Wall clock time and date at job start Sun Mar 7 2021 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.93218 * 2 1 4 4 C 1.87383 * 109.94703 * 121.17488 * 2 1 3 5 5 C 1.53711 * 107.28118 * 164.90161 * 4 2 1 6 6 C 1.52523 * 109.64597 * 300.87389 * 5 4 2 7 7 N 1.46496 * 109.04398 * 197.54837 * 6 5 4 8 8 C 1.34777 * 119.99614 * 154.99604 * 7 6 5 9 9 O 1.21566 * 120.00100 * 0.02562 * 8 7 6 10 10 C 1.47726 * 120.00130 * 180.02562 * 8 7 6 11 11 C 1.39636 * 120.11365 * 359.97438 * 10 8 7 12 12 C 1.37863 * 119.87934 * 179.97438 * 11 10 8 13 13 C 1.38637 * 120.11540 * 0.02562 * 12 11 10 14 14 F 1.35104 * 119.87742 * 179.97438 * 13 12 11 15 15 C 1.38680 * 120.24049 * 0.02562 * 13 12 11 16 16 C 1.50699 * 119.93799 * 179.97438 * 15 13 12 17 17 O 1.42898 * 109.47640 * 74.99905 * 16 15 13 18 18 Si 1.86302 * 109.46940 * 314.99183 * 16 15 13 19 19 H 1.48506 * 109.47086 * 60.00672 * 18 16 15 20 20 H 1.48505 * 109.46959 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47632 * 300.00578 * 18 16 15 22 22 C 1.37812 * 120.11920 * 359.69392 * 15 13 12 23 23 C 1.52523 * 111.65300 * 76.98791 * 6 5 4 24 24 C 1.53707 * 109.64586 * 283.01161 * 23 6 5 25 25 H 1.09001 * 109.47261 * 298.82584 * 1 2 3 26 26 H 1.08993 * 109.47470 * 58.82635 * 1 2 3 27 27 H 1.08999 * 109.47396 * 178.82966 * 1 2 3 28 28 H 1.09001 * 109.46857 * 181.17713 * 3 2 1 29 29 H 1.09000 * 109.46693 * 301.17285 * 3 2 1 30 30 H 1.08996 * 109.47343 * 61.17504 * 3 2 1 31 31 H 1.08992 * 109.89486 * 45.45962 * 4 2 1 32 32 H 1.09000 * 109.89203 * 284.34438 * 4 2 1 33 33 H 1.09005 * 109.44170 * 180.81983 * 5 4 2 34 34 H 1.09003 * 109.44259 * 60.92860 * 5 4 2 35 35 H 1.08998 * 109.03848 * 316.50381 * 6 5 4 36 36 H 0.96996 * 120.00499 * 335.00181 * 7 6 5 37 37 H 1.07993 * 120.06454 * 0.02562 * 11 10 8 38 38 H 1.07994 * 119.93975 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46658 * 195.00038 * 16 15 13 40 40 H 0.96706 * 113.99246 * 299.99798 * 17 16 15 41 41 H 1.08002 * 120.06276 * 180.27729 * 22 15 13 42 42 H 1.09002 * 109.44415 * 43.06693 * 23 6 5 43 43 H 1.09000 * 109.44280 * 162.95908 * 23 6 5 44 44 H 1.09005 * 109.89740 * 299.68427 * 24 23 6 45 45 H 1.09003 * 109.89827 * 178.56872 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4981 1.7514 0.0000 4 6 2.5022 -0.9118 1.5070 5 6 3.9901 -1.2108 1.2628 6 6 4.1431 -2.0547 0.0015 7 7 5.4685 -2.6789 0.0020 8 6 5.6760 -3.8201 -0.6844 9 8 4.7636 -4.3312 -1.3042 10 6 7.0123 -4.4500 -0.6835 11 6 8.0622 -3.8647 0.0271 12 6 9.3071 -4.4569 0.0250 13 6 9.5177 -5.6311 -0.6814 14 9 10.7398 -6.2070 -0.6806 15 6 8.4788 -6.2159 -1.3898 16 6 8.7154 -7.4919 -2.1558 17 8 8.7957 -8.5880 -1.2425 18 14 10.3116 -7.3580 -3.1072 19 1 11.4342 -7.1331 -2.1615 20 1 10.5445 -8.6152 -3.8626 21 1 10.2281 -6.2190 -4.0564 22 6 7.2289 -5.6354 -1.3897 23 6 3.9900 -1.2128 -1.2610 24 6 2.5022 -0.9141 -1.5057 25 1 -0.3634 0.4955 0.9003 26 1 -0.3634 0.5319 -0.8792 27 1 -0.3634 -1.0274 -0.0210 28 1 3.5879 1.7426 -0.0211 29 1 2.1218 2.2742 -0.8793 30 1 2.1562 2.2619 0.9003 31 1 1.9530 -1.8442 1.6370 32 1 2.3901 -0.2875 2.3935 33 1 4.3954 -1.7558 2.1154 34 1 4.5332 -0.2737 1.1404 35 1 3.3825 -2.8354 0.0016 36 1 6.1966 -2.2710 0.4963 37 1 7.8991 -2.9504 0.5781 38 1 10.1199 -4.0050 0.5740 39 1 7.8914 -7.6570 -2.8500 40 1 9.5086 -8.5081 -0.5940 41 1 6.4193 -6.0941 -1.9380 42 1 4.5331 -0.2755 -1.1402 43 1 4.3952 -1.7590 -2.1128 44 1 1.9528 -1.8468 -1.6342 45 1 2.3899 -0.2912 -2.3931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:52:46 Heat of formation + Delta-G solvation = -124.827329 kcal Electronic energy + Delta-G solvation = -25475.348489 eV Core-core repulsion = 21723.620061 eV Total energy + Delta-G solvation = -3751.728428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.45415 -41.50244 -39.87272 -37.95579 -37.60942 -34.30572 -32.75994 -31.99353 -31.81024 -29.16919 -28.31905 -27.18695 -26.73416 -24.50097 -23.57498 -23.39051 -21.54961 -21.33575 -19.20326 -18.89019 -18.09139 -17.86240 -17.22251 -16.98829 -16.36760 -16.20800 -15.94336 -15.55802 -15.37391 -15.09666 -15.01143 -14.74838 -14.46637 -14.05844 -14.00779 -13.90720 -13.71427 -13.43441 -13.32715 -13.27546 -13.14101 -13.05605 -12.93923 -12.88232 -12.49961 -12.40801 -12.15349 -12.12244 -11.72715 -11.28928 -11.20605 -10.71592 -10.67980 -10.40669 -10.33411 -10.14013 -10.03679 -9.81962 -0.53420 -0.00628 1.06349 1.41151 1.44089 1.59177 1.86731 1.87105 1.95391 2.04528 2.09676 2.54981 2.70789 2.95595 3.27299 3.53638 3.54990 3.60785 3.78868 3.95552 4.07097 4.09858 4.23728 4.34353 4.40704 4.56177 4.62774 4.66187 4.74730 4.81017 4.82677 4.85886 4.87926 4.88782 4.90069 4.92670 4.97823 5.07959 5.18970 5.26466 5.29247 5.38122 5.49957 5.52201 5.58640 5.62266 5.71977 6.46255 6.51915 7.13017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.060 2.940 3 C -0.453 4.453 4 C -0.410 4.410 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.708 5.708 8 C 0.557 3.443 9 O -0.577 6.577 10 C -0.155 4.155 11 C -0.041 4.041 12 C -0.147 4.147 13 C 0.108 3.892 14 F -0.127 7.127 15 C -0.164 4.164 16 C -0.082 4.082 17 O -0.547 6.547 18 Si 0.969 3.031 19 H -0.229 1.229 20 H -0.272 1.272 21 H -0.264 1.264 22 C -0.026 4.026 23 C -0.116 4.116 24 C -0.423 4.423 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.128 0.872 40 H 0.387 0.613 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 6.424 4.519 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.252 2.748 3 C -0.561 4.561 4 C -0.496 4.496 5 C -0.151 4.151 6 C 0.031 3.969 7 N -0.360 5.360 8 C 0.345 3.655 9 O -0.458 6.458 10 C -0.159 4.159 11 C -0.060 4.060 12 C -0.165 4.165 13 C 0.088 3.912 14 F -0.105 7.105 15 C -0.165 4.165 16 C -0.192 4.192 17 O -0.354 6.354 18 Si 0.792 3.208 19 H -0.152 1.152 20 H -0.197 1.197 21 H -0.188 1.188 22 C -0.045 4.045 23 C -0.154 4.154 24 C -0.507 4.507 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.193 0.807 38 H 0.192 0.808 39 H 0.145 0.855 40 H 0.235 0.765 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.151 5.907 3.286 7.094 hybrid contribution 0.246 -0.247 0.260 0.435 sum 2.397 5.661 3.547 7.097 Atomic orbital electron populations 1.26319 1.22448 1.04143 1.04450 0.78631 0.64970 0.66175 0.65058 1.26164 1.06825 1.18520 1.04563 1.26285 0.99380 1.08508 1.15474 1.21479 0.97862 1.00456 0.95298 1.21126 0.83959 0.95624 0.96204 1.45955 1.14134 1.24550 1.51327 1.18402 0.87678 0.80808 0.78645 1.90792 1.45496 1.64627 1.44850 1.20046 0.94172 0.97994 1.03668 1.21543 0.90257 0.99446 0.94743 1.21449 0.99838 0.94451 1.00806 1.18112 0.79915 0.94058 0.99105 1.91581 1.40919 1.83659 1.94352 1.20300 0.93580 0.99982 1.02663 1.25023 1.13510 0.84196 0.96427 1.86537 1.58310 1.42320 1.48208 0.85690 0.76925 0.79847 0.78362 1.15162 1.19726 1.18829 1.21040 0.95521 0.92962 0.94954 1.21562 0.97257 1.00122 0.96495 1.26540 0.99700 1.08099 1.16337 0.90893 0.91536 0.91797 0.90515 0.91538 0.90778 0.90972 0.88807 0.90468 0.88861 0.91498 0.74580 0.80723 0.80764 0.85457 0.76450 0.84458 0.89562 0.94286 0.92028 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.27 8.65 113.37 0.98 2.25 16 2 Si 1.06 -6.69 11.59 68.60 0.80 -5.89 16 3 C -0.45 2.72 8.65 113.37 0.98 3.71 16 4 C -0.41 2.50 4.98 72.22 0.36 2.86 16 5 C -0.11 0.75 5.05 30.68 0.15 0.91 16 6 C 0.13 -0.16 2.03 44.68 0.09 -0.07 16 7 N -0.71 1.62 5.00 -447.04 -2.23 -0.61 16 8 C 0.56 2.62 7.52 86.75 0.65 3.28 16 9 O -0.58 -8.05 16.01 -3.92 -0.06 -8.11 16 10 C -0.16 -0.16 5.87 -20.09 -0.12 -0.28 16 11 C -0.04 0.25 9.54 22.52 0.21 0.46 16 12 C -0.15 0.78 10.01 22.28 0.22 1.00 16 13 C 0.11 -0.06 6.63 22.47 0.15 0.08 16 14 F -0.13 -0.03 12.58 44.97 0.57 0.53 16 15 C -0.16 -0.27 4.78 -19.86 -0.09 -0.37 16 16 C -0.08 -0.12 2.80 71.24 0.20 0.08 16 17 O -0.55 -1.68 12.88 -148.98 -1.92 -3.60 16 18 Si 0.97 1.46 26.09 68.60 1.79 3.25 16 19 H -0.23 -0.31 5.28 99.48 0.53 0.22 16 20 H -0.27 -1.25 7.11 99.48 0.71 -0.54 16 21 H -0.26 -0.90 7.11 99.48 0.71 -0.19 16 22 C -0.03 -0.09 9.21 22.52 0.21 0.12 16 23 C -0.12 0.03 5.18 30.67 0.16 0.19 16 24 C -0.42 0.39 4.98 72.22 0.36 0.75 16 25 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 26 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 28 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 29 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 30 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.07 -0.30 7.99 -2.39 -0.02 -0.32 16 32 H 0.09 -0.75 7.99 -2.39 -0.02 -0.77 16 33 H 0.08 -0.56 8.13 -2.38 -0.02 -0.58 16 34 H 0.09 -0.99 7.69 -2.39 -0.02 -1.01 16 35 H 0.07 0.29 7.34 -2.39 -0.02 0.27 16 36 H 0.42 -4.11 6.61 -92.71 -0.61 -4.72 16 37 H 0.18 -2.45 6.40 -2.91 -0.02 -2.47 16 38 H 0.17 -1.88 8.06 -2.91 -0.02 -1.90 16 39 H 0.13 0.01 7.77 -2.39 -0.02 -0.01 16 40 H 0.39 -1.15 8.41 -74.05 -0.62 -1.77 16 41 H 0.14 0.73 7.59 -2.91 -0.02 0.71 16 42 H 0.09 -0.41 7.69 -2.39 -0.02 -0.43 16 43 H 0.04 0.22 7.92 -2.39 -0.02 0.20 16 44 H 0.06 0.15 7.99 -2.38 -0.02 0.13 16 45 H 0.08 -0.08 7.99 -2.39 -0.02 -0.10 16 Total: 0.00 -18.46 362.88 3.79 -14.67 By element: Atomic # 1 Polarization: -15.56 SS G_CDS: 0.34 Total: -15.22 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 4.52 Total: 14.98 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: -2.23 Total: -0.61 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.98 Total: -11.71 kcal Atomic # 9 Polarization: -0.03 SS G_CDS: 0.57 Total: 0.53 kcal Atomic # 14 Polarization: -5.23 SS G_CDS: 2.58 Total: -2.64 kcal Total: -18.46 3.79 -14.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.156 kcal (2) G-P(sol) polarization free energy of solvation -18.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds