.09 22.52 0.20 0.27 16 12 C -0.13 0.67 5.38 -19.90 -0.11 0.56 16 13 C -0.07 0.56 2.82 71.24 0.20 0.76 16 14 O -0.55 3.61 12.76 -148.98 -1.90 1.70 16 15 Si 0.97 -6.43 25.06 68.60 1.72 -4.71 16 16 H -0.25 1.62 7.11 99.48 0.71 2.33 16 17 H -0.28 0.56 7.11 99.48 0.71 1.27 16 18 H -0.25 1.42 7.11 99.48 0.71 2.13 16 19 C -0.06 0.28 8.66 22.31 0.19 0.47 16 20 C -0.15 0.03 10.01 22.28 0.22 0.25 16 21 C 0.13 0.89 7.29 22.67 0.17 1.05 16 22 F -0.14 -1.92 15.55 44.97 0.70 -1.22 16 23 C -0.12 -0.24 5.18 30.68 0.16 -0.08 16 24 C -0.42 -0.41 4.98 72.22 0.36 -0.05 16 25 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 26 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 27 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 28 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 31 H 0.07 -0.19 7.99 -2.39 -0.02 -0.21 16 32 H 0.10 -0.66 7.99 -2.39 -0.02 -0.68 16 33 H 0.08 -0.40 8.13 -2.39 -0.02 -0.42 16 34 H 0.09 -0.81 7.69 -2.38 -0.02 -0.83 16 35 H 0.07 0.46 7.34 -2.39 -0.02 0.44 16 36 H 0.42 -2.56 6.62 -92.71 -0.61 -3.17 16 37 H 0.17 -1.43 6.40 -2.91 -0.02 -1.45 16 38 H 0.14 -1.43 7.96 -2.39 -0.02 -1.45 16 39 H 0.39 -4.78 8.70 -74.05 -0.64 -5.42 16 40 H 0.16 -1.30 4.86 -2.91 -0.01 -1.31 16 41 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 42 H 0.09 -0.23 7.69 -2.38 -0.02 -0.25 16 43 H 0.03 0.30 7.92 -2.39 -0.02 0.28 16 44 H 0.06 0.27 7.99 -2.39 -0.02 0.25 16 45 H 0.08 0.04 7.99 -2.38 -0.02 0.02 16 Total: 0.00 -21.08 363.59 4.02 -17.06 By element: Atomic # 1 Polarization: -11.24 SS G_CDS: 0.51 Total: -10.73 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 4.50 Total: 16.12 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -2.23 Total: -2.96 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -1.96 Total: -9.01 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.70 Total: -1.22 kcal Atomic # 14 Polarization: -11.77 SS G_CDS: 2.51 Total: -9.25 kcal Total: -21.08 4.02 -17.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.057 kcal (2) G-P(sol) polarization free energy of solvation -21.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds