Wall clock time and date at job start Sun Mar 7 2021 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.93218 * 2 1 4 4 C 1.87383 * 109.94703 * 121.17488 * 2 1 3 5 5 C 1.53711 * 107.28118 * 164.90161 * 4 2 1 6 6 C 1.52523 * 109.64597 * 300.87389 * 5 4 2 7 7 N 1.46496 * 109.04398 * 197.54837 * 6 5 4 8 8 C 1.34777 * 119.99614 * 154.99604 * 7 6 5 9 9 O 1.21566 * 120.00100 * 0.02562 * 8 7 6 10 10 C 1.47726 * 120.00130 * 180.02562 * 8 7 6 11 11 C 1.39636 * 120.11365 * 359.97438 * 10 8 7 12 12 C 1.37863 * 119.87934 * 179.97438 * 11 10 8 13 13 C 1.38637 * 120.11540 * 0.02562 * 12 11 10 14 14 F 1.35104 * 119.87742 * 179.97438 * 13 12 11 15 15 C 1.38680 * 120.24049 * 0.02562 * 13 12 11 16 16 C 1.50699 * 119.93799 * 179.97438 * 15 13 12 17 17 O 1.42898 * 109.47640 * 74.99905 * 16 15 13 18 18 Si 1.86302 * 109.46940 * 314.99183 * 16 15 13 19 19 H 1.48506 * 109.47086 * 60.00672 * 18 16 15 20 20 H 1.48505 * 109.46959 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47632 * 300.00578 * 18 16 15 22 22 C 1.37812 * 120.11920 * 359.69392 * 15 13 12 23 23 C 1.52523 * 111.65300 * 76.98791 * 6 5 4 24 24 C 1.53707 * 109.64586 * 283.01161 * 23 6 5 25 25 H 1.09001 * 109.47261 * 298.82584 * 1 2 3 26 26 H 1.08993 * 109.47470 * 58.82635 * 1 2 3 27 27 H 1.08999 * 109.47396 * 178.82966 * 1 2 3 28 28 H 1.09001 * 109.46857 * 181.17713 * 3 2 1 29 29 H 1.09000 * 109.46693 * 301.17285 * 3 2 1 30 30 H 1.08996 * 109.47343 * 61.17504 * 3 2 1 31 31 H 1.08992 * 109.89486 * 45.45962 * 4 2 1 32 32 H 1.09000 * 109.89203 * 284.34438 * 4 2 1 33 33 H 1.09005 * 109.44170 * 180.81983 * 5 4 2 34 34 H 1.09003 * 109.44259 * 60.92860 * 5 4 2 35 35 H 1.08998 * 109.03848 * 316.50381 * 6 5 4 36 36 H 0.96996 * 120.00499 * 335.00181 * 7 6 5 37 37 H 1.07993 * 120.06454 * 0.02562 * 11 10 8 38 38 H 1.07994 * 119.93975 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46658 * 195.00038 * 16 15 13 40 40 H 0.96706 * 113.99246 * 299.99798 * 17 16 15 41 41 H 1.08002 * 120.06276 * 180.27729 * 22 15 13 42 42 H 1.09002 * 109.44415 * 43.06693 * 23 6 5 43 43 H 1.09000 * 109.44280 * 162.95908 * 23 6 5 44 44 H 1.09005 * 109.89740 * 299.68427 * 24 23 6 45 45 H 1.09003 * 109.89827 * 178.56872 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4981 1.7514 0.0000 4 6 2.5022 -0.9118 1.5070 5 6 3.9901 -1.2108 1.2628 6 6 4.1431 -2.0547 0.0015 7 7 5.4685 -2.6789 0.0020 8 6 5.6760 -3.8201 -0.6844 9 8 4.7636 -4.3312 -1.3042 10 6 7.0123 -4.4500 -0.6835 11 6 8.0622 -3.8647 0.0271 12 6 9.3071 -4.4569 0.0250 13 6 9.5177 -5.6311 -0.6814 14 9 10.7398 -6.2070 -0.6806 15 6 8.4788 -6.2159 -1.3898 16 6 8.7154 -7.4919 -2.1558 17 8 8.7957 -8.5880 -1.2425 18 14 10.3116 -7.3580 -3.1072 19 1 11.4342 -7.1331 -2.1615 20 1 10.5445 -8.6152 -3.8626 21 1 10.2281 -6.2190 -4.0564 22 6 7.2289 -5.6354 -1.3897 23 6 3.9900 -1.2128 -1.2610 24 6 2.5022 -0.9141 -1.5057 25 1 -0.3634 0.4955 0.9003 26 1 -0.3634 0.5319 -0.8792 27 1 -0.3634 -1.0274 -0.0210 28 1 3.5879 1.7426 -0.0211 29 1 2.1218 2.2742 -0.8793 30 1 2.1562 2.2619 0.9003 31 1 1.9530 -1.8442 1.6370 32 1 2.3901 -0.2875 2.3935 33 1 4.3954 -1.7558 2.1154 34 1 4.5332 -0.2737 1.1404 35 1 3.3825 -2.8354 0.0016 36 1 6.1966 -2.2710 0.4963 37 1 7.8991 -2.9504 0.5781 38 1 10.1199 -4.0050 0.5740 39 1 7.8914 -7.6570 -2.8500 40 1 9.5086 -8.5081 -0.5940 41 1 6.4193 -6.0941 -1.9380 42 1 4.5331 -0.2755 -1.1402 43 1 4.3952 -1.7590 -2.1128 44 1 1.9528 -1.8468 -1.6342 45 1 2.3899 -0.2912 -2.3931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:52:47 Heat of formation + Delta-G solvation = -130.190403 kcal Electronic energy + Delta-G solvation = -25475.581050 eV Core-core repulsion = 21723.620061 eV Total energy + Delta-G solvation = -3751.960989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.46914 -41.46218 -39.88098 -37.94758 -37.56335 -34.27953 -32.80579 -32.13270 -31.84687 -29.33048 -28.50282 -27.21660 -26.78504 -24.52404 -23.64457 -23.48980 -21.60323 -21.30797 -19.23638 -18.90239 -18.10043 -17.83729 -17.23036 -16.96831 -16.39658 -16.21760 -15.91121 -15.55633 -15.39328 -15.15021 -15.08242 -14.75485 -14.43504 -14.12713 -14.09580 -14.05544 -13.87547 -13.52042 -13.41949 -13.37389 -13.30708 -13.18100 -13.04315 -12.91270 -12.60145 -12.37408 -12.22511 -12.10242 -11.84263 -11.24821 -11.07926 -10.87427 -10.67602 -10.54412 -10.35290 -10.18800 -10.07953 -9.85678 -0.55417 -0.07094 1.09266 1.46714 1.50314 1.63959 1.67819 1.79269 1.82656 1.94627 2.05196 2.54688 2.55562 2.90351 3.22296 3.45487 3.50040 3.53231 3.69069 3.81880 3.97963 4.04463 4.13071 4.28614 4.29600 4.42535 4.52730 4.55516 4.67156 4.68005 4.69343 4.70931 4.72063 4.73391 4.77829 4.82058 4.93050 5.00464 5.03664 5.15029 5.22844 5.27550 5.37468 5.41869 5.49474 5.50994 5.55683 6.41029 6.42308 7.14975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.990 3.010 3 C -0.445 4.445 4 C -0.403 4.403 5 C -0.116 4.116 6 C 0.136 3.864 7 N -0.723 5.723 8 C 0.560 3.440 9 O -0.528 6.528 10 C -0.144 4.144 11 C -0.056 4.056 12 C -0.153 4.153 13 C 0.116 3.884 14 F -0.123 7.123 15 C -0.157 4.157 16 C -0.080 4.080 17 O -0.532 6.532 18 Si 0.937 3.063 19 H -0.229 1.229 20 H -0.252 1.252 21 H -0.251 1.251 22 C -0.010 4.010 23 C -0.117 4.117 24 C -0.403 4.403 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.376 0.624 41 H 0.151 0.849 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 4.458 2.656 5.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.187 2.813 3 C -0.553 4.553 4 C -0.489 4.489 5 C -0.154 4.154 6 C 0.032 3.968 7 N -0.375 5.375 8 C 0.347 3.653 9 O -0.405 6.405 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.172 4.172 13 C 0.097 3.903 14 F -0.102 7.102 15 C -0.158 4.158 16 C -0.190 4.190 17 O -0.337 6.337 18 Si 0.757 3.243 19 H -0.151 1.151 20 H -0.175 1.175 21 H -0.174 1.174 22 C -0.029 4.029 23 C -0.155 4.155 24 C -0.490 4.490 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.234 0.766 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.223 0.777 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.953 3.925 1.407 4.277 hybrid contribution 0.635 0.372 0.869 1.138 sum 1.588 4.297 2.276 5.116 Atomic orbital electron populations 1.26073 1.20474 1.04573 1.04444 0.79671 0.67119 0.67322 0.67218 1.26087 1.06239 1.18503 1.04477 1.26203 0.99344 1.08564 1.14764 1.21463 0.97565 0.99855 0.96525 1.21102 0.84504 0.96051 0.95112 1.46057 1.13588 1.25532 1.52311 1.18104 0.87607 0.80434 0.79107 1.90818 1.43915 1.63142 1.42606 1.20055 0.94136 0.97882 1.02659 1.21199 0.91416 0.98831 0.96016 1.21109 0.99021 0.95394 1.01630 1.17920 0.80256 0.93365 0.98774 1.91596 1.40804 1.83457 1.94295 1.20338 0.93512 0.99859 1.02077 1.24988 1.13355 0.84240 0.96420 1.86571 1.57538 1.41839 1.47711 0.86127 0.77121 0.81704 0.79349 1.15142 1.17544 1.17442 1.21060 0.95490 0.92151 0.94181 1.21561 0.96849 0.99620 0.97487 1.26238 0.99879 1.08415 1.14420 0.91235 0.91194 0.91122 0.91274 0.91198 0.91226 0.90217 0.90080 0.91106 0.91090 0.88958 0.76603 0.84370 0.83503 0.85764 0.77701 0.83140 0.91672 0.91352 0.90260 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.70 8.65 101.05 0.87 1.57 16 2 Si 0.99 -2.94 11.59 -169.99 -1.97 -4.92 16 3 C -0.45 0.98 8.65 101.05 0.87 1.85 16 4 C -0.40 1.01 4.98 37.53 0.19 1.20 16 5 C -0.12 0.29 5.05 -26.61 -0.13 0.16 16 6 C 0.14 -0.10 2.03 -68.42 -0.14 -0.24 16 7 N -0.72 0.74 5.00 -55.27 -0.28 0.46 16 8 C 0.56 0.98 7.52 -12.38 -0.09 0.89 16 9 O -0.53 -2.90 16.01 5.31 0.08 -2.81 16 10 C -0.14 -0.04 5.87 -104.96 -0.62 -0.66 16 11 C -0.06 0.12 9.54 -39.20 -0.37 -0.26 16 12 C -0.15 0.26 10.01 -39.57 -0.40 -0.14 16 13 C 0.12 -0.01 6.63 -39.27 -0.26 -0.27 16 14 F -0.12 -0.05 12.58 2.25 0.03 -0.02 16 15 C -0.16 -0.06 4.78 -104.62 -0.50 -0.56 16 16 C -0.08 -0.01 2.80 36.01 0.10 0.09 16 17 O -0.53 -0.54 12.88 -35.23 -0.45 -1.00 16 18 Si 0.94 0.25 26.09 -169.99 -4.43 -4.18 16 19 H -0.23 -0.13 5.28 56.52 0.30 0.16 16 20 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 21 H -0.25 -0.29 7.11 56.52 0.40 0.12 16 22 C -0.01 -0.01 9.21 -39.20 -0.36 -0.37 16 23 C -0.12 0.06 5.18 -26.61 -0.14 -0.08 16 24 C -0.40 0.44 4.98 37.52 0.19 0.63 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.16 7.99 -51.93 -0.41 -0.58 16 32 H 0.08 -0.24 7.99 -51.93 -0.41 -0.65 16 33 H 0.07 -0.18 8.13 -51.93 -0.42 -0.60 16 34 H 0.07 -0.26 7.69 -51.93 -0.40 -0.66 16 35 H 0.09 0.11 7.34 -51.93 -0.38 -0.27 16 36 H 0.40 -1.57 6.61 -40.82 -0.27 -1.84 16 37 H 0.14 -0.73 6.40 -52.49 -0.34 -1.06 16 38 H 0.15 -0.55 8.06 -52.49 -0.42 -0.97 16 39 H 0.12 -0.12 7.77 -51.93 -0.40 -0.52 16 40 H 0.38 -0.69 8.41 45.56 0.38 -0.31 16 41 H 0.15 0.15 7.59 -52.49 -0.40 -0.25 16 42 H 0.06 -0.12 7.69 -51.93 -0.40 -0.52 16 43 H 0.07 0.12 7.92 -51.93 -0.41 -0.30 16 44 H 0.08 -0.02 7.99 -51.93 -0.41 -0.43 16 45 H 0.08 -0.09 7.99 -51.93 -0.41 -0.51 16 LS Contribution 362.88 15.07 5.47 5.47 Total: 0.00 -6.73 362.88 -8.84 -15.57 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -6.50 Total: -12.41 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.79 Total: 3.83 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -0.28 Total: 0.46 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.37 Total: -3.81 kcal Atomic # 9 Polarization: -0.05 SS G_CDS: 0.03 Total: -0.02 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: -6.41 Total: -9.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -6.73 -8.84 -15.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.620 kcal (2) G-P(sol) polarization free energy of solvation -6.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds