Wall clock time and date at job start Sun Mar 7 2021 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86298 * 109.99619 * 2 1 4 4 C 1.87370 * 109.94822 * 121.21826 * 2 1 3 5 5 C 1.53709 * 107.28657 * 164.90733 * 4 2 1 6 6 C 1.52525 * 109.63922 * 300.87521 * 5 4 2 7 7 N 1.46503 * 109.04511 * 197.54758 * 6 5 4 8 8 C 1.34778 * 120.00009 * 154.72565 * 7 6 5 9 9 O 1.21279 * 120.00115 * 0.27257 * 8 7 6 10 10 C 1.50698 * 120.00097 * 180.27689 * 8 7 6 11 11 N 1.46492 * 109.47442 * 179.97438 * 10 8 7 12 12 C 1.35041 * 125.92866 * 124.99590 * 11 10 8 13 13 C 1.35087 * 107.98112 * 179.97438 * 12 11 10 14 14 C 1.50695 * 126.07937 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46842 * 105.16219 * 14 13 12 16 16 Si 1.86301 * 109.47204 * 345.16218 * 14 13 12 17 17 H 1.48501 * 109.46970 * 59.99872 * 16 14 13 18 18 H 1.48494 * 109.47193 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46992 * 299.99928 * 16 14 13 20 20 C 1.40853 * 107.84553 * 0.02562 * 13 12 11 21 21 C 1.48425 * 126.03607 * 179.97438 * 20 13 12 22 22 C 1.39316 * 120.11650 * 317.19700 * 21 20 13 23 23 C 1.38034 * 119.87411 * 179.67608 * 22 21 20 24 24 C 1.38314 * 120.11602 * 0.62275 * 23 22 21 25 25 C 1.38318 * 120.24428 * 359.67676 * 24 23 22 26 26 C 1.38022 * 120.11868 * 0.02562 * 25 24 23 27 27 N 1.31626 * 107.92414 * 359.75965 * 20 13 12 28 28 C 1.52523 * 111.65687 * 76.98870 * 6 5 4 29 29 C 1.53712 * 109.64124 * 283.00963 * 28 6 5 30 30 H 1.09001 * 109.47068 * 298.77852 * 1 2 3 31 31 H 1.09001 * 109.47073 * 58.78561 * 1 2 3 32 32 H 1.09001 * 109.46582 * 178.77984 * 1 2 3 33 33 H 1.09004 * 109.47300 * 181.21896 * 3 2 1 34 34 H 1.09002 * 109.47412 * 301.21509 * 3 2 1 35 35 H 1.09003 * 109.47283 * 61.21899 * 3 2 1 36 36 H 1.09001 * 109.89640 * 45.45736 * 4 2 1 37 37 H 1.09006 * 109.89424 * 284.35232 * 4 2 1 38 38 H 1.09000 * 109.44703 * 180.82342 * 5 4 2 39 39 H 1.08995 * 109.44370 * 60.92228 * 5 4 2 40 40 H 1.09003 * 109.04525 * 316.50183 * 6 5 4 41 41 H 0.97001 * 119.99983 * 335.00128 * 7 6 5 42 42 H 1.09003 * 109.47033 * 300.00238 * 10 8 7 43 43 H 1.09003 * 109.47125 * 59.99707 * 10 8 7 44 44 H 1.07999 * 126.01313 * 359.95085 * 12 11 10 45 45 H 1.08995 * 109.47526 * 225.16261 * 14 13 12 46 46 H 0.96707 * 113.99552 * 180.02562 * 15 14 13 47 47 H 1.07995 * 120.06620 * 359.97438 * 22 21 20 48 48 H 1.08000 * 119.93900 * 180.32211 * 23 22 21 49 49 H 1.08004 * 119.87900 * 179.69890 * 24 23 22 50 50 H 1.08005 * 119.94223 * 180.02562 * 25 24 23 51 51 H 1.08004 * 120.06133 * 180.02562 * 26 25 24 52 52 H 1.09004 * 109.44645 * 43.05984 * 28 6 5 53 53 H 1.09001 * 109.44634 * 162.96072 * 28 6 5 54 54 H 1.08997 * 109.89773 * 299.67819 * 29 28 6 55 55 H 1.09001 * 109.89512 * 178.56951 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5001 1.7507 0.0000 4 6 2.5023 -0.9129 1.5062 5 6 3.9902 -1.2116 1.2619 6 6 4.1432 -2.0545 0.0000 7 7 5.4686 -2.6788 -0.0001 8 6 5.6749 -3.8224 -0.6829 9 8 4.7646 -4.3320 -1.3013 10 6 7.0366 -4.4678 -0.6778 11 7 7.0013 -5.6889 -1.4863 12 6 7.8158 -5.9758 -2.5245 13 6 7.4678 -7.1895 -3.0047 14 6 8.1131 -7.9034 -4.1644 15 8 8.9363 -8.9631 -3.6729 16 14 9.1588 -6.7012 -5.1297 17 1 10.2120 -6.1405 -4.2456 18 1 9.7951 -7.4048 -6.2720 19 1 8.3032 -5.6000 -5.6403 20 6 6.3939 -7.6687 -2.2294 21 6 5.6975 -8.9669 -2.4101 22 6 5.3721 -9.4137 -3.6889 23 6 4.7305 -10.6250 -3.8515 24 6 4.3993 -11.3886 -2.7469 25 6 4.7145 -10.9469 -1.4746 26 6 5.3614 -9.7402 -1.3009 27 7 6.1199 -6.7638 -1.3136 28 6 3.9902 -1.2117 -1.2619 29 6 2.5023 -0.9129 -1.5064 30 1 -0.3633 0.4947 0.9007 31 1 -0.3633 0.5326 -0.8789 32 1 -0.3632 -1.0275 -0.0219 33 1 3.5899 1.7408 -0.0219 34 1 2.1239 2.2743 -0.8789 35 1 2.1594 2.2613 0.9007 36 1 1.9531 -1.8455 1.6356 37 1 2.3900 -0.2893 2.3932 38 1 4.3954 -1.7573 2.1140 39 1 4.5332 -0.2745 1.1402 40 1 3.3826 -2.8353 -0.0007 41 1 6.1967 -2.2712 0.4946 42 1 7.7681 -3.7761 -1.0956 43 1 7.3163 -4.7181 0.3456 44 1 8.6063 -5.3455 -2.9044 45 1 7.3401 -8.3150 -4.8133 46 1 9.3845 -9.4668 -4.3661 47 1 5.6256 -8.8157 -4.5517 48 1 4.4824 -10.9747 -4.8427 49 1 3.8929 -12.3336 -2.8783 50 1 4.4539 -11.5474 -0.6155 51 1 5.6075 -9.3963 -0.3071 52 1 4.5332 -0.2744 -1.1404 53 1 4.3954 -1.7573 -2.1141 54 1 1.9531 -1.8454 -1.6357 55 1 2.3900 -0.2893 -2.3933 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:52:56 Heat of formation + Delta-G solvation = -3.339485 kcal Electronic energy + Delta-G solvation = -33598.309130 eV Core-core repulsion = 29339.159685 eV Total energy + Delta-G solvation = -4259.149445 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.51823 -40.94946 -39.79022 -37.99372 -37.58371 -34.88885 -33.99310 -32.40687 -32.04021 -31.92328 -31.46724 -29.31876 -28.85586 -28.35650 -26.60108 -25.76637 -24.07203 -23.52104 -23.43249 -21.86181 -21.57932 -21.50435 -20.80408 -18.51448 -18.44774 -18.23225 -17.69799 -16.99262 -16.69530 -16.26433 -16.21957 -15.97509 -15.75295 -15.52461 -15.23171 -15.09181 -14.98970 -14.58270 -14.34375 -14.28335 -14.14222 -13.98402 -13.91098 -13.77361 -13.62257 -13.44317 -13.36178 -13.30558 -13.17390 -13.08338 -12.95777 -12.67489 -12.51840 -12.30984 -12.23277 -12.17431 -12.09098 -11.87093 -11.77274 -11.54446 -11.29642 -10.76355 -10.65336 -10.44090 -10.31443 -10.12902 -10.03378 -9.86801 -9.80579 -9.31265 0.11013 0.46747 0.75912 1.18104 1.27618 1.46831 1.49848 1.53452 1.69358 1.81396 1.92219 1.93867 2.01831 2.10912 2.66124 2.88949 3.28758 3.56623 3.59847 3.75191 3.83651 3.85341 3.95526 4.03512 4.06489 4.08915 4.14528 4.18875 4.26223 4.35280 4.35580 4.51167 4.52316 4.56499 4.63530 4.74466 4.76189 4.78320 4.81052 4.83764 4.87098 4.87282 4.89711 4.97834 5.11460 5.13301 5.21549 5.24294 5.28135 5.35381 5.44406 5.48978 5.56312 5.57170 5.57535 5.60537 5.68599 5.85020 6.04070 6.46916 6.54880 6.93011 7.16971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.412 4.412 5 C -0.111 4.111 6 C 0.138 3.862 7 N -0.710 5.710 8 C 0.494 3.506 9 O -0.564 6.564 10 C 0.108 3.892 11 N -0.360 5.360 12 C 0.062 3.938 13 C -0.228 4.228 14 C -0.051 4.051 15 O -0.563 6.563 16 Si 0.982 3.018 17 H -0.249 1.249 18 H -0.250 1.250 19 H -0.262 1.262 20 C 0.110 3.890 21 C -0.026 4.026 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.113 4.113 27 N -0.292 5.292 28 C -0.113 4.113 29 C -0.425 4.425 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.421 0.579 42 H 0.176 0.824 43 H 0.142 0.858 44 H 0.210 0.790 45 H 0.076 0.924 46 H 0.392 0.608 47 H 0.134 0.866 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.141 0.859 51 H 0.112 0.888 52 H 0.089 0.911 53 H 0.036 0.964 54 H 0.054 0.946 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 5.354 0.555 7.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.498 4.498 5 C -0.149 4.149 6 C 0.034 3.966 7 N -0.364 5.364 8 C 0.279 3.721 9 O -0.441 6.441 10 C -0.015 4.015 11 N -0.142 5.142 12 C -0.083 4.083 13 C -0.239 4.239 14 C -0.161 4.161 15 O -0.371 6.371 16 Si 0.803 3.197 17 H -0.172 1.172 18 H -0.173 1.173 19 H -0.187 1.187 20 C -0.055 4.055 21 C -0.028 4.028 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.133 4.133 27 N -0.114 5.114 28 C -0.151 4.151 29 C -0.508 4.508 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.259 0.741 42 H 0.193 0.807 43 H 0.160 0.840 44 H 0.226 0.774 45 H 0.094 0.906 46 H 0.242 0.758 47 H 0.152 0.848 48 H 0.169 0.831 49 H 0.166 0.834 50 H 0.159 0.841 51 H 0.130 0.870 52 H 0.107 0.893 53 H 0.055 0.945 54 H 0.073 0.927 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.554 6.274 1.307 7.328 hybrid contribution 0.335 -0.793 -0.684 1.100 sum 3.890 5.480 0.624 6.749 Atomic orbital electron populations 1.26325 1.22499 1.04030 1.04553 0.78639 0.64999 0.66370 0.64839 1.26122 1.06891 1.18091 1.04684 1.26309 0.99566 1.08341 1.15614 1.21459 0.97685 1.00503 0.95246 1.21028 0.84195 0.95283 0.96137 1.45932 1.14050 1.24469 1.51924 1.21051 0.90767 0.81169 0.79155 1.90815 1.45629 1.63760 1.43914 1.22007 0.96524 0.83328 0.99664 1.48087 1.25618 1.14835 1.25624 1.22741 0.97206 0.97942 0.90445 1.19717 1.02123 0.97081 1.04999 1.24274 0.98335 0.96256 0.97219 1.86512 1.64466 1.47792 1.38312 0.85309 0.78491 0.77878 0.78011 1.17218 1.17345 1.18661 1.20903 0.95969 0.94071 0.94564 1.17978 0.99159 0.91004 0.94666 1.21325 0.98448 0.97048 0.95701 1.21414 0.98108 0.93907 1.00380 1.21585 0.99143 1.00719 0.92183 1.21353 0.98535 0.95713 0.98787 1.21251 0.98866 0.95352 0.97797 1.77680 1.13847 0.96373 1.23458 1.21532 0.97060 1.00139 0.96368 1.26559 0.99936 1.07816 1.16497 0.90765 0.91422 0.92041 0.90372 0.91403 0.90662 0.91432 0.88749 0.90663 0.88634 0.92542 0.74137 0.80720 0.84038 0.77390 0.90598 0.75800 0.84822 0.83103 0.83400 0.84098 0.86993 0.89251 0.94547 0.92658 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.65 8.65 113.37 0.98 1.63 16 2 Si 1.06 -5.38 11.59 68.60 0.80 -4.58 16 3 C -0.45 2.50 8.65 113.37 0.98 3.49 16 4 C -0.41 1.85 4.98 72.22 0.36 2.21 16 5 C -0.11 0.61 5.05 30.68 0.15 0.76 16 6 C 0.14 0.00 2.04 44.67 0.09 0.09 16 7 N -0.71 2.05 5.05 -444.03 -2.24 -0.19 16 8 C 0.49 2.05 7.62 87.66 0.67 2.72 16 9 O -0.56 -9.43 15.38 -3.03 -0.05 -9.48 16 10 C 0.11 -0.29 6.98 85.63 0.60 0.30 16 11 N -0.36 -2.62 3.40 -351.92 -1.20 -3.82 16 12 C 0.06 0.29 9.96 83.47 0.83 1.12 16 13 C -0.23 -2.00 5.39 -19.95 -0.11 -2.10 16 14 C -0.05 -0.15 2.50 71.23 0.18 0.02 16 15 O -0.56 -2.17 12.86 -148.98 -1.92 -4.09 16 16 Si 0.98 -1.27 26.06 68.60 1.79 0.51 16 17 H -0.25 0.36 7.03 99.48 0.70 1.06 16 18 H -0.25 0.44 7.11 99.48 0.71 1.15 16 19 H -0.26 -0.18 7.11 99.48 0.71 0.53 16 20 C 0.11 1.57 6.67 42.53 0.28 1.85 16 21 C -0.03 -0.34 5.74 -20.04 -0.12 -0.45 16 22 C -0.11 -0.87 8.89 22.48 0.20 -0.67 16 23 C -0.12 -0.53 10.03 22.24 0.22 -0.31 16 24 C -0.12 -0.50 10.04 22.31 0.22 -0.28 16 25 C -0.13 -0.88 10.03 22.24 0.22 -0.65 16 26 C -0.11 -1.34 9.78 22.48 0.22 -1.12 16 27 N -0.29 -4.59 11.69 -48.15 -0.56 -5.15 16 28 C -0.11 -0.06 5.18 30.68 0.16 0.10 16 29 C -0.42 -0.28 4.98 72.22 0.36 0.08 16 30 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 33 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 36 H 0.07 -0.12 7.99 -2.39 -0.02 -0.14 16 37 H 0.09 -0.63 7.99 -2.38 -0.02 -0.65 16 38 H 0.07 -0.44 8.13 -2.39 -0.02 -0.46 16 39 H 0.10 -0.95 7.69 -2.39 -0.02 -0.97 16 40 H 0.06 0.41 7.34 -2.39 -0.02 0.39 16 41 H 0.42 -4.80 8.58 -92.71 -0.80 -5.60 16 42 H 0.18 -2.27 8.07 -2.39 -0.02 -2.29 16 43 H 0.14 -1.07 8.14 -2.39 -0.02 -1.09 16 44 H 0.21 -0.82 6.35 -2.91 -0.02 -0.84 16 45 H 0.08 0.08 5.55 -2.39 -0.01 0.07 16 46 H 0.39 -2.19 8.74 -74.05 -0.65 -2.84 16 47 H 0.13 0.67 6.21 -2.91 -0.02 0.65 16 48 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 49 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 50 H 0.14 0.35 8.06 -2.91 -0.02 0.32 16 51 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 52 H 0.09 -0.41 7.69 -2.39 -0.02 -0.43 16 53 H 0.04 0.24 7.93 -2.39 -0.02 0.22 16 54 H 0.05 0.28 7.99 -2.39 -0.02 0.26 16 55 H 0.08 0.01 7.99 -2.39 -0.02 -0.01 16 Total: 0.00 -32.69 442.83 3.34 -29.35 By element: Atomic # 1 Polarization: -11.57 SS G_CDS: 0.21 Total: -11.36 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.51 Total: 8.81 kcal Atomic # 7 Polarization: -5.16 SS G_CDS: -4.00 Total: -9.16 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.96 Total: -13.57 kcal Atomic # 14 Polarization: -6.65 SS G_CDS: 2.58 Total: -4.07 kcal Total: -32.69 3.34 -29.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.009 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds