Wall clock time and date at job start Sun Mar 7 2021 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86297 * 110.00352 * 2 1 4 4 C 1.87382 * 109.94668 * 121.21886 * 2 1 3 5 5 C 1.53717 * 107.28219 * 164.90369 * 4 2 1 6 6 C 1.52528 * 109.63927 * 300.87244 * 5 4 2 7 7 N 1.46499 * 109.04114 * 197.54953 * 6 5 4 8 8 C 1.34771 * 120.00102 * 155.00057 * 7 6 5 9 9 O 1.21578 * 119.99991 * 0.02562 * 8 7 6 10 10 C 1.47699 * 120.00370 * 180.02562 * 8 7 6 11 11 C 1.39616 * 120.15127 * 359.97438 * 10 8 7 12 12 C 1.38114 * 119.84635 * 180.02562 * 11 10 8 13 13 F 1.35101 * 119.91209 * 180.02562 * 12 11 10 14 14 C 1.38608 * 120.16995 * 359.97438 * 12 11 10 15 15 C 1.50699 * 119.84311 * 180.02562 * 14 12 11 16 16 O 1.42907 * 109.46921 * 74.98280 * 15 14 12 17 17 Si 1.86293 * 109.47348 * 314.98425 * 15 14 12 18 18 H 1.48497 * 109.47309 * 59.99800 * 17 15 14 19 19 H 1.48498 * 109.47349 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47016 * 299.99980 * 17 15 14 21 21 C 1.38233 * 120.31418 * 0.02562 * 14 12 11 22 22 C 1.38275 * 120.14337 * 359.97438 * 21 14 12 23 23 F 1.35100 * 120.07937 * 180.02562 * 22 21 14 24 24 C 1.52523 * 111.65251 * 76.99616 * 6 5 4 25 25 C 1.53714 * 109.63944 * 283.00283 * 24 6 5 26 26 H 1.08999 * 109.47219 * 298.78400 * 1 2 3 27 27 H 1.09003 * 109.47066 * 58.78076 * 1 2 3 28 28 H 1.08998 * 109.47307 * 178.77685 * 1 2 3 29 29 H 1.09004 * 109.47756 * 181.21965 * 3 2 1 30 30 H 1.09000 * 109.47457 * 301.22073 * 3 2 1 31 31 H 1.08999 * 109.47171 * 61.21956 * 3 2 1 32 32 H 1.09004 * 109.88870 * 45.45857 * 4 2 1 33 33 H 1.09001 * 109.95811 * 284.38134 * 4 2 1 34 34 H 1.09003 * 109.44066 * 180.82435 * 5 4 2 35 35 H 1.08996 * 109.44181 * 60.93053 * 5 4 2 36 36 H 1.08989 * 109.04730 * 316.50449 * 6 5 4 37 37 H 0.97007 * 120.00044 * 335.00861 * 7 6 5 38 38 H 1.07996 * 120.07542 * 359.97438 * 11 10 8 39 39 H 1.08998 * 109.46815 * 194.97980 * 15 14 12 40 40 H 0.96698 * 113.99724 * 300.00094 * 16 15 14 41 41 H 1.07998 * 119.92846 * 180.27338 * 21 14 12 42 42 H 1.09002 * 109.44420 * 43.05788 * 24 6 5 43 43 H 1.09003 * 109.44252 * 162.95737 * 24 6 5 44 44 H 1.08998 * 109.89445 * 299.68304 * 25 24 6 45 45 H 1.09000 * 109.89450 * 178.56690 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7506 0.0000 4 6 2.5022 -0.9130 1.5064 5 6 3.9901 -1.2118 1.2619 6 6 4.1431 -2.0548 -0.0001 7 7 5.4684 -2.6790 -0.0001 8 6 5.6761 -3.8196 -0.6873 9 8 4.7636 -4.3302 -1.3076 10 6 7.0121 -4.4493 -0.6869 11 6 8.0623 -3.8654 0.0239 12 6 9.3092 -4.4594 0.0195 13 9 10.3264 -3.8958 0.7073 14 6 9.5194 -5.6327 -0.6878 15 6 10.8828 -6.2748 -0.6871 16 8 11.1070 -6.9152 0.5707 17 14 12.1840 -4.9699 -0.9602 18 1 12.1108 -3.9624 0.1282 19 1 13.5274 -5.6027 -0.9601 20 1 11.9510 -4.3044 -2.2672 21 6 8.4844 -6.2167 -1.3940 22 6 7.2309 -5.6331 -1.3985 23 9 6.2201 -6.2052 -2.0886 24 6 3.9901 -1.2118 -1.2619 25 6 2.5022 -0.9130 -1.5064 26 1 -0.3633 0.4948 0.9007 27 1 -0.3633 0.5327 -0.8789 28 1 -0.3634 -1.0274 -0.0219 29 1 3.5900 1.7407 -0.0219 30 1 2.1240 2.2743 -0.8788 31 1 2.1596 2.2612 0.9007 32 1 1.9529 -1.8455 1.6355 33 1 2.3899 -0.2905 2.3941 34 1 4.3953 -1.7575 2.1140 35 1 4.5332 -0.2746 1.1403 36 1 3.3825 -2.8354 -0.0007 37 1 6.1965 -2.2715 0.4947 38 1 7.9003 -2.9510 0.5752 39 1 10.9365 -7.0143 -1.4860 40 1 11.0735 -6.3157 1.3287 41 1 8.6540 -7.1333 -1.9393 42 1 4.5332 -0.2746 -1.1403 43 1 4.3953 -1.7574 -2.1141 44 1 1.9530 -1.8455 -1.6357 45 1 2.3900 -0.2893 -2.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:48:58 Heat of formation + Delta-G solvation = -164.878895 kcal Electronic energy + Delta-G solvation = -28161.259902 eV Core-core repulsion = 23938.340732 eV Total energy + Delta-G solvation = -4222.919170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.47559 -50.11994 -41.46162 -40.00046 -38.02034 -37.58725 -34.47054 -32.84435 -32.01377 -31.37115 -29.20371 -28.33273 -28.11280 -26.34759 -24.53362 -23.61636 -23.40522 -21.83582 -21.59265 -19.54326 -19.14272 -18.57052 -17.92937 -17.62897 -17.23382 -16.99795 -16.75024 -16.22875 -16.07506 -15.97671 -15.84528 -15.58022 -15.09915 -15.01156 -14.61566 -14.53332 -14.03239 -14.01347 -13.90888 -13.75161 -13.41048 -13.37196 -13.28019 -13.15454 -13.05687 -13.04618 -12.94126 -12.52095 -12.47670 -12.18366 -12.14602 -11.75781 -11.42496 -11.14394 -10.79508 -10.72244 -10.42935 -10.41118 -10.27456 -10.04197 -9.81052 -0.81470 -0.30345 1.05353 1.37785 1.47295 1.54482 1.83919 1.85379 1.93389 2.00133 2.05550 2.25632 2.69300 2.78258 2.84304 3.12049 3.29766 3.49034 3.54417 3.75770 3.82171 4.03968 4.18222 4.23282 4.31378 4.36683 4.38380 4.53524 4.58984 4.66970 4.71009 4.79850 4.81921 4.82687 4.84331 4.86719 4.89179 4.91616 5.16517 5.23299 5.26238 5.32077 5.38569 5.48190 5.50438 5.60667 5.70829 6.33836 6.53423 7.01543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.060 2.940 3 C -0.453 4.453 4 C -0.410 4.410 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.705 5.705 8 C 0.554 3.446 9 O -0.563 6.563 10 C -0.155 4.155 11 C -0.073 4.073 12 C 0.075 3.925 13 F -0.117 7.117 14 C -0.093 4.093 15 C -0.082 4.082 16 O -0.542 6.542 17 Si 0.966 3.034 18 H -0.228 1.228 19 H -0.271 1.271 20 H -0.263 1.263 21 C -0.109 4.109 22 C 0.131 3.869 23 F -0.128 7.128 24 C -0.116 4.116 25 C -0.424 4.424 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.184 0.816 39 H 0.143 0.857 40 H 0.389 0.611 41 H 0.176 0.824 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 5.043 3.797 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.252 2.748 3 C -0.561 4.561 4 C -0.496 4.496 5 C -0.151 4.151 6 C 0.031 3.969 7 N -0.357 5.357 8 C 0.341 3.659 9 O -0.443 6.443 10 C -0.159 4.159 11 C -0.092 4.092 12 C 0.056 3.944 13 F -0.096 7.096 14 C -0.094 4.094 15 C -0.192 4.192 16 O -0.349 6.349 17 Si 0.789 3.211 18 H -0.151 1.151 19 H -0.196 1.196 20 H -0.187 1.187 21 C -0.128 4.128 22 C 0.111 3.889 23 F -0.107 7.107 24 C -0.155 4.155 25 C -0.507 4.507 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.201 0.799 39 H 0.160 0.840 40 H 0.238 0.762 41 H 0.193 0.807 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.955 4.804 2.859 6.323 hybrid contribution -0.412 -0.151 0.100 0.451 sum 2.542 4.653 2.959 6.072 Atomic orbital electron populations 1.26313 1.22377 1.04155 1.04483 0.78628 0.65023 0.66176 0.64975 1.26162 1.06826 1.18474 1.04594 1.26289 0.99261 1.08573 1.15494 1.21486 0.97982 1.00460 0.95180 1.21168 0.83662 0.95682 0.96376 1.45941 1.14355 1.24326 1.51067 1.18145 0.87146 0.81256 0.79345 1.90866 1.44959 1.64284 1.44170 1.19883 0.95160 0.97165 1.03705 1.21345 0.89268 1.00991 0.97588 1.17425 0.85874 0.93847 0.97297 1.91626 1.56204 1.84371 1.77353 1.20529 0.98260 0.93982 0.96675 1.25115 0.96055 1.06721 0.91260 1.86572 1.94022 1.38810 1.15456 0.85699 0.76939 0.77088 0.81410 1.15059 1.19580 1.18678 1.21103 0.88877 1.01897 1.00897 1.18039 0.85730 0.92072 0.93074 1.91590 1.59123 1.83501 1.76441 1.21568 0.97387 1.00125 0.96398 1.26552 0.99588 1.08109 1.16454 0.90843 0.91519 0.91796 0.90527 0.91520 0.90738 0.90939 0.88711 0.90402 0.88795 0.91365 0.74570 0.79889 0.83955 0.76160 0.80677 0.89451 0.94375 0.92058 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.19 8.65 113.37 0.98 2.17 16 2 Si 1.06 -6.44 11.60 68.60 0.80 -5.64 16 3 C -0.45 2.64 8.65 113.37 0.98 3.62 16 4 C -0.41 2.42 4.98 72.22 0.36 2.78 16 5 C -0.11 0.72 5.05 30.68 0.15 0.87 16 6 C 0.13 -0.08 2.03 44.68 0.09 0.01 16 7 N -0.70 1.04 5.00 -447.06 -2.23 -1.19 16 8 C 0.55 3.33 7.52 86.74 0.65 3.98 16 9 O -0.56 -8.84 15.01 -3.96 -0.06 -8.90 16 10 C -0.15 -0.31 5.88 -20.06 -0.12 -0.43 16 11 C -0.07 0.34 9.52 22.57 0.21 0.55 16 12 C 0.08 -0.28 6.60 22.33 0.15 -0.13 16 13 F -0.12 0.47 12.55 44.97 0.56 1.04 16 14 C -0.09 0.27 4.79 -19.78 -0.09 0.18 16 15 C -0.08 0.35 2.80 71.24 0.20 0.55 16 16 O -0.54 1.24 12.88 -148.98 -1.92 -0.67 16 17 Si 0.97 -2.84 26.08 68.60 1.79 -1.05 16 18 H -0.23 0.65 5.28 99.48 0.53 1.18 16 19 H -0.27 -0.16 7.11 99.48 0.71 0.54 16 20 H -0.26 0.20 7.11 99.48 0.71 0.91 16 21 C -0.11 0.13 9.63 22.28 0.21 0.34 16 22 C 0.13 0.58 7.28 22.67 0.17 0.74 16 23 F -0.13 -1.41 15.55 44.97 0.70 -0.72 16 24 C -0.12 -0.03 5.18 30.68 0.16 0.13 16 25 C -0.42 0.21 4.98 72.22 0.36 0.57 16 26 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.08 -0.53 7.96 -2.38 -0.02 -0.55 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 32 H 0.07 -0.29 7.99 -2.39 -0.02 -0.31 16 33 H 0.09 -0.75 7.99 -2.39 -0.02 -0.77 16 34 H 0.08 -0.55 8.13 -2.39 -0.02 -0.57 16 35 H 0.09 -0.97 7.69 -2.39 -0.02 -0.99 16 36 H 0.07 0.33 7.34 -2.39 -0.02 0.31 16 37 H 0.42 -3.77 6.62 -92.70 -0.61 -4.38 16 38 H 0.18 -2.19 6.40 -2.91 -0.02 -2.21 16 39 H 0.14 -1.06 7.76 -2.39 -0.02 -1.08 16 40 H 0.39 -3.11 8.39 -74.06 -0.62 -3.73 16 41 H 0.18 -0.92 7.99 -2.91 -0.02 -0.95 16 42 H 0.09 -0.39 7.69 -2.39 -0.02 -0.40 16 43 H 0.04 0.24 7.92 -2.39 -0.02 0.22 16 44 H 0.06 0.18 7.99 -2.39 -0.02 0.16 16 45 H 0.08 -0.05 7.99 -2.39 -0.02 -0.07 16 Total: 0.00 -19.67 367.37 4.46 -15.21 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: 0.36 Total: -14.00 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 4.47 Total: 15.93 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -2.23 Total: -1.19 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.98 Total: -9.57 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 1.26 Total: 0.32 kcal Atomic # 14 Polarization: -9.28 SS G_CDS: 2.58 Total: -6.69 kcal Total: -19.67 4.46 -15.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.670 kcal (2) G-P(sol) polarization free energy of solvation -19.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds