Wall clock time and date at job start Sun Mar 7 2021 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.93424 * 2 1 4 4 C 1.87383 * 109.94508 * 121.16969 * 2 1 3 5 5 C 1.53715 * 107.28174 * 73.84531 * 4 2 1 6 6 C 1.52526 * 109.64124 * 59.12565 * 5 4 2 7 7 N 1.46501 * 109.04526 * 162.44982 * 6 5 4 8 8 C 1.34777 * 119.99920 * 205.00023 * 7 6 5 9 9 O 1.21621 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.47292 * 119.99607 * 179.97438 * 8 7 6 11 11 C 1.39874 * 120.05143 * 0.02562 * 10 8 7 12 12 C 1.36427 * 120.19051 * 180.02562 * 11 10 8 13 13 C 1.39920 * 120.27858 * 0.02562 * 12 11 10 14 14 C 1.47569 * 119.95690 * 179.97438 * 13 12 11 15 15 C 1.36105 * 125.94222 * 359.97438 * 14 13 12 16 16 C 1.40798 * 106.73122 * 180.02562 * 15 14 13 17 17 C 1.34838 * 107.04802 * 359.97438 * 16 15 14 18 18 C 1.50709 * 125.64955 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.46928 * 300.00230 * 18 17 16 20 20 Si 1.86299 * 109.46851 * 179.97438 * 18 17 16 21 21 H 1.48497 * 109.47147 * 60.00219 * 20 18 17 22 22 H 1.48504 * 109.46841 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47304 * 300.00108 * 20 18 17 24 24 O 1.34227 * 108.69439 * 359.73775 * 17 16 15 25 25 C 1.39606 * 120.08524 * 359.97438 * 13 12 11 26 26 C 1.38278 * 119.81658 * 359.72631 * 25 13 12 27 27 O 1.35675 * 120.13796 * 180.29582 * 26 25 13 28 28 C 1.52519 * 111.65616 * 283.00840 * 6 5 4 29 29 C 1.53719 * 109.64044 * 76.98849 * 28 6 5 30 30 H 1.08998 * 109.47182 * 298.82798 * 1 2 3 31 31 H 1.09001 * 109.46975 * 58.82601 * 1 2 3 32 32 H 1.09003 * 109.47101 * 178.82566 * 1 2 3 33 33 H 1.08993 * 109.47166 * 181.16923 * 3 2 1 34 34 H 1.08997 * 109.46820 * 301.17364 * 3 2 1 35 35 H 1.08999 * 109.47079 * 61.16960 * 3 2 1 36 36 H 1.08998 * 109.89662 * 314.40513 * 4 2 1 37 37 H 1.09003 * 109.96077 * 193.32637 * 4 2 1 38 38 H 1.08997 * 109.44794 * 299.07188 * 5 4 2 39 39 H 1.09001 * 109.44805 * 179.17424 * 5 4 2 40 40 H 1.08998 * 109.04682 * 43.57131 * 6 5 4 41 41 H 0.97007 * 119.99913 * 24.99483 * 7 6 5 42 42 H 1.08009 * 119.90540 * 0.02562 * 11 10 8 43 43 H 1.08001 * 119.85813 * 179.97438 * 12 11 10 44 44 H 1.08000 * 126.63285 * 0.02562 * 15 14 13 45 45 H 1.07998 * 126.47857 * 180.02562 * 16 15 14 46 46 H 1.09001 * 109.46670 * 60.00013 * 18 17 16 47 47 H 0.96703 * 114.00131 * 299.99603 * 19 18 17 48 48 H 1.08006 * 120.09429 * 180.02562 * 25 13 12 49 49 H 0.96697 * 113.99792 * 270.27186 * 27 26 25 50 50 H 1.09003 * 109.44726 * 197.04076 * 28 6 5 51 51 H 1.08997 * 109.44334 * 316.93977 * 28 6 5 52 52 H 1.08997 * 109.89269 * 181.43108 * 29 28 6 53 53 H 1.08996 * 109.89190 * 60.32127 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4982 1.7514 0.0000 4 6 2.5022 -0.9117 1.5072 5 6 2.2741 -2.4122 1.2640 6 6 3.0138 -2.8454 0.0024 7 7 3.1472 -4.3044 0.0036 8 6 4.1480 -4.8901 -0.6832 9 8 4.9402 -4.2076 -1.3044 10 6 4.2823 -6.3569 -0.6816 11 6 3.3715 -7.1429 0.0320 12 6 3.4936 -8.5017 0.0359 13 6 4.5302 -9.1189 -0.6727 14 6 4.6559 -10.5892 -0.6632 15 6 3.8360 -11.4569 -0.0093 16 6 4.3229 -12.7514 -0.2729 17 6 5.4041 -12.6131 -1.0666 18 6 6.2500 -13.7393 -1.6028 19 8 6.8077 -14.4766 -0.5132 20 14 7.6242 -13.0402 -2.6485 21 1 8.4663 -12.1392 -1.8213 22 1 8.4581 -14.1498 -3.1764 23 1 7.0441 -12.2742 -3.7808 24 8 5.5985 -11.3065 -1.3051 25 6 5.4457 -8.3456 -1.3888 26 6 5.3219 -6.9685 -1.4005 27 8 6.2044 -6.2110 -2.0991 28 6 2.2742 -2.4144 -1.2598 29 6 2.5023 -0.9142 -1.5055 30 1 -0.3633 0.4955 0.9003 31 1 -0.3633 0.5320 -0.8793 32 1 -0.3633 -1.0275 -0.0211 33 1 3.5879 1.7427 -0.0210 34 1 2.1219 2.2743 -0.8793 35 1 2.1562 2.2619 0.9003 36 1 1.9546 -0.5923 2.3938 37 1 3.5663 -0.7146 1.6377 38 1 1.2077 -2.6022 1.1425 39 1 2.6482 -2.9791 2.1165 40 1 4.0081 -2.3988 0.0020 41 1 2.5151 -4.8488 0.4987 42 1 2.5693 -6.6727 0.5814 43 1 2.7875 -9.1033 0.5890 44 1 2.9780 -11.2017 0.5949 45 1 3.9082 -13.6798 0.0911 46 1 5.6319 -14.4003 -2.2104 47 1 7.3706 -13.9501 0.0708 48 1 6.2457 -8.8220 -1.9362 49 1 6.9813 -5.9422 -1.5900 50 1 2.6483 -2.9825 -2.1116 51 1 1.2078 -2.6040 -1.1381 52 1 1.9547 -0.5962 -2.3927 53 1 3.5664 -0.7171 -1.6349 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:53:35 Heat of formation + Delta-G solvation = -110.679705 kcal Electronic energy + Delta-G solvation = -33188.480162 eV Core-core repulsion = 28729.238771 eV Total energy + Delta-G solvation = -4459.241390 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 389.166 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.76513 -41.65577 -40.02906 -38.17064 -37.89241 -37.65592 -34.53807 -34.10757 -32.98912 -32.00045 -31.33273 -30.48498 -29.16898 -28.32418 -27.43701 -26.25498 -24.33806 -24.07378 -23.46977 -22.48425 -21.87289 -21.54547 -21.28956 -19.75289 -18.75982 -18.55168 -17.77266 -17.56282 -17.44278 -16.76024 -16.45974 -16.29950 -16.15731 -15.78367 -15.72924 -15.54946 -14.98237 -14.94954 -14.78107 -14.36631 -14.02445 -13.98027 -13.90576 -13.86907 -13.73949 -13.61815 -13.53819 -13.35408 -13.28609 -13.14515 -13.04197 -12.91522 -12.85438 -12.74798 -12.48271 -12.31555 -12.13538 -12.09054 -11.94135 -11.72426 -11.14570 -10.96575 -10.77732 -10.71202 -10.54612 -10.41049 -10.26478 -10.02063 -9.97095 -9.02518 -0.81974 0.10263 0.62730 1.01098 1.33857 1.36966 1.46376 1.71700 1.85284 1.85560 1.91287 1.96027 2.04184 2.11225 2.61814 2.70051 2.98249 3.27925 3.40723 3.57928 3.63678 3.79910 3.87456 3.96673 3.99321 4.07794 4.18266 4.24179 4.35369 4.39642 4.45158 4.54241 4.61737 4.64841 4.69432 4.78248 4.81040 4.82557 4.85239 4.86327 4.89536 4.90868 4.92059 5.03477 5.07655 5.17217 5.18452 5.26033 5.28695 5.39313 5.43534 5.48998 5.50190 5.53806 5.61739 5.71333 5.95405 6.50198 6.52808 6.64312 7.18934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.060 2.940 3 C -0.466 4.466 4 C -0.409 4.409 5 C -0.113 4.113 6 C 0.137 3.863 7 N -0.710 5.710 8 C 0.553 3.447 9 O -0.564 6.564 10 C -0.180 4.180 11 C -0.050 4.050 12 C -0.108 4.108 13 C 0.025 3.975 14 C -0.001 4.001 15 C -0.168 4.168 16 C -0.177 4.177 17 C -0.058 4.058 18 C -0.030 4.030 19 O -0.536 6.536 20 Si 0.978 3.022 21 H -0.265 1.265 22 H -0.251 1.251 23 H -0.270 1.270 24 O -0.186 6.186 25 C -0.157 4.157 26 C 0.158 3.842 27 O -0.496 6.496 28 C -0.116 4.116 29 C -0.425 4.425 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.414 0.586 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.172 0.828 46 H 0.155 0.845 47 H 0.393 0.607 48 H 0.133 0.867 49 H 0.407 0.593 50 H 0.033 0.967 51 H 0.085 0.915 52 H 0.074 0.926 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -1.768 6.772 8.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.252 2.748 3 C -0.572 4.572 4 C -0.495 4.495 5 C -0.150 4.150 6 C 0.033 3.967 7 N -0.363 5.363 8 C 0.341 3.659 9 O -0.444 6.444 10 C -0.183 4.183 11 C -0.068 4.068 12 C -0.126 4.126 13 C 0.024 3.976 14 C -0.050 4.050 15 C -0.187 4.187 16 C -0.196 4.196 17 C -0.108 4.108 18 C -0.141 4.141 19 O -0.343 6.343 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.174 1.174 23 H -0.194 1.194 24 O -0.084 6.084 25 C -0.176 4.176 26 C 0.112 3.888 27 O -0.309 6.309 28 C -0.154 4.154 29 C -0.508 4.508 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.253 0.747 42 H 0.192 0.808 43 H 0.190 0.810 44 H 0.202 0.798 45 H 0.189 0.811 46 H 0.172 0.828 47 H 0.243 0.757 48 H 0.151 0.849 49 H 0.267 0.733 50 H 0.052 0.948 51 H 0.104 0.896 52 H 0.093 0.907 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.809 -1.359 4.911 7.006 hybrid contribution 0.586 0.190 0.418 0.744 sum -4.223 -1.170 5.328 6.899 Atomic orbital electron populations 1.26161 1.20398 1.04890 1.04610 0.78628 0.66486 0.64758 0.64928 1.26298 1.06187 1.20246 1.04503 1.26274 1.06541 1.01297 1.15417 1.21475 1.01446 0.96861 0.95247 1.21089 1.00397 0.79156 0.96064 1.45962 1.30544 1.08234 1.51560 1.18252 0.81185 0.87538 0.78886 1.90816 1.44071 1.65641 1.43864 1.20573 1.00778 0.93334 1.03656 1.21206 0.97071 0.93193 0.95380 1.21072 0.97312 0.94830 0.99357 1.17981 0.95630 0.86955 0.97013 1.20591 0.92551 0.91254 1.00586 1.22277 1.02097 0.91431 1.02906 1.21842 0.96621 0.99687 1.01483 1.23407 1.01262 0.82212 1.03869 1.24299 1.02555 0.92215 0.95000 1.86547 1.68000 1.38442 1.41348 0.85210 0.77294 0.78755 0.78513 1.18862 1.17403 1.19435 1.83932 1.47243 1.18167 1.59070 1.21545 1.01559 0.92694 1.01777 1.18507 0.90946 0.89046 0.90299 1.84729 1.35679 1.70523 1.39990 1.21560 1.01057 0.96269 0.96550 1.26580 1.05699 1.02036 1.16493 0.90640 0.91563 0.90578 0.91782 0.91554 0.90754 0.88673 0.90926 0.88930 0.90349 0.91587 0.74738 0.80805 0.80994 0.79832 0.81080 0.82812 0.75709 0.84949 0.73266 0.94794 0.89649 0.90733 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.42 8.65 113.37 0.98 3.40 16 2 Si 1.06 -5.88 11.60 68.60 0.80 -5.09 16 3 C -0.47 1.07 8.65 113.37 0.98 2.05 16 4 C -0.41 2.30 4.98 72.22 0.36 2.66 16 5 C -0.11 0.66 5.05 30.68 0.15 0.82 16 6 C 0.14 0.03 2.03 44.67 0.09 0.12 16 7 N -0.71 0.42 5.00 -447.44 -2.24 -1.81 16 8 C 0.55 3.85 7.51 86.62 0.65 4.50 16 9 O -0.56 -8.97 14.81 16.89 0.25 -8.72 16 10 C -0.18 -0.66 5.89 -19.97 -0.12 -0.78 16 11 C -0.05 0.22 9.47 22.24 0.21 0.43 16 12 C -0.11 0.47 9.48 22.25 0.21 0.68 16 13 C 0.02 0.04 5.87 -20.08 -0.12 -0.08 16 14 C 0.00 0.00 7.02 24.24 0.17 0.17 16 15 C -0.17 0.25 10.26 22.40 0.23 0.48 16 16 C -0.18 0.10 10.77 22.11 0.24 0.34 16 17 C -0.06 -0.07 6.22 24.91 0.15 0.08 16 18 C -0.03 0.06 2.98 71.24 0.21 0.27 16 19 O -0.54 1.09 12.87 -148.98 -1.92 -0.83 16 20 Si 0.98 0.27 27.38 68.60 1.88 2.15 16 21 H -0.26 -0.69 7.11 99.48 0.71 0.01 16 22 H -0.25 -0.30 7.11 99.48 0.71 0.40 16 23 H -0.27 -1.11 7.11 99.48 0.71 -0.40 16 24 O -0.19 -0.90 8.78 -5.92 -0.05 -0.95 16 25 C -0.16 -0.82 9.65 22.61 0.22 -0.60 16 26 C 0.16 1.11 6.71 22.81 0.15 1.27 16 27 O -0.50 -4.87 11.56 -68.93 -0.80 -5.66 16 28 C -0.12 -0.19 5.18 30.68 0.16 -0.03 16 29 C -0.42 -0.26 4.98 72.22 0.36 0.10 16 30 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 33 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 34 H 0.07 -0.11 7.96 -2.39 -0.02 -0.12 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 36 H 0.09 -0.74 7.99 -2.39 -0.02 -0.76 16 37 H 0.07 -0.27 7.99 -2.39 -0.02 -0.29 16 38 H 0.09 -0.90 7.69 -2.39 -0.02 -0.92 16 39 H 0.08 -0.53 8.13 -2.39 -0.02 -0.55 16 40 H 0.07 0.36 7.34 -2.39 -0.02 0.35 16 41 H 0.41 -3.40 6.59 -92.70 -0.61 -4.01 16 42 H 0.17 -2.20 6.38 -2.91 -0.02 -2.22 16 43 H 0.17 -1.92 6.95 -2.91 -0.02 -1.94 16 44 H 0.18 -1.48 7.24 -2.91 -0.02 -1.50 16 45 H 0.17 -0.67 8.06 -2.91 -0.02 -0.70 16 46 H 0.15 -0.88 7.96 -2.39 -0.02 -0.90 16 47 H 0.39 -3.07 8.70 -74.06 -0.64 -3.71 16 48 H 0.13 0.77 7.90 -2.91 -0.02 0.74 16 49 H 0.41 1.07 9.06 -74.06 -0.67 0.40 16 50 H 0.03 0.29 7.92 -2.39 -0.02 0.27 16 51 H 0.09 -0.25 7.69 -2.39 -0.02 -0.27 16 52 H 0.07 0.04 7.99 -2.39 -0.02 0.02 16 53 H 0.06 0.24 7.99 -2.39 -0.02 0.22 16 Total: 0.00 -25.53 432.02 3.01 -22.52 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -0.21 Total: -17.47 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 5.30 Total: 15.87 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -2.24 Total: -1.81 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -2.52 Total: -16.16 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.67 Total: -2.93 kcal Total: -25.53 3.01 -22.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.161 kcal (2) G-P(sol) polarization free energy of solvation -25.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds